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1.
Mov Ecol ; 12(1): 19, 2024 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-38429836

RESUMEN

BACKGROUND: Understanding how to connect habitat remnants to facilitate the movement of species is a critical task in an increasingly fragmented world impacted by human activities. The identification of dispersal routes and corridors through connectivity analysis requires measures of landscape resistance but there has been no consensus on how to calculate resistance from habitat characteristics, potentially leading to very different connectivity outcomes. METHODS: We propose a new model, called the Time-Explicit Habitat Selection (TEHS) model, that can be directly used for connectivity analysis. The TEHS model decomposes the movement process in a principled approach into a time and a selection component, providing complementary information regarding space use by separately assessing the drivers of time to traverse the landscape and the drivers of habitat selection. These models are illustrated using GPS-tracking data from giant anteaters (Myrmecophaga tridactyla) in the Pantanal wetlands of Brazil. RESULTS: The time model revealed that the fastest movements tended to occur between 8 p.m. and 5 a.m., suggesting a crepuscular/nocturnal behavior. Giant anteaters moved faster over wetlands while moving much slower over forests and savannas, in comparison to grasslands. We also found that wetlands were consistently avoided whereas forest and savannas tended to be selected. Importantly, this model revealed that selection for forest increased with temperature, suggesting that forests may act as important thermal shelters when temperatures are high. Finally, using the spatial absorbing Markov chain framework, we show that the TEHS model results can be used to simulate movement and connectivity within a fragmented landscape, revealing that giant anteaters will often not use the shortest-distance path to the destination patch due to avoidance of certain habitats. CONCLUSIONS: The proposed approach can be used to characterize how landscape features are perceived by individuals through the decomposition of movement patterns into a time and a habitat selection component. Additionally, this framework can help bridge the gap between movement-based models and connectivity analysis, enabling the generation of time-explicit connectivity results.

2.
Mov Ecol ; 12(1): 14, 2024 Feb 08.
Artículo en Inglés | MEDLINE | ID: mdl-38331810

RESUMEN

BACKGROUND: The process known as ecological diffusion emerges from a first principles view of animal movement, but ecological diffusion and other partial differential equation models can be difficult to fit to data. Step-selection functions (SSFs), on the other hand, have emerged as powerful practical tools for ecologists studying the movement and habitat selection of animals. METHODS: SSFs typically involve comparing resources between a set of used and available points at each step in a sequence of observed positions. We use change of variables to show that ecological diffusion implies certain distributions for available steps that are more flexible than others commonly used. We then demonstrate advantages of these distributions with SSF models fit to data collected for a mountain lion in Colorado, USA. RESULTS: We show that connections between ecological diffusion and SSFs imply a Rayleigh step-length distribution and uniform turning angle distribution, which can accommodate data collected at irregular time intervals. The results of fitting an SSF model with these distributions compared to a set of commonly used distributions revealed how precision and inference can vary between the two approaches. CONCLUSIONS: Our new continuous-time step-length distribution can be integrated into various forms of SSFs, making them applicable to data sets with irregular time intervals between successive animal locations.

3.
PLoS One ; 19(2): e0297777, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38412197

RESUMEN

This study presents the status and trends of long-term monitoring of the elemental concentrations of zinc (Zn), lead (Pb), and cadmium (Cd) in Hylocomium splendens moss tissue in Cape Krusenstern National Monument (CAKR), Alaska, adjacent to the Red Dog Mine haul road. Spatial patterns of the deposition of these metals were re-assessed for the period from 2006-2017 following an identical study that assessed trends between 2001-2006. In contrast to the widespread and steep declines in Zn and Pb levels throughout most of the study area between 2001-2006, this study showed more mixed results for 2006-2017. At distances within 100 m of the haul road, only Pb decreased between 2006-2017. At distances between 100-5,000 m, however, both Zn and Cd decreased between 2006-2017, with high probabilities of decrease and percent decreases of 11-20% and 46-52% respectively. Lead did not decrease in any of the more distant areas. Following earlier work on lichen species richness in the study area, it appears that 2017 Zn levels are approaching those associated with "background" lichen species richness throughout a relatively large proportion of the study area at least 2,000 m from the haul road and several km from the port site. The findings in this study may be used to plan additional mitigation measures to reduce Zn deposition related to impacts on lichen communities.


Asunto(s)
Canidae , Líquenes , Metales Pesados , Contaminantes del Suelo , Animales , Perros , Alaska , Cadmio/análisis , Polvo/análisis , Parques Recreativos , Plomo , Monitoreo del Ambiente , Metales Pesados/análisis , Zinc/análisis , Contaminantes del Suelo/análisis , China
4.
bioRxiv ; 2024 Feb 12.
Artículo en Inglés | MEDLINE | ID: mdl-38405850

RESUMEN

The rising introduction of invasive species through trade networks threatens biodiversity and ecosystem services. Yet, we have a limited understanding of how transportation networks determine patterns of range expansion. This is partly because current analytical models fail to integrate the invader's life-history dynamics with heterogeneity in human-mediated dispersal patterns. And partly because classical statistical methods often fail to provide reliable estimates of model parameters due to spatial biases in the presence-only records and lack of informative demographic data. To address these gaps, we first formulate an age-structured metapopulation model that uses a probability matrix to emulate human-mediated dispersal patterns. The model reveals that an invader spreads along the shortest network path, such that the inter-patch network distances decrease with increasing traffic volume and reproductive value of hitchhikers. Next, we propose a Bayesian statistical method to estimate model parameters using presence-only data and prior demographic knowledge. To show the utility of the statistical approach, we analyze zebra mussel (Dreissena polymorpha) expansion in North America through the commercial shipping network. Our analysis underscores the importance of correcting spatial biases and leveraging priors to answer questions, such as where and when the zebra mussels were introduced and what life-history characteristics make these mollusks successful invaders.

5.
Glob Chang Biol ; 30(1): e17029, 2024 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-37987546

RESUMEN

Climate change affects populations over broad geographic ranges due to spatially autocorrelated abiotic conditions known as the Moran effect. However, populations do not always respond to broad-scale environmental changes synchronously across a landscape. We combined multiple datasets for a retrospective analysis of time-series count data (5-28 annual samples per segment) at 144 stream segments dispersed over nearly 1,000 linear kilometers of range to characterize the population structure and scale of spatial synchrony across the southern native range of a coldwater stream fish (brook trout, Salvelinus fontinalis), which is sensitive to stream temperature and flow variations. Spatial synchrony differed by life stage and geographic region: it was stronger in the juvenile life stage than in the adult life stage and in the northern sub-region than in the southern sub-region. Spatial synchrony of trout populations extended to 100-200 km but was much weaker than that of climate variables such as temperature, precipitation, and stream flow. Early life stage abundance changed over time due to annual variation in summer temperature and winter and spring stream flow conditions. Climate effects on abundance differed between sub-regions and among local populations within sub-regions, indicating multiple cross-scale interactions where climate interacted with local habitat to generate only a modest pattern of population synchrony over space. Overall, our analysis showed higher degrees of response heterogeneity of local populations to climate variation and consequently population asynchrony than previously shown based on analysis of individual, geographically restricted datasets. This response heterogeneity indicates that certain local segments characterized by population asynchrony and resistance to climate variation could represent unique populations of this iconic native coldwater fish that warrant targeted conservation. Advancing the conservation of this species can include actions that identify such priority populations and incorporate them into landscape-level conservation planning. Our approach is applicable to other widespread aquatic species sensitive to climate change.


Asunto(s)
Cambio Climático , Ríos , Animales , Estudios Retrospectivos , Trucha/fisiología , Temperatura , Ecosistema
6.
PLoS One ; 18(8): e0285890, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37607193

RESUMEN

Mercury (Hg) is a concerning contaminant due to its widespread distribution and tendency to accumulate to harmful concentrations in biota. We used a machine learning approach called random forest (RF) to test for different predictors of Hg concentrations in three species of Colorado reservoir sport fish. The RF approach indicated that the best predictors of 864 mm northern pike (Esox lucius) Hg concentrations were covariates related to salmonid stocking in each study system, while system-specific metrics related to productivity and forage base were the best predictors of Hg concentrations of 381 mm smallmouth bass (Micropterus dolomieu), and walleye (Sander vitreus). Protecting human and ecological health from Hg contamination requires an understanding of fish Hg concentrations and variability across the landscape and through time. The RF approach could be applied to identify potential areas/systems of concern, and predict whether sport fish Hg concentrations may change as a result of a variety of factors to help prioritize, focus, and streamline monitoring efforts to effectively and efficiently inform human and ecological health.


Asunto(s)
Lubina , Mercurio , Percas , Salmonidae , Animales , Humanos , Esocidae
7.
Biometrics ; 79(4): 3941-3953, 2023 12.
Artículo en Inglés | MEDLINE | ID: mdl-37443410

RESUMEN

Integrated models are a popular tool for analyzing species of conservation concern. Species of conservation concern are often monitored by multiple entities that generate several datasets. Individually, these datasets may be insufficient for guiding management due to low spatio-temporal resolution, biased sampling, or large observational uncertainty. Integrated models provide an approach for assimilating multiple datasets in a coherent framework that can compensate for these deficiencies. While conventional integrated models have been used to assimilate count data with surveys of survival, fecundity, and harvest, they can also assimilate ecological surveys that have differing spatio-temporal regions and observational uncertainties. Motivated by independent aerial and ground surveys of lesser prairie-chicken, we developed an integrated modeling approach that assimilates density estimates derived from surveys with distinct sources of observational error into a joint framework that provides shared inference on spatio-temporal trends. We model these data using a Bayesian Markov melding approach and apply several data augmentation strategies for efficient sampling. In a simulation study, we show that our integrated model improved predictive performance relative to models for analyzing the surveys independently. We use the integrated model to facilitate prediction of lesser prairie-chicken density at unsampled regions and perform a sensitivity analysis to quantify the inferential cost associated with reduced survey effort.


Asunto(s)
Animales Salvajes , Animales , Teorema de Bayes , Encuestas y Cuestionarios , Simulación por Computador , Incertidumbre
8.
J Anim Ecol ; 92(6): 1230-1243, 2023 06.
Artículo en Inglés | MEDLINE | ID: mdl-37081640

RESUMEN

Sea otters are apex predators that can exert considerable influence over the nearshore communities they occupy. Since facing near extinction in the early 1900s, sea otters are making a remarkable recovery in Southeast Alaska, particularly in Glacier Bay, the largest protected tidewater glacier fjord in the world. The expansion of sea otters across Glacier Bay offers both a challenge to monitoring and stewardship and an unprecedented opportunity to study the top-down effect of a novel apex predator across a diverse and productive ecosystem. Our goal was to integrate monitoring data across trophic levels, space, and time to quantify and map the predator-prey interaction between sea otters and butter clams Saxidomus gigantea, one of the dominant large bivalves in Glacier Bay and a favoured prey of sea otters. We developed a spatially-referenced mechanistic differential equation model of butter clam dynamics that combined both environmental drivers of local population growth and estimates of otter abundance from aerial survey data. We embedded this model in a Bayesian statistical framework and fit it to clam survey data from 43 intertidal and subtidal sites across Glacier Bay. Prior to substantial sea otter expansion, we found that butter clam density was structured by an environmental gradient driven by distance from glacier (represented by latitude) and a quadratic effect of current speed. Estimates of sea otter attack rate revealed spatial heterogeneity in sea otter impacts and a negative relationship with local shoreline complexity. Sea otter exploitation of productive butter clam habitat substantially reduced the abundance and altered the distribution of butter clams across Glacier Bay, with potential cascading consequences for nearshore community structure and function. Spatial variation in estimated sea otter predation processes further suggests that community context and local environmental conditions mediate the top-down influence of sea otters on a given prey. Overall, our framework provides high-resolution insights about the interaction among components of this food web and could be applied to a variety of other systems involving invasive species, epidemiology or migration.


Asunto(s)
Bivalvos , Nutrias , Animales , Ecosistema , Teorema de Bayes , Cadena Alimentaria
9.
Biometrics ; 79(4): 3664-3675, 2023 12.
Artículo en Inglés | MEDLINE | ID: mdl-36715694

RESUMEN

The Alaskan landscape has undergone substantial changes in recent decades, most notably the expansion of shrubs and trees across the Arctic. We developed a Bayesian hierarchical model to quantify the impact of climate change on the structural transformation of ecosystems using remotely sensed imagery. We used latent trajectory processes to model dynamic state probabilities that evolve annually, from which we derived transition probabilities between ecotypes. Our latent trajectory model accommodates temporal irregularity in survey intervals and uses spatio-temporally heterogeneous climate drivers to infer rates of land cover transitions. We characterized multi-scale spatial correlation induced by plot and subplot arrangements in our study system. We also developed a Pólya-Gamma sampling strategy to improve computation. Our model facilitates inference on the response of ecosystems to shifts in the climate and can be used to predict future land cover transitions under various climate scenarios.


Asunto(s)
Cambio Climático , Ecosistema , Teorema de Bayes
10.
Ecol Evol ; 12(9): e9339, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-36188518

RESUMEN

Time-series data offer wide-ranging opportunities to test hypotheses about the physical and biological factors that influence species abundances. Although sophisticated models have been developed and applied to analyze abundance time series, they require information about species detectability that is often unavailable. We propose that in many cases, simpler models are adequate for testing hypotheses. We consider three relatively simple regression models for time series, using simulated and empirical (fish and mammal) datasets. Model A is a conventional generalized linear model of abundance, model B adds a temporal autoregressive term, and model C uses an estimate of population growth rate as a response variable, with the option of including a term for density dependence. All models can be fit using Bayesian and non-Bayesian methods. Simulation results demonstrated that model C tended to have greater support for long-lived, lower-fecundity organisms (K life-history strategists), while model A, the simplest, tended to be supported for shorter-lived, high-fecundity organisms (r life-history strategists). Analysis of real-world fish and mammal datasets found that models A, B, and C each enjoyed support for at least some species, but sometimes yielded different insights. In particular, model C indicated effects of predictor variables that were not evident in analyses with models A and B. Bayesian and frequentist models yielded similar parameter estimates and performance. We conclude that relatively simple models are useful for testing hypotheses about the factors that influence abundance in time-series data, and can be appropriate choices for datasets that lack the information needed to fit more complicated models. When feasible, we advise fitting datasets with multiple models because they can provide complementary information.

11.
Sci Rep ; 12(1): 12235, 2022 07 18.
Artículo en Inglés | MEDLINE | ID: mdl-35851284

RESUMEN

Joint species distribution models have become ubiquitous for studying species-environment relationships and dependence among species. Accounting for community structure often improves predictive power, but can also affect inference on species-environment relationships. Specifically, some parameterizations of joint species distribution models allow interspecies dependence and environmental effects to explain the same sources of variability in species distributions, a phenomenon we call community confounding. We present a method for measuring community confounding and show how to orthogonalize the environmental and random species effects in suite of joint species distribution models. In a simulation study, we show that community confounding can lead to computational difficulties and that orthogonalizing the environmental and random species effects can alleviate these difficulties. We also discuss the inferential implications of community confounding and orthogonalizing the environmental and random species effects in a case study of mammalian responses to the Colorado bark beetle epidemic in the subalpine forest by comparing the outputs from occupancy models that treat species independently or account for interspecies dependence. We illustrate how joint species distribution models that restrict the random species effects to be orthogonal to the fixed effects can have computational benefits and still recover the inference provided by an unrestricted joint species distribution model.


Asunto(s)
Escarabajos , Bosques , Animales , Colorado , Simulación por Computador , Mamíferos
12.
Mol Ecol ; 31(12): 3267-3285, 2022 06.
Artículo en Inglés | MEDLINE | ID: mdl-35501946

RESUMEN

Habitat fragmentation and degradation impacts an organism's ability to navigate the landscape, ultimately resulting in decreased gene flow and increased extinction risk. Understanding how landscape composition impacts gene flow (i.e., connectivity) and interacts with scale is essential to conservation decision-making. We used a landscape genetics approach implementing a recently developed statistical model based on the generalized Wishart probability distribution to identify the primary landscape features affecting gene flow and estimate the degree to which each component influences connectivity for Gunnison sage-grouse (Centrocercus minimus). We were interested in two spatial scales: among distinct populations rangewide and among leks (i.e., breeding grounds) within the largest population, Gunnison Basin. Populations and leks are nested within a landscape fragmented by rough terrain and anthropogenic features, although requisite sagebrush habitat is more contiguous within populations. Our best fit models for each scale confirm the importance of sagebrush habitat in connectivity, although the important sagebrush characteristics differ. For Gunnison Basin, taller shrubs and higher quality nesting habitat were the primary drivers of connectivity, while more sagebrush cover and less conifer cover facilitated connectivity rangewide. Our findings support previous assumptions that Gunnison sage-grouse range contraction is largely the result of habitat loss and degradation. Importantly, we report direct estimates of resistance for landscape components that can be used to create resistance surfaces for prioritization of specific locations for conservation or management (i.e., habitat preservation, restoration, or development) or as we demonstrated, can be combined with simulation techniques to predict impacts to connectivity from potential management actions.


Asunto(s)
Artemisia , Galliformes , Animales , Conservación de los Recursos Naturales/métodos , Ecosistema , Galliformes/genética , Fitomejoramiento , Codorniz
13.
Mov Ecol ; 10(1): 2, 2022 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-35033211

RESUMEN

BACKGROUND: Invasive reptiles pose a serious threat to global biodiversity, but early detection of individuals in an incipient population is often hindered by their cryptic nature, sporadic movements, and variation among individuals. Little is known about the mechanisms that affect the movement of these species, which limits our understanding of their dispersal. Our aim was to determine whether translocation or small-scale landscape features affect movement patterns of brown treesnakes (Boiga irregularis), a destructive invasive predator on the island of Guam. METHODS: We conducted a field experiment to compare the movements of resident (control) snakes to those of snakes translocated from forests and urban areas into new urban habitats. We developed a Bayesian hierarchical model to analyze snake movement mechanisms and account for attributes unique to invasive reptiles by incorporating multiple behavioral states and individual heterogeneity in movement parameters. RESULTS: We did not observe strong differences in mechanistic movement parameters (turning angle or step length) among experimental treatment groups. We found some evidence that translocated snakes from both forests and urban areas made longer movements than resident snakes, but variation among individuals within treatment groups weakened this effect. Snakes translocated from forests moved more frequently from pavement than those translocated from urban areas. Snakes translocated from urban areas moved less frequently from buildings than resident snakes. Resident snakes had high individual heterogeneity in movement probability. CONCLUSIONS: Our approach to modeling movement improved our understanding of invasive reptile dispersal by allowing us to examine the mechanisms that influence their movement. We also demonstrated the importance of accounting for individual heterogeneity in population-level analyses, especially when management goals involve eradication of an invasive species.

14.
Ecology ; 103(2): e03573, 2022 02.
Artículo en Inglés | MEDLINE | ID: mdl-34710235

RESUMEN

Optimal design procedures provide a framework to leverage the learning generated by ecological models to flexibly and efficiently deploy future monitoring efforts. At the same time, Bayesian hierarchical models have become widespread in ecology and offer a rich set of tools for ecological learning and inference. However, coupling these methods with an optimal design framework can become computationally intractable. Recursive Bayesian computation offers a way to substantially reduce this computational burden, making optimal design accessible for modern Bayesian ecological models. We demonstrate the application of so-called prior-proposal recursive Bayes to optimal design using a simulated data binary regression and the real-world example of monitoring and modeling sea otters in Glacier Bay, Alaska. These examples highlight the computational gains offered by recursive Bayesian methods and the tighter fusion of monitoring and science that those computational gains enable.


Asunto(s)
Nutrias , Proyectos de Investigación , Alaska , Animales , Teorema de Bayes , Modelos Teóricos
15.
J Fish Dis ; 45(1): 89-98, 2022 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-34585403

RESUMEN

Ecologically and economically valuable Pacific salmon and trout (Oncorhynchus spp.) are widespread and susceptible to the ectoparasite Salmincola californiensis (Dana). The range of this freshwater copepod has expanded, and in 2015, S. californiensis was observed in Blue Mesa Reservoir, Colorado, USA, an important kokanee salmon (O. nerka, Walbaum) egg source for sustaining fisheries. Few S. californiensis were detected on kokanee salmon in 2016 (<10% prevalence; 2 adult S. californiensis maximum). By 2020, age-3 kokanee salmon had 100% S. californiensis prevalence and mean intensity exceeding 50 adult copepods. Year and kokanee salmon age/maturity (older/mature) were consistently identified as significant predictors of S. californiensis prevalence/intensity. There was evidence that S. californiensis spread rapidly, but their population growth was maximized at the initiation (the first 2-3 years) of the invasion. Gills and heads of kokanee salmon carried the highest S. californiensis loads. S. californiensis population growth appears to be slowing, but S. californiensis expansion occurred concomitant with myriad environmental/biological factors. These factors and inherent variance in S. californiensis count data may have obscured patterns that continued monitoring of parasite-host dynamics, when S. californiensis abundance is more stable, might reveal. The rapid proliferation of S. californiensis indicates that in 5 years a system can go from a light infestation to supporting hosts carrying hundreds of parasites, and concern remains about the sustainability of this kokanee salmon population.


Asunto(s)
Copépodos , Enfermedades de los Peces , Parásitos , Animales , Proliferación Celular , Colorado , Enfermedades de los Peces/epidemiología , Salmón
16.
Biometrics ; 78(4): 1427-1440, 2022 12.
Artículo en Inglés | MEDLINE | ID: mdl-34143436

RESUMEN

Climate change is impacting both the distribution and abundance of vegetation, especially in far northern latitudes. The effects of climate change are different for every plant assemblage and vary heterogeneously in both space and time. Small changes in climate could result in large vegetation responses in sensitive assemblages but weak responses in robust assemblages. But, patterns and mechanisms of sensitivity and robustness are not yet well understood, largely due to a lack of long-term measurements of climate and vegetation. Fortunately, observations are sometimes available across a broad spatial extent. We develop a novel statistical model for a multivariate response based on unknown cluster-specific effects and covariances, where cluster labels correspond to sensitivity and robustness. Our approach utilizes a prototype model for cluster membership that offers flexibility while enforcing smoothness in cluster probabilities across sites with similar characteristics. We demonstrate our approach with an application to vegetation abundance in Alaska, USA, in which we leverage the broad spatial extent of the study area as a proxy for unrecorded historical observations. In the context of the application, our approach yields interpretable site-level cluster labels associated with assemblage-level sensitivity and robustness without requiring strong a priori assumptions about the drivers of climate sensitivity.


Asunto(s)
Cambio Climático , Ecosistema , Teorema de Bayes , Alaska , Plantas
17.
Mov Ecol ; 9(1): 34, 2021 Jun 30.
Artículo en Inglés | MEDLINE | ID: mdl-34193294

RESUMEN

BACKGROUND: Reintroducing predators is a promising conservation tool to help remedy human-caused ecosystem changes. However, the growth and spread of a reintroduced population is a spatiotemporal process that is driven by a suite of factors, such as habitat change, human activity, and prey availability. Sea otters (Enhydra lutris) are apex predators of nearshore marine ecosystems that had declined nearly to extinction across much of their range by the early 20th century. In Southeast Alaska, which is comprised of a diverse matrix of nearshore habitat and managed areas, reintroduction of 413 individuals in the late 1960s initiated the growth and spread of a population that now exceeds 25,000. METHODS: Periodic aerial surveys in the region provide a time series of spatially-explicit data to investigate factors influencing this successful and ongoing recovery. We integrated an ecological diffusion model that accounted for spatially-variable motility and density-dependent population growth, as well as multiple population epicenters, into a Bayesian hierarchical framework to help understand the factors influencing the success of this recovery. RESULTS: Our results indicated that sea otters exhibited higher residence time as well as greater equilibrium abundance in Glacier Bay, a protected area, and in areas where there is limited or no commercial fishing. Asymptotic spread rates suggested sea otters colonized Southeast Alaska at rates of 1-8 km/yr with lower rates occurring in areas correlated with higher residence time, which primarily included areas near shore and closed to commercial fishing. Further, we found that the intrinsic growth rate of sea otters may be higher than previous estimates suggested. CONCLUSIONS: This study shows how predator recolonization can occur from multiple population epicenters. Additionally, our results suggest spatial heterogeneity in the physical environment as well as human activity and management can influence recolonization processes, both in terms of movement (or motility) and density dependence.

18.
Ecol Evol ; 11(24): 18271-18287, 2021 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-35003672

RESUMEN

Merging robust statistical methods with complex simulation models is a frontier for improving ecological inference and forecasting. However, bringing these tools together is not always straightforward. Matching data with model output, determining starting conditions, and addressing high dimensionality are some of the complexities that arise when attempting to incorporate ecological field data with mechanistic models directly using sophisticated statistical methods. To illustrate these complexities and pragmatic paths forward, we present an analysis using tree-ring basal area reconstructions in Denali National Park (DNPP) to constrain successional trajectories of two spruce species (Picea mariana and Picea glauca) simulated by a forest gap model, University of Virginia Forest Model Enhanced-UVAFME. Through this process, we provide preliminary ecological inference about the long-term competitive dynamics between slow-growing P. mariana and relatively faster-growing P. glauca. Incorporating tree-ring data into UVAFME allowed us to estimate a bias correction for stand age with improved parameter estimates. We found that higher parameter values for P. mariana minimum growth under stress and P. glauca maximum growth rate were key to improving simulations of coexistence, agreeing with recent research that faster-growing P. glauca may outcompete P. mariana under climate change scenarios. The implementation challenges we highlight are a crucial part of the conversation for how to bring models together with data to improve ecological inference and forecasting.

19.
Conserv Biol ; 35(4): 1174-1185, 2021 08.
Artículo en Inglés | MEDLINE | ID: mdl-33319392

RESUMEN

Private lands provide key habitat for imperiled species and are core components of function protectected area networks; yet, their incorporation into national and regional conservation planning has been challenging. Identifying locations where private landowners are likely to participate in conservation initiatives can help avoid conflict and clarify trade-offs between ecological benefits and sociopolitical costs. Empirical, spatially explicit assessment of the factors associated with conservation on private land is an emerging tool for identifying future conservation opportunities. However, most data on private land conservation are voluntarily reported and incomplete, which complicates these assessments. We used a novel application of occupancy models to analyze the occurrence of conservation easements on private land. We compared multiple formulations of occupancy models with a logistic regression model to predict the locations of conservation easements based on a spatially explicit social-ecological systems framework. We combined a simulation experiment with a case study of easement data in Idaho and Montana (United States) to illustrate the utility of the occupancy framework for modeling conservation on private land. Occupancy models that explicitly accounted for variation in reporting produced estimates of predictors that were substantially less biased than estimates produced by logistic regression under all simulated conditions. Occupancy models produced estimates for the 6 predictors we evaluated in our case study that were larger in magnitude, but less certain than those produced by logistic regression. These results suggest that occupancy models result in qualitatively different inferences regarding the effects of predictors on conservation easement occurrence than logistic regression and highlight the importance of integrating variable and incomplete reporting of participation in empirical analysis of conservation initiatives. Failure to do so can lead to emphasizing the wrong social, institutional, and environmental factors that enable conservation and underestimating conservation opportunities in landscapes where social norms or institutional constraints inhibit reporting.


La incorporación de las tierras privadas a la planeación de la conservación regional y nacional ha sido un reto a pesar de su importancia como hábitat para especies en peligro y como componentes nucleares de las redes funcionales de áreas protegidas. La identificación de las localidades en donde sea probable que los propietarios privados participen en las iniciativas de conservación puede ayudar a evitar conflictos costosos y a aclarar las compensaciones entre los beneficios ecológicos y los costos sociopolíticos. La evaluación empírica y espacialmente explícita de los factores asociados con la conservación en tierras privadas es una herramienta emergente usada para la identificación de oportunidades de conservación en el futuro. Sin embargo, la mayoría de los datos sobre la conservación en tierras privadas es reportada voluntariamente y está incompleta, lo cual complica realizar estas evaluaciones. Usamos una aplicación novedosa de los modelos de ocupación para analizar la presencia de la mitigación por conservación en tierras privadas. Comparamos diferentes formulaciones de los modelos de ocupación con un modelo de regresión logística para predecir las localidades de la mitigación por conservación con base en un marco de trabajo de un sistema socioecológico espacialmente explícito. Combinamos un experimento de simulación con un estudio de caso sobre datos de mitigación en Idaho y Montana (Estados Unidos) para ilustrar la utilidad del marco de trabajo de ocupación para el modelado de la conservación en tierras privadas. Los modelos de ocupación que consideraron explícitamente la variación en los reportes produjeron estimados de los predictores que estuvieron sustancialmente menos sesgados que los estimados producidos por la regresión logística bajo todas las condiciones simuladas. Los modelos de ocupación produjeron estimaciones para seis predictores que evaluamos en nuestro estudio de caso, los cuales fueron mayores en magnitud pero menos certeros que aquellos producidos por la regresión logística. Estos resultados sugieren que los modelos de ocupación tienen como resultado inferencias cualitativamente diferentes a la regresión logística con respecto a los efectos de los predictores sobre la presencia de mitigación por conservación y resaltan la importancia de la integración de los reportes variables e incompletos sobre la participación dentro del análisis empírico de las iniciativas de conservación. Si se falla en lo anterior se puede terminar enfatizando el factor social, institucional y ambiental equivocado que permite la conservación, además de subestimar las oportunidades de conservación en paisajes en donde las normas sociales o las restricciones institucionales inhiben el reporte de datos.


Asunto(s)
Conservación de los Recursos Naturales , Ecosistema , Biodiversidad , Simulación por Computador , Costos y Análisis de Costo , Montana , Estados Unidos
20.
Proc Biol Sci ; 287(1940): 20202219, 2020 12 09.
Artículo en Inglés | MEDLINE | ID: mdl-33290672

RESUMEN

An urgent challenge facing biologists is predicting the regional-scale population dynamics of species facing environmental change. Biologists suggest that we must move beyond predictions based on phenomenological models and instead base predictions on underlying processes. For example, population biologists, evolutionary biologists, community ecologists and ecophysiologists all argue that the respective processes they study are essential. Must our models include processes from all of these fields? We argue that answering this critical question is ultimately an empirical exercise requiring a substantial amount of data that have not been integrated for any system to date. To motivate and facilitate the necessary data collection and integration, we first review the potential importance of each mechanism for skilful prediction. We then develop a conceptual framework based on reaction norms, and propose a hierarchical Bayesian statistical framework to integrate processes affecting reaction norms at different scales. The ambitious research programme we advocate is rapidly becoming feasible due to novel collaborations, datasets and analytical tools.


Asunto(s)
Evolución Biológica , Dinámica Poblacional , Teorema de Bayes , Biodiversidad , Biología , Cambio Climático , Ecosistema
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