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1.
Immunity ; 2024 May 12.
Artículo en Inglés | MEDLINE | ID: mdl-38761804

RESUMEN

Recent evidence reveals hyper T follicular helper (Tfh) cell responses in systemic lupus erythematosus (SLE); however, molecular mechanisms responsible for hyper Tfh cell responses and whether they cause SLE are unclear. We found that SLE patients downregulated both ubiquitin ligases, casitas B-lineage lymphoma (CBL) and CBLB (CBLs), in CD4+ T cells. T cell-specific CBLs-deficient mice developed hyper Tfh cell responses and SLE, whereas blockade of Tfh cell development in the mutant mice was sufficient to prevent SLE. ICOS was upregulated in SLE Tfh cells, whose signaling increased BCL6 by attenuating BCL6 degradation via chaperone-mediated autophagy (CMA). Conversely, CBLs restrained BCL6 expression by ubiquitinating ICOS. Blockade of BCL6 degradation was sufficient to enhance Tfh cell responses. Thus, the compromised expression of CBLs is a prevalent risk trait shared by SLE patients and causative to hyper Tfh cell responses and SLE. The ICOS-CBLs axis may be a target to treat SLE.

2.
Artículo en Inglés | MEDLINE | ID: mdl-38656851

RESUMEN

The primary objective of interactive medical image segmentation systems is to achieve more precise segmentation outcomes with reduced human intervention. This endeavor holds significant clinical importance for both pre-diagnostic pathological assessments and prognostic recovery. Among the various interaction methods available, click-based interactions stand out as an intuitive and straightforward approach compared to alternatives such as graffiti, bounding boxes, and extreme points. To improve the model's ability to interpret click-based interactions, we propose a comprehensive interactive segmentation framework that leverages an iterative weighted loss function based on user clicks. To enhance the segmentation capabilities of the Plain-ViT backbone, we introduce a Residual Multi-Headed Self-Attention encoder with hierarchical inputs and residual connections, offering multiple perspectives on the data. This innovative architecture leads to a remarkable improvement in segmentation model performance. In this research paper, we assess the robustness of our proposed framework using a self-compiled T2-MRI image dataset of the prostate and three publicly available datasets containing images of other organs. Our experimental results convincingly demonstrate that our segmentation model surpasses existing state-of-the-art methods. Furthermore, the incorporation of an iterative loss function training strategy significantly accelerates the model's convergence rate during interactions. In the prostate dataset, we achieved an impressive Intersection over Union (IoU) score of 88.11% and Number of Clicks(NoC) at 80% are 7.03 clicks.

3.
J Med Chem ; 67(10): 8309-8322, 2024 May 23.
Artículo en Inglés | MEDLINE | ID: mdl-38669059

RESUMEN

Liver fibrosis is a common pathological feature of most chronic liver diseases with no effective drugs available. Phosphodiesterase 1 (PDE1), a subfamily of the PDE super enzyme, might work as a potent target for liver fibrosis by regulating the concentration of cAMP and cGMP. However, there are few PDE1 selective inhibitors, and none has been investigated for liver fibrosis treatment yet. Herein, compound AG-205/1186117 with the dihydropyrimidine scaffold was selected as the hit by virtual screening. A hit-to-lead structural modification led to a series of dihydropyrimidine derivatives. Lead 13h exhibited the IC50 of 10 nM against PDE1, high selectivity over other PDEs, as well as good safety properties. Administration of 13h exerted significant anti-liver fibrotic effects in bile duct ligation-induced fibrosis rats, which also prevented TGF-ß-induced myofibroblast differentiation in vitro, confirming that PDE1 could work as a potential target for liver fibrosis.


Asunto(s)
Fosfodiesterasas de Nucleótidos Cíclicos Tipo 1 , Diseño de Fármacos , Cirrosis Hepática , Inhibidores de Fosfodiesterasa , Pirimidinas , Animales , Fosfodiesterasas de Nucleótidos Cíclicos Tipo 1/antagonistas & inhibidores , Fosfodiesterasas de Nucleótidos Cíclicos Tipo 1/metabolismo , Cirrosis Hepática/tratamiento farmacológico , Cirrosis Hepática/patología , Pirimidinas/síntesis química , Pirimidinas/farmacología , Pirimidinas/química , Pirimidinas/uso terapéutico , Humanos , Ratas , Inhibidores de Fosfodiesterasa/farmacología , Inhibidores de Fosfodiesterasa/síntesis química , Inhibidores de Fosfodiesterasa/uso terapéutico , Inhibidores de Fosfodiesterasa/química , Masculino , Relación Estructura-Actividad , Ratas Sprague-Dawley , Simulación del Acoplamiento Molecular , Estructura Molecular
4.
Heliyon ; 10(3): e25030, 2024 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-38318024

RESUMEN

Objective: This study trains a U-shaped fully convolutional neural network (U-Net) model based on peripheral contour measures to achieve rapid, accurate, automated identification and segmentation of periprostatic adipose tissue (PPAT). Methods: Currently, no studies are using deep learning methods to discriminate and segment periprostatic adipose tissue. This paper proposes a novel and modified, U-shaped convolutional neural network contour control points on a small number of datasets of MRI T2W images of PPAT combined with its gradient images as a feature learning method to reduce feature ambiguity caused by the differences in PPAT contours of different patients. This paper adopts a supervised learning method on the labeled dataset, combining the probability and spatial distribution of control points, and proposes a weighted loss function to optimize the neural network's convergence speed and detection performance. Based on high-precision detection of control points, this paper uses a convex curve fitting to obtain the final PPAT contour. The imaging segmentation results were compared with those of a fully convolutional network (FCN), U-Net, and semantic segmentation convolutional network (SegNet) on three evaluation metrics: Dice similarity coefficient (DSC), Hausdorff distance (HD), and intersection over union ratio (IoU). Results: Cropped images with a 270 × 270-pixel matrix had DSC, HD, and IoU values of 70.1%, 27 mm, and 56.1%, respectively; downscaled images with a 256 × 256-pixel matrix had 68.7%, 26.7 mm, and 54.1%. A U-Net network based on peripheral contour characteristics predicted the complete periprostatic adipose tissue contours on T2W images at different levels. FCN, U-Net, and SegNet could not completely predict them. Conclusion: This U-Net convolutional neural network based on peripheral contour features can identify and segment periprostatic adipose tissue quite well. Cropped images with a 270 × 270-pixel matrix are more appropriate for use with the U-Net convolutional neural network based on contour features; reducing the resolution of the original image will lower the accuracy of the U-Net convolutional neural network. FCN and SegNet are not appropriate for identifying PPAT on T2 sequence MR images. Our method can automatically segment PPAT rapidly and accurately, laying a foundation for PPAT image analysis.

5.
Sensors (Basel) ; 24(2)2024 Jan 20.
Artículo en Inglés | MEDLINE | ID: mdl-38276357

RESUMEN

Sonar imaging technology is widely used in the field of marine and underwater monitoring because sound waves can be transmitted in elastic media, such as the atmosphere and seawater, without much interference. In underwater object detection, due to the unique characteristics of the monitored sonar image, and since the target in an image is often accompanied by its own shadow, we can use the relative relationship between the shadow and the target for detection. To make use of shadow-information-aided detection and realize accurate real-time detection in sonar images, we put forward a network based on a lightweight module. By using the attention mechanism with a global receptive field, the network can make the target pay attention to the shadow information in the global environment, and because of its exquisite design, the computational time of the network is greatly reduced. Specifically, we design a ShuffleBlock model adapted to Hourglass to make the backbone network lighter. The concept of CNN dimension reduction is applied to MHSA to make it more efficient while paying attention to global features. Finally, CenterNet's unreasonable distribution method of positive and negative samples is improved. Simulation experiments were carried out using the proposed sonar object detection dataset. The experimental results further verify that our improved model has obvious advantages over many existing conventional deep learning models. Moreover, the real-time monitoring performance of our proposed model is more conducive to the implementation in the field of ocean monitoring.

6.
IEEE J Biomed Health Inform ; 28(2): 753-764, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-37027681

RESUMEN

Chest imaging plays an essential role in diagnosing and predicting patients with COVID-19 with evidence of worsening respiratory status. Many deep learning-based approaches for pneumonia recognition have been developed to enable computer-aided diagnosis. However, the long training and inference time makes them inflexible, and the lack of interpretability reduces their credibility in clinical medical practice. This paper aims to develop a pneumonia recognition framework with interpretability, which can understand the complex relationship between lung features and related diseases in chest X-ray (CXR) images to provide high-speed analytics support for medical practice. To reduce the computational complexity to accelerate the recognition process, a novel multi-level self-attention mechanism within Transformer has been proposed to accelerate convergence and emphasize the task-related feature regions. Moreover, a practical CXR image data augmentation has been adopted to address the scarcity of medical image data problems to boost the model's performance. The effectiveness of the proposed method has been demonstrated on the classic COVID-19 recognition task using the widespread pneumonia CXR image dataset. In addition, abundant ablation experiments validate the effectiveness and necessity of all of the components of the proposed method.


Asunto(s)
COVID-19 , Neumonía , Humanos , Rayos X , Neumonía/diagnóstico por imagen , COVID-19/diagnóstico por imagen , Tórax/diagnóstico por imagen , Diagnóstico por Computador
7.
Front Plant Sci ; 14: 1139666, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-38148865

RESUMEN

Due to the unique structure of coconuts, their cultivation heavily relies on manual experience, making it difficult to accurately and timely observe their internal characteristics. This limitation severely hinders the optimization of coconut breeding. To address this issue, we propose a new model based on the improved architecture of Deeplab V3+. We replace the original ASPP(Atrous Spatial Pyramid Pooling) structure with a dense atrous spatial pyramid pooling module and introduce CBAM(Convolutional Block Attention Module). This approach resolves the issue of information loss due to sparse sampling and effectively captures global features. Additionally, we embed a RRM(residual refinement module) after the output level of the decoder to optimize boundary information between organs. Multiple model comparisons and ablation experiments are conducted, demonstrating that the improved segmentation algorithm achieves higher accuracy when dealing with diverse coconut organ CT(Computed Tomography) images. Our work provides a new solution for accurately segmenting internal coconut organs, which facilitates scientific decision-making for coconut researchers at different stages of growth.

8.
Sensors (Basel) ; 23(21)2023 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-37960601

RESUMEN

Based on the practical Byzantine fault tolerance algorithm (PBFT), a grouped multilayer PBFT consensus algorithm (GM-PBFT) is proposed to be applied to digital asset transactions in view of the problems with excessive communication complexity and low consensus efficiency found in the current consensus mechanism for digital asset transactions. Firstly, the transaction nodes are grouped by type, and each group can handle different types of consensus requests at the same time, which improves the consensus efficiency as well as the accuracy of digital asset transactions. Second, the group develops techniques like validation, auditing, and re-election to enhance Byzantine fault tolerance by thwarting malicious node attacks. This supervisory mechanism is implemented through the Raft consensus algorithm. Finally, the consensus is stratified for the nodes in the group, and the consensus nodes in the upper layer recursively send consensus requests to the lower layer until the consensus request reaches the end layer to ensure the consistency of the block ledger in the group. Based on the results of the experiment, the approach may significantly outperform the PBFT consensus algorithm when it comes to accuracy, efficiency, and preserving the security and reliability of transactions in large-scale network node digital transaction situations.

9.
Signal Transduct Target Ther ; 8(1): 370, 2023 09 21.
Artículo en Inglés | MEDLINE | ID: mdl-37735150

RESUMEN

Epstein‒Barr virus (EBV)-associated gastric cancer (GC) manifests an intriguing immunotherapy response. However, the cellular basis for EBV-imprinted tumour immunity and on-treatment response remains undefined. This study aimed to finely characterize the dynamic tumour immune contexture of human EBV (+) GC treated with immunochemotherapy by longitudinal scRNA-seq and paired scTCR/BCR-seq. EBV (+) GC exhibits an inflamed-immune phenotype with increased T-cell and B-cell infiltration. Immunochemotherapy triggers clonal revival and reinvigoration of effector T cells which step to determine treatment response. Typically, an antigen-specific ISG-15+CD8+ T-cell population is highly enriched in EBV (+) GC patients, which represents a transitory exhaustion state. Importantly, baseline intratumoural ISG-15+CD8+ T cells predict immunotherapy responsiveness among GC patients. Re-emerged clonotypes of pre-existing ISG-15+CD8+ T cells could be found after treatment, which gives rise to a CXCL13-expressing effector population in responsive EBV (+) tumours. However, LAG-3 retention may render the ISG-15+CD8+ T cells into a terminal exhaustion state in non-responsive EBV (+) tumours. In accordance, anti-LAG-3 therapy could effectively reduce tumour burden in refractory EBV (+) GC patients. Our results delineate a distinct implication of EBV-imprinted on-treatment T-cell immunity in GC, which could be leveraged to optimize the rational design of precision immunotherapy.


Asunto(s)
Linfocitos T CD8-positivos , Infecciones por Virus de Epstein-Barr , Humanos , Infecciones por Virus de Epstein-Barr/genética , Infecciones por Virus de Epstein-Barr/terapia , Herpesvirus Humano 4/genética , Agotamiento de Células T , Inmunoterapia
10.
Diagnostics (Basel) ; 13(16)2023 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-37627940

RESUMEN

Chronic diseases are increasingly major threats to older persons, seriously affecting their physical health and well-being. Hospitals have accumulated a wealth of health-related data, including patients' test reports, treatment histories, and diagnostic records, to better understand patients' health, safety, and disease progression. Extracting relevant information from this data enables physicians to provide personalized patient-treatment recommendations. While collaborative filtering techniques and classical algorithms such as naive Bayes, logistic regression, and decision trees have had notable success in health-recommendation systems, most current systems primarily inform users of their likely preferences without providing explanations. This paper proposes an approach of deep learning with a local interpretable model-agnostic explanations (LIME)-based interpretable recommendation system to solve this problem. Specifically, we apply the proposed approach to two chronic diseases common in older adults: heart disease and diabetes. After data preprocessing, we use six deep-learning algorithms to form interpretations. In the heart-disease data set, the actual model recommendation of multi-layer perceptron and gradient-boosting algorithm differs from the local model's recommendation of LIME, which can be used as its approximate prediction. From the feature importance of these two algorithms, it can be seen that the CholCheck, GenHith, and HighBP features are the most important for predicting heart disease. In the diabetes data set, the actual model predictions of the multi-layer perceptron and logistic-regression algorithm were little different from the local model's prediction of LIME, which can be used as its approximate recommendation. Moreover, from the feature importance of the two algorithms, it can be seen that the three features of glucose, BMI, and age were the most important for predicting heart disease. Next, LIME is used to determine the importance of each feature that affected the results of the calculated model. Subsequently, we present the contribution coefficients of these features to the final recommendation. By analyzing the impact of different patient characteristics on the recommendations, our proposed system elucidates the underlying reasons behind these recommendations and enhances patient trust. This approach has important implications for medical recommendation systems and encourages informed decision-making in healthcare.

11.
Comput Biol Med ; 165: 107374, 2023 10.
Artículo en Inglés | MEDLINE | ID: mdl-37611428

RESUMEN

BACKGROUND AND OBJECTIVE: Image-guided clinical diagnosis can be achieved by automatically and accurately segmenting prostate and prostatic cancer in male pelvic magnetic resonance imaging (MRI) images. For accurate tumor removal, the location, number, and size of prostate cancer are crucial, especially in surgical patients. The morphological differences between the prostate and tumor regions are small, the size of the tumor is uncertain, the boundary between the tumor and surrounding tissue is blurred, and the classification that separates the normal region from the tumor is uneven. Therefore, segmenting prostate and tumor on MRI images is challenging. METHODS: This study offers a new prostate and prostatic cancer segmentation network based on double branch attention driven multi-scale learning for MRI. To begin, the dual branch structure provides two input images with different scales for feature coding, as well as a multi-scale attention module that collects details from different scales. The features of the double branch structure are then entered into the built feature fusion module to get more complete context information. Finally, to give a more precise learning representation, each stage is built using a deep supervision mechanism. RESULTS: The results of our proposed network's prostate and tumor segmentation on a variety of male pelvic MRI data sets show that it outperforms existing techniques. For prostate and prostatic cancer MRI segmentation, the dice similarity coefficient (DSC) values were 91.65% and 84.39%, respectively. CONCLUSIONS: Our method maintains high correlation and consistency between automatic segmentation results and expert manual segmentation results. Accurate automatic segmentation of prostate and prostate cancer has important clinical significance.


Asunto(s)
Aprendizaje Profundo , Neoplasias de la Próstata , Humanos , Masculino , Próstata/diagnóstico por imagen , Imagen por Resonancia Magnética/métodos , Neoplasias de la Próstata/diagnóstico por imagen , Pelvis , Procesamiento de Imagen Asistido por Computador/métodos
12.
Plant Methods ; 19(1): 24, 2023 Mar 09.
Artículo en Inglés | MEDLINE | ID: mdl-36894949

RESUMEN

BACKGROUND: As one of the largest drupes in the world, the coconut has a special multilayered structure and a seed development process that is not yet fully understood. On the one hand, the special structure of the coconut pericarp prevents the development of external damage to the coconut fruit, and on the other hand, the thickness of the coconut shell makes it difficult to observe the development of bacteria inside it. In addition, coconut takes about 1 year to progress from pollination to maturity. During the long development process, coconut development is vulnerable to natural disasters, cold waves, typhoons, etc. Therefore, nondestructive observation of the internal development process remains a highly important and challenging task. In this study, We proposed an intelligent system for building a three-dimensional (3D) quantitative imaging model of coconut fruit using Computed Tomography (CT) images. Cross-sectional images of coconut fruit were obtained by spiral CT scanning. Then a point cloud model was built by extracting 3D coordinate data and RGB values. The point cloud model was denoised using the cluster denoising method. Finally, a 3D quantitative model of a coconut fruit was established. RESULTS: The innovations of this work are as follows. 1) Using CT scans, we obtained a total of 37,950 non-destructive internal growth change maps of various types of coconuts to establish a coconut data set called "CCID", which provides powerful graphical data support for coconut research. 2) Based on this data set, we built a coconut intelligence system. By inputting a batch of coconut images into a 3D point cloud map, the internal structure information can be ascertained, the entire contour can be drawn and rendered according to need, and the long diameter, short diameter and volume of the required structure can be obtained. We maintained quantitative observation on a batch of local Hainan coconuts for more than 3 months. With 40 coconuts as test cases, the high accuracy of the model generated by the system is proven. The system has a good application value and broad popularization prospects in the cultivation and optimization of coconut fruit. CONCLUSION: The evaluation results show that the 3D quantitative imaging model has high accuracy in capturing the internal development process of coconut fruits. The system can effectively assist growers in internal developmental observations and in structural data acquisition from coconut, thus providing decision-making support for improving the cultivation conditions of coconuts.

13.
Opt Express ; 31(5): 8937-8952, 2023 Feb 27.
Artículo en Inglés | MEDLINE | ID: mdl-36859998

RESUMEN

FBG array sensors have been widely used in the multi-point monitoring of large structures due to their excellent optical multiplexing capability. This paper proposes a cost-effective demodulation system for FBG array sensors based on a Neural Network (NN). The stress variations applied to the FBG array sensor are encoded by the array waveguide grating (AWG) as transmitted intensities under different channels and fed to an end-to-end NN model, which receives them and simultaneously establishes a complex nonlinear relationship between the transmitted intensity and the actual wavelength to achieve absolute interrogation of the peak wavelength. In addition, a low-cost data augmentation strategy is introduced to break the data size bottleneck common in data-driven methods so that the NN can still achieve superior performance with small-scale data. In summary, the demodulation system provides an efficient and reliable solution for multi-point monitoring of large structures based on FBG array sensors.

14.
Sensors (Basel) ; 23(3)2023 Jan 20.
Artículo en Inglés | MEDLINE | ID: mdl-36772238

RESUMEN

Autonomous driving systems are crucial complicated cyber-physical systems that combine physical environment awareness with cognitive computing. Deep reinforcement learning is currently commonly used in the decision-making of such systems. However, black-box-based deep reinforcement learning systems do not guarantee system safety and the interpretability of the reward-function settings in the face of complex environments and the influence of uncontrolled uncertainties. Therefore, a formal security reinforcement learning method is proposed. First, we propose an environmental modeling approach based on the influence of nondeterministic environmental factors, which enables the precise quantification of environmental issues. Second, we use the environment model to formalize the reward machine's structure, which is used to guide the reward-function setting in reinforcement learning. Third, we generate a control barrier function to ensure a safer state behavior policy for reinforcement learning. Finally, we verify the method's effectiveness in intelligent driving using overtaking and lane-changing scenarios.

15.
Neural Netw ; 161: 330-342, 2023 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-36774870

RESUMEN

In the downlink communication, it is currently challenging for ground users to cope with the uncertain interference from aerial intelligent jammers. The cooperation and competition between ground users and unmanned aerial vehicle (UAV) jammers leads to a Markov game problem of anti-UAV jamming. Therefore, a model-free method is adopted based on multi-agent reinforcement learning (MARL) to handle the Markov game. However, the benchmark MARL strategies suffer from dimension explosion and local optimal convergence. To solve these issues, a novel event-triggered multi-agent proximal policy optimization algorithm with Beta strategy (ETMAPPO) is proposed in this paper, which aims to reduce the dimension of information transmission and improve the efficiency of policy convergence. In this event-triggering mechanism, agents can learn to obtain appropriate observation in different moment, thereby reducing the transmission of valueless information. Beta operator is used to optimize the action search. It expands the search scope of policy space. Ablation simulations show that the proposed strategy achieves better global benefits with fewer dimension of information than benchmark algorithms. In addition, the convergence performance verifies that the well-trained ETMAPPO has the capability to achieve stable jamming strategies and stable anti-jamming strategies. This approximately constitutes the Nash equilibrium of the anti-jamming Markov game.


Asunto(s)
Aprendizaje , Dispositivos Aéreos No Tripulados , Refuerzo en Psicología , Algoritmos , Benchmarking
16.
J Pathol ; 260(2): 222-234, 2023 06.
Artículo en Inglés | MEDLINE | ID: mdl-36853094

RESUMEN

Autoimmune regulator (Aire) and TGF-ß signaling play important roles in central tolerance and peripheral tolerance, respectively, by eliminating or suppressing the activity of autoreactive T cells. We previously demonstrated that dnTGFßRII mice develop a defect in peripheral tolerance and a primary biliary cholangitis (PBC)-like disease. We hypothesized that by introducing the Aire gene to this model, we would observe a more severe PBC phenotype. Interestingly, however, we demonstrated that, while dnTGFßRII Aire-/- mice do manifest key histological and serological features of autoimmune cholangitis, they also develop mild to moderate interface hepatitis and show high levels of alanine transaminase (ALT) and antinuclear antibodies (ANA), characteristics of autoimmune hepatitis (AIH). To further understand this unique phenotype, we performed RNA sequencing (RNA-seq) and flow cytometry to explore the functional pathways and immune cell pathways in the liver of dnTGFßRII Aire-/- mice. Our data revealed enrichments of programmed cell death pathways and predominant CD8+ T cell infiltrates. Depleting CD8+ T cells using an anti-CD8α antibody significantly alleviated hepatic inflammation and prolonged the life span of these mice. Finally, RNA-seq data indicated the clonal expansion of hepatic CD8+ T cells. In conclusion, these mice developed an autoreactive CD8+ T-cell-mediated autoimmune cholangitis with concurrent hepatitis that exhibited key histological and serological features of the AIH-PBC overlap syndrome, representing a novel model for the study of tolerance and autoimmune liver disease. © 2023 The Pathological Society of Great Britain and Ireland.


Asunto(s)
Colangitis , Hepatitis Autoinmune , Cirrosis Hepática Biliar , Ratones , Animales , Hepatitis Autoinmune/genética , Hepatitis Autoinmune/metabolismo , Cirrosis Hepática Biliar/genética , Cirrosis Hepática Biliar/metabolismo , Linfocitos T CD8-positivos , Colangitis/genética , Colangitis/metabolismo
17.
PLoS One ; 18(2): e0282182, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-36827442

RESUMEN

INTRODUCTION: Computed tomography (CT) is a non-invasive examination tool that is widely used in medicine. In this study, we explored its value in visualizing and quantifying coconut. MATERIALS AND METHODS: Twelve coconuts were scanned using CT for three months. Axial CT images of the coconuts were obtained using a dual-source CT scanner. In postprocessing process, various three-dimensional models were created by volume rendering (VR), and the plane sections of different angles were obtained through multiplanar reformation (MPR). The morphological parameters and the CT values of the exocarp, mesocarp, endocarp, embryo, bud, solid endosperm, liquid endosperm, and coconut apple were measured. The analysis of variances was used for temporal repeated measures and linear and non-linear regressions were used to analyze the relationship between the data. RESULTS: The MPR images and VR models provide excellent visualization of the different structures of the coconut. The statistical results showed that the weight of coconut and liquid endosperm volume decreased significantly during the three months, while the CT value of coconut apple decreased slightly. We observed a complete germination of a coconut, its data showed a significant negative correlation between the CT value of the bud and the liquid endosperm volume (y = -2.6955x + 244.91; R2 = 0.9859), and a strong positive correlation between the height and CT value of the bud (y = 1.9576 ln(x) -2.1655; R2 = 0.9691). CONCLUSION: CT technology can be used for visualization and quantitative analysis of the internal structure of the coconut, and some morphological changes and composition changes of the coconut during the germination process were observed during the three-month experiment. Therefore, CT is a potential tool for analyzing coconuts.


Asunto(s)
Cocos , Tomografía Computarizada por Rayos X , Tomografía Computarizada por Rayos X/métodos , Endospermo , Tomógrafos Computarizados por Rayos X
18.
Med Phys ; 50(2): 906-921, 2023 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-35923153

RESUMEN

PURPOSE: Automatic segmentation of prostate magnetic resonance (MR) images is crucial for the diagnosis, evaluation, and prognosis of prostate diseases (including prostate cancer). In recent years, the mainstream segmentation method for the prostate has been converted to convolutional neural networks. However, owing to the complexity of the tissue structure in MR images and the limitations of existing methods in spatial context modeling, the segmentation performance should be improved further. METHODS: In this study, we proposed a novel 3D pyramid pool Unet that benefits from the pyramid pooling structure embedded in the skip connection (SC) and the deep supervision (DS) in the up-sampling of the 3D Unet. The parallel SC of the conventional 3D Unet network causes low-resolution information to be sent to the feature map repeatedly, resulting in blurred image features. To overcome the shortcomings of the conventional 3D Unet, we merge each decoder layer with the feature map of the same scale as the encoder and the smaller scale feature map of the pyramid pooling encoder. This SC combines the low-level details and high-level semantics at two different levels of feature maps. In addition, pyramid pooling performs multifaceted feature extraction on each image behind the convolutional layer, and DS learns hierarchical representations from comprehensive aggregated feature maps, which can improve the accuracy of the task. RESULTS: Experiments on 3D prostate MR images of 78 patients demonstrated that our results were highly correlated with expert manual segmentation. The average relative volume difference and Dice similarity coefficient of the prostate volume area were 2.32% and 91.03%, respectively. CONCLUSION: Quantitative experiments demonstrate that, compared with other methods, the results of our method are highly consistent with the expert manual segmentation.


Asunto(s)
Próstata , Neoplasias de la Próstata , Masculino , Humanos , Próstata/diagnóstico por imagen , Neoplasias de la Próstata/diagnóstico por imagen , Aprendizaje , Imagen por Resonancia Magnética , Redes Neurales de la Computación , Procesamiento de Imagen Asistido por Computador
19.
Opt Express ; 30(14): 24461-24480, 2022 Jul 04.
Artículo en Inglés | MEDLINE | ID: mdl-36237001

RESUMEN

For FPI sensor demodulation systems to be used in actual engineering measurement, they must have high performance, low cost, stability, and scalability. Excellent performance, however, necessitates expensive equipment and advanced algorithms. This research provides a new absolute demodulation system for FPI sensors that is high-performance and cost-effective. The reflected light from the sensor was demultiplexed into distinct channels using an array waveguide grating (AWG), with the interference spectrum features change translated as the variation of the transmitted intensity in each AWG channel. This data was fed into an end-to-end neural network model, which was utilized to interrogate multiple interference peaks' absolute peak wavelengths simultaneously. This architecturally simple network model can achieve remarkable generalization capabilities without training large-scale datasets using an appropriate data augmentation strategy. Experiments show that in simultaneous multi-wavelength and cavity length interrogations, the proposed system has the precision of up to ± 14 pm and ± 0.07 µm, respectively. The interrogation resolution can theoretically reach the pm level benefit from the neural network method. Furthermore, the system's outstanding demodulation repeatability and suitability were demonstrated. The system is expected to provide a high-performance and cost-effective, reliable solution for practical engineering applications.

20.
Front Genet ; 13: 943849, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36046245

RESUMEN

Background: Tumor-derived lactate can modulate the function of infiltrating immune cells to establish an immunosuppressive microenvironment that favors tumor progression. However, possible effects of lactate-related genes (LRGs) on the tumor microenvironment (TME) of breast cancer (BRCA) are still unknown. Methods: LRGs were comprehensively screened from lactate metabolism-related pathways. We correlated the expression of these LRGs with immune cell infiltrating characteristics in the TME and clinicopathological features of patients. We also established a lactate score for quantifying lactate metabolism patterns of cancers and to predict of recurrence-free survival (RFS). Results: We successfully constructed a lactate score that was an independent prognostic factor in BRCA. A low lactate score, which was associated with immune activation with increased CD8+ T cells infiltration levels, indicated an inflamed TME. Consistently, higher expression levels of inhibitory immune checkpoints, including PD-L1, LAG3, CTLA4, and TIM3, as observed from high lactate score subgroup, suggested an immune-desert phenotype as well as poor prognosis. Moreover, a low lactate score predicted the increased chemotherapeutic drug sensitivity and enhanced anti-PD-1 immunotherapy responses. Conclusion: The present study analyzed the potential roles of LRGs in the TME diversity and prognosis. These results will help to improve our understanding of the characteristics of TME immune cell infiltration and guide the development of more effective immunotherapy strategies.

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