In Situ Visualization of Lithium Ion Intercalation into MoS2 Single Crystals using Differential Optical Microscopy with Atomic Layer Resolution.

Atomic-level visualization of the intercalation of layered materials, such as metal chalcogenides, is of paramount importance in the development of high-performance batteries. In situ images of the dynamic intercalation of Li ions into MoS2 single-crystal electrodes were acquired for the first time, under potential control, with the use of a technique combining laser confocal microscopy with differential interference microscopy. Intercalation proceeded via a distinct phase separation of lithiated and delithiated regions. The process started at the atomic steps of the first layer beneath the selvedge and progressed in a layer-by-layer fashion. The intercalated regions consisted of Li-ion channels into which the newly inserted Li ions were pushed atom-by-atom. Interlayer diffusion of Li ions was not observed. Deintercalation was also clearly imaged and was found to transpire in a layer-by-layer mode. The intercalation and deintercalation processes were chemically reversible and can be repeated many times within a few atomic layers. Extensive intercalation of Li ions disrupted the atomically flat surface of MoS2 because of the formation of small lithiated domains that peeled off from the surface of the crystal. The current-potential curves of the intercalation and deintercalation processes were independent of the scan rate, thereby suggesting that the rate-determining step was not governed by Butler-Volmer kinetics.

Adsorption and assembly of ions and organic molecules at electrochemical interfaces: nanoscale aspects.

We describe the history of electrochemical scanning tunneling microscopy (STM) and advances made in this field during the past 20 years. In situ STM allows one to monitor various electrode processes, such as the underpotential deposition of copper and silver ions; the specific adsorption of iodine and sulfate/bisulfate ions; electrochemical dissolution processes of silicon and gold single-crystal surfaces in electrolyte solutions; and the molecular assembly of metalloporphyrins, metallophthalocyanines, and fullerenes, at atomic and/or molecular resolution. Furthermore, a laser confocal microscope, combined with a differential interference contrast microscope, enables investigation of the dynamics of electrochemical processes at atomic resolution.

Potential-induced phase transition of low-index Au single crystal surfaces in propylene carbonate solution.

In situ scanning tunneling microscopy (STM) was employed to examine the surface structures of Au(111), Au(100), and Au(110) single crystals in propylene carbonate (PC) containing tetrabutylammonium perchlorate (TBAP). All three electrodes exhibited potential-induced phase transition between the reconstructed and unreconstructed (1 × 1) structures at negative and positive potentials, respectively. The potential-induced phase transition of the Au electrode surfaces is attributed to the interaction of the TBA cation and the perchlorate anion at the electrode surface, which is similar to that which takes place in aqueous solutions. In addition to static atomic structures, dynamic processes of both the reconstruction and the lifting of the reconstruction were investigated by means of in situ STM. The lifting of reconstructed Au(111)-(√3 × 22) on Au(111) to the (1 × 1) structure is completed within 1 min at a positive potential. The diffusion of Au atoms on the Au(100) plane in the PC solution proceeds more rapidly than that in the aqueous solution, suggesting that the PC solvent plays an important role in accelerating the diffusion of Au atoms.

A new in situ optical microscope with single atomic layer resolution for observation of electrochemical dissolution of Au(111).

Monatomic steps with a height of 0.25 nm on ultraflat Au(111) surfaces during electrochemical dissolution can be seen for the first time by a laser confocal microscope combined with a differential interference contrast microscope (LCM-DIM). Atomic force microscopy images were acquired in the same area in order to confirm that the step lines observed by LCM-DIM are mostly monatomic steps with the height of 0.25 nm. Successively recorded LCM-DIM images indicated that the anodic dissolution of Au(111) takes place only at step edges in solutions containing chloride anions at potentials near the onset of anodic current.

Substrate-induced varied conformation and molecular assemblies: in situ STM observation of beta-substituted oligothiophene adlayers on Au(111).

The adsorption of 3,3'''-dihexyl-2,2':5',2'':5'',2'''-quaterthiophene (4T) molecules on an Au(111) electrode was examined by using in situ scanning tunneling microscopy in 0.10 M HClO(4), revealing internal molecular structures of the tetrathiophene backbones and the hexyl side chains. The 4T admolecules were packed in lamellae with their molecular axis aligned along the main axis of the Au(111) substrate and their hexyl side chains interdigitated to enhance intermolecular interaction. Dynamics of molecular organization incurred by the shifting of potential was also observed in this study. By examining and comparing the adsorption of 4T on HOPG and Au(111), we address the role of the substrate in understanding the arrangement of 4T admolecules.

Direct observation of conformational changes of beta-substituted duodecithiophene on a Au(111)-(square root(3) x 22) substrate using in situ electrochemical STM in 0.1 M HClO4.

The adsorption of hexahexylduodecithiophene (12T) on a Au(111) electrode was investigated by using cyclic voltammetry (CV) and in situ electrochemical scanning tunneling microscopy (EC-STM) in 0.10 M HClO(4). Potential control at 0.20 V (vs RHE) revealed adlayer structures of mostly folded and rarely angular (oblique) and extended conformations on a reconstructed Au(111)-(square root(3) x 22) surface. The angular and extended conformations predominate when the electrode potential is increased to 0.35 and 0.60 V. Folded structures are still evident, but dynamic STM studies showed unfolding of this conformation. With molecular STM imaging of 12T adlayers, we address the packing arrangement and conformational changes of 12T admolecules on the reconstructed Au(111) electrode surface.

Bimolecular two-dimensional organization of porphyrins on Au(111): site selective, metal ion-dependent adsorption of tetraphenylporphyrin.

Adlayers consisting of two components selected from the group of cobalt(II) tetraphenylporphyrin (CoTPP), copper(II) tetraphenylporphyrin (CuTPP), and zinc(II) tetraphenylporphyrin (ZnTPP) were prepared by immersing Au(111) substrate in a benzene solution containing those molecules. The bimolecular adlayers thus prepared were investigated in 0.1 M HClO4 by electrochemical scanning tunneling microscopy (EC-STM). The mixed adlayers consisting of CoTPP and CuTPP formed structurally ordered but compositionally disordered arrays on Au(111). The ratio of CoTPP to CuTPP molecules in the mixed adlayer was proportional to the ratio of CoTPP to CuTPP molecules in the solution phase. Accordingly, the composition of CoTPP and CuTPP in the adlayer on the Au(111) surface was independent of absolute concentrations of these species in the solution and immersion time. In contrast, the structural feature of the mixed adlayer consisting of CoTPP and ZnTPP was similar to that of the mixed adlayer of CoTPP and CuTPP when these adlayers were prepared in solutions containing those mixtures at a total concentration of 100 microM, whereas when the total concentration was lower, adsorption was site-selective depending on the coordinated metal ion. This finding indicates that the herringbone structure of reconstructed Au(111) served as a template for the bimolecular assembly of CoTPP and ZnTPP. The characteristic phase separation of CoTPP and ZnTPP molecules assisted by reconstructed Au(111) surface can be controlled by the subtle balance between kinetics and thermodynamics.

Organic field effect transistor using pentacene single crystals grown by a liquid-phase crystallization process.

Nearly perfect pentacene single crystals with wide terraces several micrometers in width were grown by crystallization from a pentacene-containing trichlorobenzene solution. Organic field-effect transistors (OFETs) were fabricated with the pentacene single crystals and characterized for their electrical properties. The field effect mobility was found to be in the range of 0.4-0.6 cm(2)/V x s, which is comparable to that of OFETs fabricated with pentacene single crystals prepared by a physical vapor-phase growth method. The results described in this paper clearly demonstrate that the crystallization of organic semiconductors from solution is a promising chemical method for device processing of OFETs.

Conformations of polyaniline molecules adsorbed on Au(111) probed by in situ STM and ex situ XPS and NEXAFS.

In situ scanning tunneling microscopy (STM), X-ray photoelectron spectroscopy (XPS), and near edge X-ray absorption fine structure (NEXAFS) have been used to examine the conformation of a monolayer of polyaniline (PAN) molecules produced on a Au(111) single-crystal electrode by anodization at 1.0 V [vs reversible hydrogen electrode (RHE)] in 0.10 M H(2)SO(4) containing 0.030 M aniline. The as-produced PAN molecules took on a well-defined linear conformation stretching for 500 A or more, as shown by in situ and ex situ STM. The XPS and NEXAFS results indicated that the linear PAN seen at 1.0 V assumed the form of an emeraldine salt made of PAN chains and (bi)sulfate anions. Shifting the potential from 1.0 to 0.7 V altered the shape of the PAN molecules from straight to crooked, which was ascribed to restructuring of the Au(111) electrified interface on the basis of voltammetric and XPS results. In situ STM showed that further decreasing the potential to 0.5 V transformed the crooked PAN threads into a mostly linear form again, with preferential alignment and formation of some locally ordered structures. PAN molecules could be reduced from emeraldine to leucoemeraldine as the potential was decreased to 0.2 V or less. In situ STM showed that the fully reduced PAN molecules were straight but mysteriously shortened to approximately 50 A in length. The conformation of PAN did not recuperate when the potential was shifted positively to 1.0 V.

Supramolecular pattern of fullerene on 2D bimolecular "chessboard" consisting of bottom-up assembly of porphyrin and phthalocyanine molecules.

Two-component adlayers consisting of zinc(II) phthalocyanine (ZnPc) and a metalloporphyrin, such as zinc(II) octaethylporphyrin (ZnOEP) or zinc(II) tetraphenylporphyrin (ZnTPP), were prepared by immersing either an Au(111) or Au(100) substrate in a benzene solution containing those molecules. The bimolecular adlayers thus prepared were investigated in 0.1 M HClO4 by cyclic voltammetry (CV) and electrochemical scanning tunneling microscopy (EC-STM). A supramolecularly organized "chessboard" structure was formed for the ZnPc and ZnOEP bimolecular array on Au(111), while characteristic nanohexagons were found in the ZnTPP and ZnOEP bimolecular adlayer. EC-STM revealed that the surface mobility and the molecular re-organization of ZnPc and ZnOEP on Au(111) were tunable by manipulating the electrode potential, whereas the ZnTPP and ZnOEP bimolecular array was independent of the electrode potential. A "bottom-up" hybrid assembly of fullerene molecules was formed successfully on an alternate array of bimolecular ZnPc and ZnOEP molecules. The bimolecular "chessboard" served as a template to form the supramolecular assembly of C60 by selective trapping in the open spaces. A supramolecular organization of ZnPc and ZnOEP was also found on the reconstructed Au(100)-(hex) surface. A highly ordered, compositionally disordered but alternate array of ZnPc and ZnOEP was formed on the reconstructed Au(100)-(hex) surface, indicating that the bimolecular adlayer structure is dependent on the atomic arrangement of underlying Au in the formation of supramolecular nanostructures composed of those molecules. On the bimolecular array consisting of ZnPc and ZnOEP on the Au(100)-(hex), no highly ordered supramolecular assembly of C60 was found, suggesting that the supramolecular assembly of C60 molecules is strongly dependent upon the bimolecular packing arrangement of ZnPc and ZnOEP.

Noncontact atomic force microscopy of perfect single crystals of pentacene prepared by crystallization from solution.

Nearly perfect single crystals of pentacene were grown from trichlorobenzene solution. The surface structure of pentacene single crystals has been investigated by frequency modulation atomic force microscopy. Molecularly flat and extraordinarily wide terraces, extended over the width of more than a few micrometers with monomolecular steps, were consistently observed, suggesting that those pentacene crystals were nearly perfect single crystals. Molecular packing arrangements were revealed by FM-AFM for the first time.

Epitaxial supramolecular assembly of fullerenes formed by using a coronene template on a Au(111) surface in solution.

Characteristic properties of the coronene layer formed on Au(111) for the epitaxial growth of various fullerenes are described. The electrochemical behavior of the coronene adlayer prepared by immersing a Au(111) substrate into a benzene solution containing coronene was investigated in 0.1 M HClO4. The as-prepared coronene adlayer on Au(111) revealed a well-defined (4 x 4) structure. Structural changes of the array of coronene molecules induced by potential manipulation were clearly observed by in situ scanning tunneling microscopy (STM). Supramolecularly assembled layers of fullerenes such as C60, C70, C60-C60 dumbbell dimer (C120), C60-C70 cross-dimer (C130), and C60 triangle trimer (C180) were formed on the well-defined coronene adlayer on the Au(111) surface by immersing the coronene-adsorbed Au(111) substrate into benzene solutions containing those molecules. The adlayers thus prepared were characterized by comparison with those which were directly attached to the Au(111) surface. The C60 molecules formed a honeycomb array with an internal structure in each C60 cage on the coronene adlayer, whereas C70 molecules were one-dimensionally arranged with the same orientations. The dimers, C120 and C130 molecules, formed an identical structure with c(11 x 4 radical3)rect symmetry. For the C130 cross-dimer molecule, C60 and C70 cages were clearly recognized at the molecular level. It was difficult to identify the adlayer of the C180 molecule directly attached to Au(111); however, individual C180 molecules could be recognized on the coronene-modified Au(111) surface. Thus, the adlayer structures of those fullerenes were strongly influenced by the underlying coronene adlayer, suggesting that the insertion of a coronene adlayer plays an important role in the formation of supramolecular assemblies of fullerenes.

Formation of supramolecular nanobelt arrays consisting of cobalt(II) "picket-fence" porphyrin on Au surfaces.

Adlayers of cobalt(II) 5,10,15,20-tetrakis(alpha,alpha,alpha,alpha-2-pivalamidophenyl)porphyrin (CoTpivPP) were prepared by immersing either Au(111) or Au(100) substrate in a benzene solution containing CoTpivPP molecules, and they were investigated in 0.1 M HClO4 and 0.1 M H2SO4 by cyclic voltammetry and in situ scanning tunneling microscopy (STM). The adlayer structure and electrochemical properties of CoTpivPP are compared to those of 5,10,15,20-tetraphenyl-21H,23H-porphine cobalt(II) (CoTPP). Characteristic nanobelt arrays consisting of CoTpivPP molecules were produced on both Au(111) and Au(100) surfaces. The stability of the nanobelt arrays was controlled by manipulating the electrode potential. On the other hand, the formation of nanobelt arrays consisting of O2-adducted CoTpivPP molecules depended upon the crystallographic orientation of Au. The state of O2 trapped in the cavity of CoTpivPP was distinctly observed in STM images as a bright spot in the nanobelt array formed on reconstructed Au(100)-(hex) surface, but not on Au(111) surface. This result suggests that the arrangement of underlying Au atoms plays an important role in the formation of nanobelt arrays with the sixth ligand coordination.

Electrochemical control of the structure of two-dimensional supramolecular organization consisting of phthalocyanine and porphyrin on a gold single-crystal surface.

Two-component adlayers consisting of cobalt(II) phthalocyanine (CoPc) and a metalloporphyrin such as 5,10,15,20-tetraphenyl-21H,23H-porphine copper(II) (CuTPP), 2,3,7,8,12,13,17,18-octaethyl-21H,23H-porphine copper(II) (CuOEP), or 5,10,15,20-tetraphenyl-21H,23H-porphine cobalt(II) (CoTPP) were prepared by immersing either an Au(111) or Au(100) substrate in a benzene solution containing those molecules. The mixed adlayers thus prepared were investigated in 0.1 M HClO4 by cyclic voltammetry (CV) and in situ scanning tunneling microscopy (STM). The composition of the mixed adlayer consisting of CoPc and CuTPP molecules was found to vary with immersion time. CoPc molecules displaced CuTPP molecules during the modification process with increasing immersion time, and the CuTPP molecules were completely displaced by CoPc molecules in the mixed solution after a prolonged modification time, during which the underlying Au(100) substrate underwent phase transition from the reconstructed (hex) lattice to the unreconstructed (1 x 1) lattice. The two-component adlayer of CoPc and CuTPP was found to form a supramolecular adlayer with the constituent molecules arranged alternately on Au(100)-(hex). The striped structure was stable on Au(100)-(hex) at or near the open circuit potential (OCP), whereas the mixed adlayer was disordered on Au(100)-(1 x 1) at potentials more positive than OCP, where the phase transition of the arrangement of underlying Au atoms (i.e., the lifting of reconstruction) was induced electrochemically. A similar two-component supramolecular adlayer consisting of CoPc and CuTPP was formed on Au(111). A highly ordered, compositionally disordered adlayer of CoTPP and CuTPP was formed on Au(100)-(hex), suggesting that the adlayer structure is independent of the coordinated central metal ion for the formation of supramolecular nanostructures composed of those molecules. A supramolecular organization of CoPc and CuOEP was also found on Au(111). The surface mobility and the molecular reorganization of CoPc and CuOEP on Au(111) were tuned by modulation of the electrode potential. It is concluded that molecular assemblies of the two-component structure consisting of phthalocyanine and porphyrin were controlled not only by the crystallographic orientation of Au but also by the modulation of electrochemical potential.

Adsorbed structures of 4,4'-bipyridine on Cu(111) in acid studied by STM and IR.

The adsorption of 4,4'-bipyridine (BiPy) on Cu(111) has been investigated in 0.1 M HClO4 by cyclic voltammetry, electrochemical scanning tunneling microscopy (STM), and surface-enhanced infrared adsorption spectroscopy (SEIRAS). Cyclic voltammetry showed the double layer region extending from -0.2 to 0.26 V and a pair of redox waves superposing on hydrogen evolution wave at more negative potentials. Diprotonated BiPy, BiPyH2(2+), is adsorbed flat on the Cu(111) (1 x 1) surface and forms a well-ordered monolayer with a (3 x 4) symmetry in the double-layer potential region. At more negative potential, BiPyH2(2+) is reduced to its monocation radical, BiPyH2(*+), and forms another well-ordered structure in which the radicals are stacked in molecular rows with a face-to-face self-dimer as the building unit. The SEIRA spectra of both BiPyH2(2+) and BiPyH2(*+) are dominated by gerade modes which should be IR-inactive for the centrosymmetric species. The breakdown of the selection rule of IR absorption is ascribed to the vibronic coupling associated with charge transfer between BiPyH2(2+) and the surface and between the radicals.

Ordered molecular assemblies of substituted bis(phthalocyaninato) rare earth complexes on Au(111): in situ scanning tunneling microscopy and electrochemical studies.

Substituted bis(phthalocyaninato) rare earth complexes ML2 (M = Y and Ce; L = [Pc(OC8H17)8]2, where Pc = phthalocyaninato) were adsorbed onto single crystalline Au(111) electrodes from benzene saturated with either YL2 or CeL2 complex at room temperature. In situ scanning tunneling microscopy (STM) and cyclic voltammetry (CV) were used to examine the structures and the redox reactions of these admolecules on Au(111) electrodes in 0.1 mol dm(-3) HClO4. The CVs obtained with YL2- and CeL2-coated Au(111) electrodes respectively contained two and three pairs of redox peaks between 0 and 1.0 V (versus reversible hydrogen electrode). STM molecular resolution revealed that YL2 and CeL2 admolecules were imaged as spherical protrusions separated by 2.3 nm, which suggests that they were oriented with their molecular planes parallel to the unreconstructed Au(111)-(1 x 1). Both molecules when adsorbing from approximately micromolar benzene dosing solutions produced mainly ordered arrays characterized as (8 x 5 radical3)rect (theta = 0.0125). The redox reactions occurring between 0.2 and 1.0 V caused no change in the adlayer, but they were desorbed or oxidized at the negative and positive potential limits. The processes of adsorption and desorption at the negative potentials were reversible to the modulation of potential. Electrochemical impedance spectroscopy (EIS) and CV measurements showed that YL2 and CeL2 adlayers could block the adsorption of perchlorate anions and mediating electron transfer at the Au(111) electrode, leading to the enhancement of charge transfer for the ferro/ferricyanide redox couple.

Formation of highly ordered porphyrin adlayers induced by electrochemical potential modulation.

Molecular self-assembly of porphyrin derivatives formed with intermolecular hydrogen bonding on the surface of Au(111) electrode in acidic solution can be controlled by varying the number of peripheral carboxy groups and the applied electrochemical potential.

Two-dimensional supramolecular arrangements of enantiomers and racemic modification of 1,1'-binaphthyl-2,2'-dicarboxylic acid.

Formation of adlayers of the optically active compound 1,1'-binaphthyl-2, 2'-dicarboxylic acid (BINAC) on iodine-modified Au (111) surfaces in perchloric acid was investigated by in situ scanning tunneling microscopy (STM). Highly ordered arrays formed on the surfaces via simple spontaneous adsorption from a solution of enantiomers or the racemic BINAC, in spite of the fact that BINAC has a three-dimensionally complex stereochemical structure. Adlayers of both enantiomers essentially shared the same enantiomorphous structure. Observed parameters of the rectangular unit cell lattice for arrays of both enantiomers of BINAC were a = 2.3 +/- 0.2 nm and b = 0.7 +/- 0.2 nm. On the other hand, racemic modification formed an entirely different adlayer, which consisted of an alternate alignment of the two enantiomers, with an oblique unit cell lattice with parameters of a = 1.2 +/- 0.2 nm, b = 0.8 +/- 0.1 nm, and 74 +/- 3 degrees . No domain composed of a single enantiomer was observed. The stronger hetero-intermolecular interactions of enantiomer couples led to the formation of an alternate arrangement in the array prepared by racemic modification.

Adsorption of formaldehyde on Pt(111) and Pt(100) electrodes: cyclic voltammetry and scanning tunneling microscopy.

The adsorption of formaldehyde (HCHO) on Pt(111) and Pt(100) electrodes was examined by cyclic voltammetry (CV) and in situ scanning tunneling microscopy (STM) in 0.1 M HClO(4). The extent of HCHO adsorption at both Pt electrodes was evaluated by comparing the CVs, particularly for the hydrogen adsorption and desorption between 0.05 and 0.4 V, obtained in 0.1 M HClO(4) with and without HCHO. The adsorption of HCHO on these Pt electrodes was significant only when [HCHO] >/= 10 mM. Adsorbed organic intermediate species acted as poisons, blocking Pt surfaces and causing delays in the oxidation of HCHO. Compared to Pt(111), Pt(100) was more prone to poisoning, as indicated by a 200 mV positive shift of the onset of HCHO oxidation. However, Pt(100) exhibited an activity 3 times higher than that of Pt(111), as indicated by the difference in peak current density of HCHO oxidation. Molecular resolution STM revealed highly ordered structures of Pt(111)-( radical7 x radical7)R19.1 degrees and Pt(100)-( radical2 x radical2) in the potential region between 0.1 and 0.3 V. Voltammetric measurements further showed that the organic poisons produced by HCHO adsorption behaved differently from the intentionally dosed CO admolecules, which supports the assumption for the formation of HCO or COH adspecies, rather than CO, as the poison. On both Pt electrodes, HCHO oxidation commenced preferentially at step sites at the onset potential of this reaction, but it occurred uniformly at the peak potentials.

Effect of underlying coronene and perylene adlayers for [60]fullerene molecular assembly.

Supramolecularly assembled layers of C60 on coronene- and perylene-modified Au(111) surfaces were investigated and the structure of the C60 adlayer was found to be strongly influenced by the underlying organic layers, suggesting that the latter underlying organic adlayers play an important role in the process of formation of the C60 molecular adlayer.