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Background: Vibrio vulnificus (V. vulnificus) is a deadly opportunistic human pathogen with high mortality worldwide. Notably, climate warming is likely to expand its geographical range and increase the infection risk for individuals in coastal regions. However, due to the absence of comprehensive surveillance systems, the emergence and characteristics of clinical V. vulnificus isolates remain poorly understood in China. Methods: In this study, we investigate antibiotic resistance, virulence including serum resistance, and hemolytic ability, as well as molecular characteristics of 21 V. vulnificus isolates collected from patients in Ningbo, China. Results and discussion: The results indicate that all isolates have been identified as potential virulent vcg C type, with the majority (16 of 21) classified as 16S rRNA B type. Furthermore, these isolates exhibit a high level of antibiotic resistance, with 66.7% resistance to more than three antibiotics and 61.9% possessing a multiple antibiotic resistance (MAR) index exceeding 0.2. In terms of virulence, most isolates were categorized as grade 1 in serum resistance, with one strain, S12, demonstrating intermediate sensitivity in serum resistance, belonging to grade 3. Whole genome analysis disclosed the profiles of antibiotic resistance genes (ARGs) and virulence factors (VFs) in these strains. The strains share substantial VF genes associated with adherence, iron uptake, antiphagocytosis, toxin, and motility. In particular, key VFs such as capsule (CPS), lipopolysaccharide (LPS), and multifunctional autoprocessing repeats-in-toxin (MARTX) are prevalent in all isolates. Specifically, S12 possesses a notably high number of VF genes (672), which potentially explains its higher virulence. Additionally, these strains shared six ARGs, namely, PBP3, adeF, varG, parE, and CRP, which likely determine their antibiotic resistance phenotype. Conclusion: Overall, our study provides valuable baseline information for clinical tracking, prevention, control, and treatment of V. vulnificus infections.
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Shale gas condensate is a burgeoning unconventional resource with adsorbed methane (CH4) as its dominant component. Successful evaluation of marine shale gas gives limited insights into the evaluation of continental shale gas condensate due to their different occurrence patterns of organic matter and inorganic minerals and resultant contributions to pore development and CH4 ad-/desorption capability. To address this issue, we employed an advanced low-temperature oxygen plasma (LTOP) technology to extract organic matter from the continental shaly matrix. Results showed that the continental shaly matrix contains more clay minerals and less quartz, and develops fewer pores and fractures than typical marine shaly matrix. The organic matter-hosted pores instead of inorganic mineral-hosted pores are more weighted to the pore development in the continental shaly matrix. However, the inorganic minerals of the continental shaly matrix contribute more to CH4 adsorption capability than the organic matter, which could be attributed to the higher density of available adsorption sites toward CH4. Besides, the CH4 ad-/desorption hysteresis is more pronounced for the organic matter-free continental shaly matrix than the raw continental shaly matrix, which is attributed to the remarkable CH4 adsorption-induced clay mineral swelling. Overall, the effects of inorganic minerals in CH4 adsorption and desorption, particularly clay minerals, are crucial for continental shale gas condensate exploration and production.
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Antibody pairs-based immunoassay platforms served as essential and effective tools in the field of pathogen detection. However, the cumbersome preparation and limited detection sensitivity of antibody pairs challenge in establishment of a highly sensitive detection platform. In this study, using COVID-19 testing as a case, we utilized readily accessible nanobodies as detection antibodies and further proposed an accurate design concept with a more scientific and efficient screening strategy to obtain ultrasensitive antibody pairs. We employed nanobodies capable of binding different antigenic epitopes of the nucleocapsid (NP) or receptor-binding domain (RBD) antigens sandwich as substitutes for monoclonal antibodies (mAbs) sandwich in fast detection formats and utilized time-resolved fluorescence (TRF) microspheres as the signal probe. Consequently, we developed a multi-epitope nanobody sandwich-based fluorescence lateral flow immunoassay (FLFA) strip. Our results suggest that the NP antigen had a detection limit of 12.01pg/mL, while the RBD antigen had a limit of 6.51 pg/mL using our FLFA strip. Based on double mAb sandwiches, the values presented herein demonstrated 4 to 32-fold enhancements in sensitivity, and 32 to 256-fold enhancements compared to commercially available antigen lateral flow assay kits. Furthermore, we demonstrated the excellent characteristics of the proposed test strip, including its specificity, stability, accuracy, and repeatability, which underscores its the prospective utility. Indeed, these findings indicate that our established screening strategy along with the multi-epitope nanobody sandwich mode provides an optimized strategy in the field of pathogen detection.
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Técnicas Biosensibles , COVID-19 , SARS-CoV-2 , Anticuerpos de Dominio Único , Anticuerpos de Dominio Único/inmunología , Anticuerpos de Dominio Único/química , COVID-19/diagnóstico , COVID-19/inmunología , COVID-19/virología , SARS-CoV-2/inmunología , SARS-CoV-2/aislamiento & purificación , Humanos , Técnicas Biosensibles/métodos , Anticuerpos Antivirales/inmunología , Anticuerpos Antivirales/sangre , Límite de Detección , Inmunoensayo/métodos , Anticuerpos Monoclonales/inmunología , Anticuerpos Monoclonales/química , Prueba de COVID-19/métodos , Prueba Serológica para COVID-19/métodos , Antígenos Virales/inmunologíaRESUMEN
Microplastics (MPs) are widespread environmental contaminants that have been detected in animals and humans. However, their toxic effects on terrestrial mammals and the underlying mechanisms are still not well understood. Herein, we explored the role of gut microbiota in mediating the toxicity of micro- and nano-sized polystyrene plastics (PS-MPs/PS-NPs) using an antibiotic depleted mice model. The results showed that PS-MPs and PS-NPs exposure disrupted the composition and structure of the gut microbiota. Specifically, these particles led to an increase in pathogenic Esherichia-shigella, while depleting probiotics such as Akkermansia and Lactobacillus. Comparatively, PS-NPs particles had more pronounced effect, leading to obviously shifted the colon transcriptional profiles characterized by inducing the enrichment of colon metabolism and immune-related pathways (i.e., upregulated in genes like udgh, ugt1a1, ugt1a6a, ugt1a7c and ugt2b34). Additionally, both PS-MPs and PS-NPs induced oxidative stress, gut-liver damage and systemic inflammation in mice. Mechanistically, we confirmed that PS particles disturbed gut microbiota, activating TLR2-My88-NF-κB pathway to trigger the release of inflammatory cytokine IL-1ß and TNF-α. The damage and inflammation caused by both size of PS particles was alleviated when the gut microbiota was depleted. In conclusion, our findings deepen the understanding of the molecule mechanisms by which gut microbiota mediate the toxicity of PS particles, informing health implications of MPs pollution.
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Microbioma Gastrointestinal , Microplásticos , Poliestirenos , Animales , Microbioma Gastrointestinal/efectos de los fármacos , Poliestirenos/toxicidad , Ratones , Microplásticos/toxicidad , Nanopartículas/toxicidad , Nanopartículas/química , Estrés Oxidativo/efectos de los fármacos , Tamaño de la Partícula , Inflamación/inducido químicamente , Contaminantes Ambientales/toxicidad , Masculino , FN-kappa B/metabolismoRESUMEN
Antibiotic resistant bacteria (ARB) and antibiotic resistance genes (ARGs) are prevalent in various environments on livestock farms, including livestock waste, soil, and groundwater. Contamination of groundwater by ARB and ARGs in livestock farms is a growing concern as it may have potentially huge risks to human health. However, the source of groundwater-borne ARB and ARGs in animal farms remains largely unknown. In this study, different types of samples including groundwater and its potential contamination sources from aboveground (pig feces, wastewater, and soil) from both working and abandoned swine feedlots in southern China were collected and subjected to metagenomic sequencing and ARB isolation. The source tracking based on metagenomic analysis revealed that 56-95 % of ARGs in groundwater was attributable to aboveground sources. Using metagenomic assembly, we found that 45 ARGs predominantly conferring resistance to aminoglycosides, sulfonamides, and tetracyclines could be transferred from the aboveground sources to groundwater, mostly through plasmid-mediated horizontal gene transfer. Furthermore, the full-length nucleotide sequences of sul1, tetA, and TEM-1 detected in ARB isolates exhibited the close evolutionary relationships between aboveground sources and groundwater. Some isolated strains of antibiotic-resistant Pseudomonas spp. from aboveground sources and groundwater had the high similarity (average nucleotide identity > 99 %). Notably, the groundwater-borne ARGs were identified as mainly carried by bacterial pathogens, potentially posing risks to human and animal health. Overall, this study underscores the dissemination of ARGs from aboveground sources to groundwater in animal farms and associated risks.
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Farmacorresistencia Microbiana , Agua Subterránea , Ganado , Agua Subterránea/microbiología , Animales , Farmacorresistencia Microbiana/genética , Granjas , Porcinos , China , Antibacterianos/farmacología , Genes Bacterianos , Aguas Residuales/microbiología , Farmacorresistencia Bacteriana/genéticaRESUMEN
Microplastic (MP) pollution poses a significant threat to marine ecosystem and seafood safety. However, comprehensive and comparable assessments of MP profiles and their ecological and health in Chinese farming oysters are lacking. This study utilized laser infrared imaging spectrometer (LDIR) to quantify MPs in oysters and its farming seawater at 18 sites along Chinese coastlines. Results revealed a total of 3492 MPs in farmed oysters and seawater, representing 34 MP types, with 20-100 µm MP fragments being the dominant. Polyurethane (PU) emerged as the predominant MP type in oysters, while polysulfones were more commonly detected in seawater. Notably, oysters from the Bohai Sea exhibited a higher abundance of MPs (13.62 ± 2.02 items/g) and estimated daily microplastic intake (EDI, 2.14 ± 0.26 items/g/kg·bw/day), indicating a greater potential health risk in the area. Meanwhile, seawater from the Yellow Sea displayed a higher level (193.0 ± 110.7 items/L), indicating a greater ecological risk in this region. Given the pervasiveness and abundance of PU and its high correlation with other MP types, we proposed PU as a promising indicator for monitoring and assessing the risk MP pollution in mariculture in China. These findings provide valuable insights into the extent and characteristics of MP pollution in farmed oysters and seawater in China.
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Acuicultura , Monitoreo del Ambiente , Microplásticos , Ostreidae , Agua de Mar , Contaminantes Químicos del Agua , Animales , Agua de Mar/análisis , China , Contaminantes Químicos del Agua/análisis , Ostreidae/química , Microplásticos/análisis , Medición de RiesgoRESUMEN
A novel Novosphingobium species, designated strain B2638T, was isolated from mangrove sediments which was collected from Beibu Gulf, Beihai, P. R. China. The isolate could grow in the presence of chlorpyrifos. Phylogenetic analysis based on 16S rRNA gene sequence revealed that the isolate belonged to the genus Novosphingobium, showing 99.9% sequence similarity with N. decloroationis 502str22T and less than 98% similarity with other type strain of species of this genus. Molecular typing by BOX-PCR divided strain B2638T and N. declorationis 502str22T into two clusters and indicated that they were not identical. Genomic comparison referenced by values of the DNA-DNA hybridization (dDDH) and the average nucleotide identity (ANI) between strain B2638T and its close phylogenetic neighbors were 20.0-29.5% and 75.3-85.3%, respectively, that were lower than proposed thresholds for bacterial species delineation. The major fatty acids (> 10%) were identified as C18:1 ω7c, C17:1 iso ω9c and C16:0. The main polar lipids contained diphosphatidylglycerol, phosphatidylethanolamine, sphingoglycolipid, phosphatidyl glycerol, unidentified lipid and unidentified aminolipid. Results from phenotypic, chemotaxonomic and genotypic analyses proposed that strain B2638T (= MCCC 1K07406T = KCTC 72968 T) is represented a novel species in the genus Novosphingobium, for which the names Novosphingobium beihaiensis sp. nov. is proposed.
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Plaguicidas , Sphingomonadaceae , Filogenia , ARN Ribosómico 16S/genética , Técnicas de Tipificación Bacteriana , Análisis de Secuencia de ADN , Ácidos Grasos , ADN , ADN Bacteriano/genética , Fosfolípidos , Hibridación de Ácido NucleicoRESUMEN
Thangka images exhibit a high level of diversity and richness, and the existing deep learning-based image captioning methods generate poor accuracy and richness of Chinese captions for Thangka images. To address this issue, this paper proposes a Semantic Concept Prompt and Multimodal Feature Optimization network (SCAMF-Net). The Semantic Concept Prompt (SCP) module is introduced in the text encoding stage to obtain more semantic information about the Thangka by introducing contextual prompts, thus enhancing the richness of the description content. The Multimodal Feature Optimization (MFO) module is proposed to optimize the correlation between Thangka images and text. This module enhances the correlation between the image features and text features of the Thangka through the Captioner and Filter to more accurately describe the visual concept features of the Thangka. The experimental results demonstrate that our proposed method outperforms baseline models on the Thangka dataset in terms of BLEU-4, METEOR, ROUGE, CIDEr, and SPICE by 8.7%, 7.9%, 8.2%, 76.6%, and 5.7%, respectively. Furthermore, this method also exhibits superior performance compared to the state-of-the-art methods on the public MSCOCO dataset.
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Contamination of the environment with large amounts of residual oxytetracycline (OTC) and the corresponding resistance genes poses a potential threat to natural ecosystems and human health. In this study, an effective OTC-degrading strain, identified as Achromobacter denitrificans OTC-F, was isolated from activated sludge. In the degradation experiment, the degradation rates of OTC in the degradation systems with and without biochar addition were 95.01-100% and 73.72-99.66%, respectively. Biochar promotes the biodegradation of OTC, particularly under extreme environmental conditions. Toxicity evaluation experiments showed that biochar reduced biotoxicity and increased the proportion of living cells by 17.36%. Additionally, biochar increased the activity of antioxidant enzymes by 34.1-91.0%. Metabolomic analysis revealed that biochar promoted the secretion of antioxidant substances such as glutathione and tetrahydrofolate, which effectively reduced oxidative stress induced by OTC. This study revealed the mechanism at the molecular level and provided new strategies for the bioremediation of OTC in the environment.
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Achromobacter denitrificans , Oxitetraciclina , Humanos , Oxitetraciclina/metabolismo , Achromobacter denitrificans/metabolismo , Ecosistema , AntioxidantesRESUMEN
Streptomyces species are ubiquitous, Gram-positive, spore-forming bacteria with the ability to produce various clinically relevant compounds. The strain 4503 T was isolated from mangrove sediments, showing morphological and chemical properties which were consistent with those of members of the genus Streptomyces. Phylogenetic analysis based on 16S rRNA gene sequences revealed that the isolate was primarily identified as members of the genus Streptomyces, sharing more than 99% sequence identity to Streptomyces yatensis DSM 41771 T, S. antimycoticus NBRC 12839 T, and S. melanosporofaciens NBRC 13061 T. Average nucleotide identities (ANI) and digital DNA-DNA hybridization (dDDH) values between strain 4503 T and its close relatives were all below 95-96% and 75% of the novel species threshold, respectively. Results from phylogenetic, genomic, phenotypic, and chemotaxonomic characteristics analyses confirmed that the isolate represented a novel species of the genus Streptomyces, for which the name Streptomyces niphimycinicus sp. nov. 4503 T (= MCCC 1K04557T = JCM 34996 T) is proposed. The bioassay-guided fractionation of the extract of strain 4503 T resulted in the isolation of a known compound niphimycin C, which showed cytotoxic activity against nasopharyngeal carcinoma (NPC) cell lines TW03 and 5-8F with half maximal inhibitory concentration (IC50) values of 12.24 µg/mL and 9.44 µg/mL, respectively. Further experiments revealed that niphimycin C not only exhibited the capacity of anti-proliferation, anti-metastasis, induction of cell cycle arrest, and apoptosis, but was also able to increase the reactive oxygen species (ROS) production and regulate several signaling pathways in NPC cells. KEY POINTS: ⢠Strain 4503 T was classified as a novel species of Streptomyces. ⢠Niphimycin C correlates with the cytotoxic effect of strain 4503 T against NPC cells. ⢠Niphimycin C induces apoptosis, autophagic flux disruption and cell cycle arrest.
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Neoplasias Nasofaríngeas , Streptomyces , Humanos , Filogenia , ARN Ribosómico 16S/genética , ARN Ribosómico 16S/metabolismo , Carcinoma Nasofaríngeo/tratamiento farmacológico , Microbiología del Suelo , ADN Bacteriano/química , Técnicas de Tipificación Bacteriana , Streptomyces/metabolismo , Neoplasias Nasofaríngeas/tratamiento farmacológico , Ácidos Grasos/metabolismo , Análisis de Secuencia de ADNRESUMEN
Hypoxia contributes to the tumorigenesis and metastasis of the tumor. However, the detailed mechanisms underlying hypoxia and kidney renal clear cell carcinoma (KIRC) development and progression remain unclear. Here, we investigated the role of the system HIG1 hypoxia inducible domain family member 1 A (HIGD1A) in the proliferation and metastasis of KIRC and elucidated the underlying molecular mechanisms. The expression of HIGD1A is significantly downregulated in KIRC due to promoter hypermethylation. HIGD1A could serve as a valuable diagnostic biomarker in KIRC. In addition, ectopic overexpression of HIGD1A significantly suppressed the growth and invasive capacity of KIRC cells in vitro under normal glucose conditions. Interestingly, the suppressive efficacy in invasion is much more significant when depleted glucose, but not in proliferation. Furthermore, mRNA expression of HIGD1A positively correlates with CDH1 and EPCAM, while negatively correlated with VIM and SPARC, indicating that HIGD1A impedes invasion of KIRC by regulating epithelial-mesenchymal transition (EMT). Our data suggest that HIGD1A is a potential diagnostic biomarker and tumor suppressor in KIRC.
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Carcinoma de Células Renales , Neoplasias Renales , Humanos , Biomarcadores , Carcinoma de Células Renales/patología , ADN , Riñón/patología , Neoplasias Renales/patologíaRESUMEN
Members of the genus Novosphingobium were frequently isolated from polluted environments and possess great bioremediation potential. Here, three species, designated B2637T, B2580T and B1949T, were isolated from mangrove sediments and might represent novel species in the genus Novosphingobium based on a polyphasic taxonomy study. Phylogenomic analysis revealed that strains B2580T, B1949T and B2637T clustered with Novosphingobium naphthalenivorans NBRC 102051T, 'N. profundi' F72 and N. decolorationis 502str22T, respectively. The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between isolates and their closely related species were less than 94 and 54â%, respectively, all below the threshold of species discrimination. The sizes of the genomes of isolates B2580T, B2637T and B1949T ranged from 4.4 to 4.6 Mb, containing 63.3-66.4â% G+C content. Analysis of their genomic sequences identified genes related to pesticide degradation, heavy-metal resistance, nitrogen fixation, antibiotic resistance and sulphur metabolism, revealing the biotechnology potential of these isolates. Except for B2637T, B1949T and B2580T were able to grow in the presence of quinalphos. Results from these polyphasic taxonomic analyses support the affiliation of these strains to three novel species within the genus Novosphingobium, for which we propose the name Novosphingobium album sp. nov. B2580T (=KCTC 72967T=MCCC 1K04555T), Novosphingobium organovorum sp. nov. B1949T (=KCTC 92158T=MCCC 1K03763T) and Novosphingobium mangrovi sp. nov. B2637T (KCTC 72969T=MCCC 1K04460T).
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Ácidos Grasos , Plaguicidas , Ácidos Grasos/química , Compuestos Organofosforados , Análisis de Secuencia de ADN , Filogenia , Composición de Base , Técnicas de Tipificación Bacteriana , ADN Bacteriano/genética , ARN Ribosómico 16S/genética , Hibridación de Ácido Nucleico , FosfolípidosRESUMEN
The contradiction between population growth and soil degradation has been increasingly prominent, such that novel fertilizers (e.g., biochar and microbial fertilizers) should be urgently developed. Biochar is a promising fertilizer carrier for microbial fertilizers due to its porous structure. However, the preparation and mechanisms of the effects of biochar-based microbial fertilizers have been rarely investigated. In this study, biochar, Bacillus, and exogenous N-P-K fertilizers served as the raw materials to prepare biochar-based microbial fertilizers (BCMFs) by optimizing the preparation methods and the process parameters. Moreover, the release patterns of N-P-K were analyzed. A pot experiment was performed on pakchoi to examine the effect of the BCMFs and explore its synergistic effect on soil fertility. The results of this study indicated that adsorption by biochar maintained bacterial activity, whereas the granulation process reduced bacterial activity. The adsorption-granulation process increased the content of total nitrogen and organic matter in the soil while enhancing the slow-release effect of the BCMFs. The Elovich model was capable of describing the nitrogen release of the BCMFs, including the diffusion and chemical processes. As indicated by the result of the column leaching experiment, the BCMFs stopped nutrient leaching more significantly than the conventional fertilizers (CF), especially in stopping N and P leaching. The use of the BCMFs improved the available soil nutrients and soil quality while enhancing the abundance of bacteria correlated with carbon and nitrogen metabolism in the soil. Moreover, a 20 % reduction in the use of the BCMFs did not significantly affect the soil available N and P and the growth status of pakchoi. The result of redundancy analysis indicated that the cation exchange capacity (CEC), NH4+-N, NO3--N, ß-glucosidase (BG), urease (URE), and alkaline phosphatase (AlkP) were the six critical environmental factors for the microbial community structure and could explain 94.8 % of the variance. The BCMFs up-regulated the levels of the above six factors, especially CEC and BG, thus improving the soil quality and enhancing the soil fertility.
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Fertilizantes , Suelo , Suelo/química , Fertilizantes/análisis , Carbón Orgánico/química , Nitrógeno/análisis , Bacterias , Nutrientes/análisis , Microbiología del SueloRESUMEN
Two novel actinobacteria with the ability to degrade kerosene, designated as B3033T and Y57T, were isolated from mangrove sediments in Tieshan Harbour, South China Sea. Both strains are Gram-staining-positive, non-spore forming, slow-growing, oxidase-positive, non-motile and aerobic. Their major cellular fatty acids were C16â:â0 and C18â:â1ω9c. Analysis of 16S rRNA gene sequences revealed the close relationship of strain B3033T to Mycobacterium kyogaense DSM 107316T (99.4â% nucleotide identity) and strain Y57T to Mycolicibacterium chubuense ATCC 27278T (98.7â%) and Mycolicibacterium rufum JS14T (98.7â%). Whole genome average nucleotide blast identity (ANI) and the digital DNA-DNA hybridization (dDDH) values between the two isolates and the type strains of species of the genus Mycolicibacterium were lower than 94 and 45â%, respectively, which were below the threshold values of 95â% (for ANI) and 70â% (for dDDH) recommended for bacterial species differentiation. The genome sequence of B3033T comprised a circular 11.0 Mb chromosome with a DNA G+C content of 68.1 mol%. Y57T had a genome size of 5.6 Mb and a DNA G+C content of 68.7 mol%. Genes involved in degradation of aromatic compounds and copper resistance were identified in the genomes of both strains that could improve their adaptive capacity to the mangrove environment. These results combined with those of chemotaxonomic analyses, MALDI-TOF MS profiles and phenotypic analyses support the affiliation of these strains to two novel species within the genus Mycolicibacterium, for which we propose the names Mycolicibacterium aurantiacum sp. nov. B3033T (=KCTC 49712T=MCCC 1K04526T) and Mycolicibacterium xanthum sp. nov. Y57T (=KCTC 49711T=MCCC 1K04875T) as type strains.
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Actinobacteria , Técnicas de Tipificación Bacteriana , Composición de Base , Cobre , ADN Bacteriano/genética , Ácidos Grasos/química , Queroseno , Hibridación de Ácido Nucleico , Nucleótidos , Oxidorreductasas/genética , Filogenia , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Sedimentos GeológicosRESUMEN
During the operation of navigation satellites, errors in the broadcast ephemeris orbits are caused by the influence of ingress factors and other factors. To address this phenomenon, this paper examines the use of the computational intelligence (CI) methods to implement track correction and to develop an optimized BP neural network model based on an improved particle swarm algorithm. The model improves the inertia weights and learning factor parameters of the particle swarm optimization (PSO) algorithm to improve the global optimization capability and accelerate the convergence speed. The improved PSO (IPSO) algorithm is used to perform a global optimization search for the hyperparameters of the BP neural network, and then the neural network model is trained by broadcast ephemeris Keplerian root number and regression parameters. The model is validated using the broadcast ephemeris data of the BDS-3 MEO and IGSO satellites, and the mean square error correction rate of multiple satellites with different correction models shows that the error correction rate of the IPSO-BPNN model can reach 70.2-84% and the error correction rate can be improved by 14.2-56.8% compared with the PSO-BPNN model. The proposed algorithm provides an important reference for BDS-3 and other global navigation satellite systems for improving the accuracy of satellite orbit determination.
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Redes Neurales de la Computación , Comunicaciones por Satélite , Algoritmos , Inteligencia ArtificialRESUMEN
Plasma lipidomics has been commonly used for biomarker discovery. Studies in cancer have suggested a significant alteration of circulating metabolite profiles which is correlated with cancer characteristics and treatment outcome. However, the lipidomics characteristics of nasopharyngeal carcinoma (NPC) have rarely been studied. We previously described the phenomenon of lipid droplet accumulation in NPC cells and showed that such accumulation could be regulated by latent infection of Epstein-Barr virus (EBV). Here, we compared the plasma lipidome of NPC patients to that of healthy controls by liquid chromatography-tandem mass spectrometry (LC-MS/MS). We found 19 lipids (e.g., phosphatidylinositols 18:0/20:4 and 18:0/18:2 and free fatty acid 22:6) to be remarkably decreased, whereas 2 lipids (i.e., diacylglycerols 16:0/16:1 and 16:0/20:3) to be increased, in the plasma of NPC patients, compared with controls. Different lipid profiles were also observed between patients with different titers of EBV antibodies (e.g., EA-IgA and VCA-IgA) as well as between patients with and without lymph node or distant organ metastasis. In conclusion, plasma lipidomics might help to differentiate NPC cases from controls, whereas EBV infection might influence the risk and prognosis of NPC through modulating lipid metabolism in both tumor cells and peripheral blood.
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A single model is often used to classify text data, but the generalization effect of a single model on text data sets is poor. To improve the model classification accuracy, a method is proposed that is based on a deep neural network (DNN), recurrent neural network (RNN), and convolutional neural network (CNN) and integrates multiple models trained by a deep learning network architecture to obtain a strong text classifier. Additionally, to increase the flexibility and accuracy of the model, various optimizer algorithms are used to train data sets. Moreover, to reduce the interference in the classification results caused by stop words in the text data, data preprocessing and text feature vector representation are used before training the model to improve its classification accuracy. The final experimental results show that the proposed model fusion method can achieve not only improved classification accuracy but also good classification effects on a variety of data sets.
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Aprendizaje Profundo , Algoritmos , Redes Neurales de la ComputaciónRESUMEN
OBJECTIVE: To explore the effectiveness of one-stage posterior medial corner (PMC) repair or reconstruction combined with anterior cruciate ligament (ACL) and posterior cruciate ligament (PCL) reconstruction in treating KD-â ¢M dislocation. METHODS: The clinical data of 15 patients with knee KD-â ¢M dislocation who met the selection criteria between January 2016 and July 2019 were retrospectively analyzed. There were 9 males and 6 females, aged 22-61 years (mean, 40.3 years). Injuries were caused by violence of flexion, valgus, and external rotation, including 10 cases of traffic accident injuries, 3 cases of crush injuries, 1 case of winch injury, and 1 case of explosion injury. The time from injury to operation ranged from 3 days to 6 months, with an average of 18.5 days. PMC repair combined with PCL+ACL reconstruction was performed in 10 cases in acute stage (within 3 weeks after injury), including 3 cases of irreducible dislocation. PMC+PCL+ACL reconstruction was performed in 5 cases with chronic dislocation. Before operation and at last follow-up, the knee joint function was evaluated by Lysholm score and International Knee Documentation Committee (IKDC) 2000 score. KT-3000 was used to evaluate the forward stability of the knee (calculated the difference of tibial anterior displacement of both knees), the X-ray films of the stress position of the knee joint was used to evaluate the valgus of the knee (calculated the difference of medial joint space width of both knees) and the backward stability (calculated the difference of tibial posterior displacement of both knees), and the internal and external rotation stability was evaluated by knee flexion 30° tibial external rotation and knee flexion 90° tibial internal rotation tests (calculated the difference of tibial internal rotation and the difference of tibial external rotation of both knees). RESULTS: The operation time was 120-240 minutes, with an average of 186.5 minutes. Patients were followed up 24-48 months, with an average of 27.4 months. There was no complication such as infection, deep vein thrombosis, vascular injury, or heterotopic ossification. At last follow-up, the Lysholm score, IKDC2000 score, the difference of tibial anterior displacement of both knees, the difference of medial joint space width of both knees, the difference of tibial posterior displacement of both knees, the difference of tibial internal rotation and the difference of tibial external rotation of both knees significantly improved when compared with preoperative ones ( P<0.05). According to the IKDC2000 valgus stability grading standard, there were 3 cases of grade C and 12 cases of grade D before operation, and 10 cases of grade A and 5 cases of grade B at last follow-up, which was significantly improved when compared with that before operation ( Z=-4.930, P=0.000). At last follow-up, the pivot shift tests of 15 patients were negative. The anterior and posterior drawer tests of 10 patients were negative, 5 patients had mild instability, both the anterior and posterior drawer tests were positive. CONCLUSION: KD-â ¢M dislocation of the knee joint can lead to the posterior medial and anterior instability. Acute dislocation combined with "dimple sign" requires surgical reduction as soon as possible to repair PMC and reconstruct PCL and ACL. In chronic patients, PMC is difficult to repair, it is recommended to reconstruct PMC, PCL, and ACL at one stage to improve knee joint stability. The early and middle effectiveness are satisfactory.
Asunto(s)
Lesiones del Ligamento Cruzado Anterior , Reconstrucción del Ligamento Cruzado Anterior , Inestabilidad de la Articulación , Lesiones del Ligamento Cruzado Anterior/cirugía , Artroscopía , Femenino , Humanos , Inestabilidad de la Articulación/diagnóstico , Inestabilidad de la Articulación/cirugía , Articulación de la Rodilla/diagnóstico por imagen , Articulación de la Rodilla/cirugía , Masculino , Estudios Retrospectivos , Resultado del TratamientoRESUMEN
A Gram-stain-negative, aerobic, milky white bacterium, designated B2012T, was isolated from mangrove sediment collected at Beibu Gulf, South China Sea. Antimicrobial activity assay revealed that the isolate possesses the capability of producing antibacterial compounds. Strain B2012T shared the highest 16S rRNA gene sequence relatedness (96.9-95.5â%) with members of the genus Acuticoccus. The isolate and all known Acuticoccus species contain Q-10 as the main respiratory quinone and have the same polar lipid components (phosphatidylcholine, unidentified glycolipid, unidentified lipid, unidentified amino lipid and phosphatidylglycerol). However, genomic relatedness referred by values of average nucleotide identity, digital DNA-DNA hybridization, average amino acid identity and the percentage of conserved proteins between strain B2012T and other type strains of the genus Acuticoccus were below the proposed thresholds for species discrimination. The genome of strain B2012T was assembled into 65 scaffolds with an N50 size of 244239 bp, resulting in a 5.5 Mb genome size. Eight secondary metabolite biosynthetic gene clusters were detected in this genome, including three non-ribosomal peptide biosynthetic loci encoding yet unknown natural products. Strain B2012T displayed moderately halophilic and alkaliphilic properties, growing optimally at 2-3â% (w/v) NaCl concentration and at pH 8-9. The major cellular fatty acids (>10â%) were anteiso-C15â:â0, C16â:â0 dimethyl aldehyde (DMA) and C16â:â0. Combined data from phenotypic, genotypic and chemotaxonomic analyses suggested that strain B2012T represents a novel species of the genus Acuticoccus, for which the name Acuticoccus mangrovi sp. nov. is proposed. The type strain of the type species is B2012T (=MCCC 1K04418T=KCTC 72962T).
Asunto(s)
Alphaproteobacteria/clasificación , Sedimentos Geológicos/microbiología , Filogenia , Alphaproteobacteria/aislamiento & purificación , Antibacterianos/farmacología , Técnicas de Tipificación Bacteriana , Composición de Base , China , ADN Bacteriano/genética , Ácidos Grasos/química , Hibridación de Ácido Nucleico , Fosfolípidos/química , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Ubiquinona/análogos & derivados , Ubiquinona/química , HumedalesRESUMEN
A novel moderately thermophilic and halophilic bacterium, designated strain M0105T, was isolated from mangrove sediment collected in the Beibu Gulf, south China. The isolate is Gram-negative, non-motile and rod-shaped bacterium with smooth colonies of pale-yellow appearance. Growth occurs at 15-46 °C (optimum 37-40 °C) and pH range of 6.0-10.0 (optimum pH 8.0-9.0). It required 1-7% NaCl (optimum 3-5%) for growth. Strain M0105T was affiliated to the family 'Rhodobacteraceae', sharing the highest 16S rRNA gene sequence similarity with Limibaculum halophilum CAU 1123T (96.8%). The major menaquinone Q-10 and the dominant unsaturated fatty acid (C18:1ω7) in this family were also detected in the strain M0105T. The genome sequence possesses a circular 4.1 Mb chromosome with a G + C content of 67.9%. Strain M0105T encoded many genes for cellular stress resistance and nutrient utilization, which could improve its adaptive capacity to the mangrove environment. Values of conserved proteins (POCP), average nucleotide identity, average amino acid identity (AAI) and DNA-DNA hybridization (dDDH) between the isolate and closely related species were below the proposed threshold for species discrimination. Information from phenotypic, chemotaxonomic and phylogenetic analyses proposed that strain M0105T should be assigned to a novel genus within the family 'Rhodobacteraceae'. Thus, we suggested that the strain M0105T represents a novel species in a new genus, for which the name Thermohalobaculum xanthum gen. nov., sp. nov. is proposed. The type strain of the type species is M0105T (= BGMRC 2019T = KCTC 52118T = MCCC 1K03767T = NBRC 112057T).