A Mitochondria-Targeting SIRT3 Inhibitor with Activity against Diffuse Large B Cell Lymphoma.

Diffuse large B-cell lymphomas (DLBCLs) are heterogeneous cancers that still require better and less toxic treatments. SIRT3, a member of the sirtuin family of NAD+-dependent protein deacylase, is critical for DLBCL growth and survival. A mitochondria-targeted SIRT3 small-molecule inhibitor, YC8-02, exhibits promising activity against DLBCL. However, YC8-02 has several limitations including poor solubility. Here, we report our medicinal chemistry efforts that led to an improved mitochondria-targeted SIRT3 inhibitor, SJ-106C, achieved by using a triethylammonium group, which helps to increase both solubility and SIRT3 inhibition potency. SJ-106C, while still inhibiting SIRT1 and SIRT2, is enriched in the mitochondria to help with SIRT3 inhibition. It is more active against DLBCL than other solid tumor cells and effectively inhibits DLBCL xenograft tumor growth. The findings provide useful insights for the development of SIRT3 inhibitors and mitochondrial targeting agents and further support the notion that SIRT3 is a promising druggable target for DLBCL.

Separation of Perfluorooctanoic Acid from Water Using Meso- and Macroporous Syndiotactic Polystyrene Gels.

Per- and polyfluoroalkyl substances are an emerging class of contaminants that are environmentally persistent, bioaccumulative, and noxious to human health. Among these, perfluorooctanoic acid (PFOA) molecules are widely found in ground and surface water sources. A novel high surface area, meso- and macroporous syndiotactic polystyrene (sPS) wet gel is used in this work as the adsorbent of PFOA molecules from water at environmentally relevant PFOA concentrations (≤1 µg/L) and cleanse water to below the U.S. EPA's 2023 health advisory limit of 4 parts per trillion (ppt). The sigmoidal shape of the PFOA adsorption isotherm indicates a two-step adsorption mechanism attributed to the strong affinity of PFOA molecules for the sPS surface and molecular aggregation at solid-liquid interfaces or within the pores of the sPS wet gel. The adsorption kinetics and the effects of sPS wet gel porosity, pore size, and pore volume on the removal efficiency are reported. The adsorption kinetics is seen to be strongly dependent on pore size and pore volume.

GS-441524-Diphosphate-Ribose Derivatives as Nanomolar Binders and Fluorescence Polarization Tracers for SARS-CoV-2 and Other Viral Macrodomains.

Viral macrodomains that can bind to or hydrolyze protein adenosine diphosphate ribosylation (ADP-ribosylation) have emerged as promising targets for antiviral drug development. Many inhibitor development efforts have been directed against the severe acute respiratory syndrome coronavirus 2 macrodomain 1 (SARS-CoV-2 Mac1). However, potent inhibitors for viral macrodomains are still lacking, with the best inhibitors still in the micromolar range. Based on GS-441524, a remdesivir precursor, and our previous studies, we have designed and synthesized potent binders of SARS-CoV-2 Mac1 and other viral macrodomains including those of Middle East respiratory syndrome coronavirus (MERS-CoV), Venezuelan equine encephalitis virus (VEEV), and Chikungunya virus (CHIKV). We show that the 1'-CN group of GS-441524 promotes binding to all four viral macrodomains tested while capping the 1″-OH of GS-441524-diphosphate-ribose with a simple phenyl ring further contributes to binding. Incorporating these two structural features, the best binders show 20- to 6000-fold increases in binding affinity over ADP-ribose for SARS-CoV-2, MERS-CoV, VEEV, and CHIKV macrodomains. Moreover, building on these potent binders, we have developed two highly sensitive fluorescence polarization tracers that only require nanomolar proteins and can effectively resolve the binding affinities of nanomolar inhibitors. Our findings and probes described here will facilitate future development of more potent viral macrodomain inhibitors.

Iso-ADP-Ribose Fluorescence Polarization Probe for the Screening of RNF146 WWE Domain Inhibitors.

Poly-ADP-ribosylation is an important protein post-translational modification with diverse biological consequences. After binding poly-ADP-ribose on axis inhibition protein 1 (AXIN1) through its WWE domain, RING finger protein 146 (RNF146) can ubiquitinate AXIN1 and promote its proteasomal degradation and thus the oncogenic WNT signaling. Therefore, inhibiting the RNF146 WWE domain is a potential antitumor strategy. However, due to a lack of suitable screening methods, no inhibitors for this domain have been reported. Here, we developed a fluorescence polarization (FP)-based competition assay for the screening of RNF146 WWE inhibitors. This assay relies on a fluorescently tagged iso-ADP-ribose tracer compound, TAMRA-isoADPr. We report the design and synthesis of this tracer compound and show that it is a high-affinity tracer for the RNF146 WWE domain. This provides a convenient assay and will facilitate the development of small-molecule inhibitors for the RNF146 WWE domain.

A Turn-On Fluorescent Amino Acid Sensor Reveals Chloroquine's Effect on Cellular Amino Acids via Inhibiting Cathepsin L.

Maintaining homeostasis of metabolites such as amino acids is critical for cell survival. Dysfunction of nutrient balance can result in human diseases such as diabetes. Much remains to be discovered about how cells transport, store, and utilize amino acids due to limited research tools. Here we developed a novel, pan-amino acid fluorescent turn-on sensor, NS560. It detects 18 of the 20 proteogenic amino acids and can be visualized in mammalian cells. Using NS560, we identified amino acids pools in lysosomes, late endosomes, and surrounding the rough endoplasmic reticulum. Interestingly, we observed amino acid accumulation in large cellular foci after treatment with chloroquine, but not with other autophagy inhibitors. Using a biotinylated photo-cross-linking chloroquine analog and chemical proteomics, we identified Cathepsin L (CTSL) as the chloroquine target leading to the amino acid accumulation phenotype. This study establishes NS560 as a useful tool to study amino acid regulation, identifies new mechanisms of action of chloroquine, and demonstrates the importance of CTSL regulation of lysosomes.

A Fluorescence Polarization Assay for Macrodomains Facilitates the Identification of Potent Inhibitors of the SARS-CoV-2 Macrodomain.

Viral macrodomains, which can bind to and/or hydrolyze adenine diphosphate ribose (ADP-ribose or ADPr) from proteins, have been suggested to counteract host immune response and be viable targets for the development of antiviral drugs. Therefore, developing high-throughput screening (HTS) techniques for macrodomain inhibitors is of great interest. Herein, using a novel tracer TAMRA-ADPr, an ADP-ribose compound conjugated with tetramethylrhodamine, we developed a robust fluorescence polarization assay for various viral and human macrodomains including SARS-CoV-2 Macro1, VEEV Macro, CHIKV Macro, human MacroD1, MacroD2, and PARP9 Macro2. Using this assay, we validated Z8539 (IC50 6.4 µM) and GS441524 (IC50 15.2 µM), two literature-reported small-molecule inhibitors of SARS-CoV-2 Macro1. Our data suggest that GS441524 is highly selective for SARS-CoV-2 Macro1 over other human and viral macrodomains. Furthermore, using this assay, we identified pNP-ADPr (ADP-ribosylated p-nitrophenol, IC50 370 nM) and TFMU-ADPr (ADP-ribosylated trifluoromethyl umbelliferone, IC50 590 nM) as the most potent SARS-CoV-2 Macro1 binders reported to date. An X-ray crystal structure of SARS-CoV-2 Macro1 in complex with TFMU-ADPr revealed how the TFMU moiety contributes to the binding affinity. Our data demonstrate that this fluorescence polarization assay is a useful addition to the HTS methods for the identification of macrodomain inhibitors.

Simultaneous inhibition of Sirtuin 3 and cholesterol homeostasis targets acute myeloid leukemia stem cells by perturbing fatty acid ß-oxidation and inducing lipotoxicity.

Outcomes for patients with acute myeloid leukemia (AML) remain poor due to the inability of current therapeutic regimens to fully eradicate disease-initiating leukemia stem cells (LSC). Previous studies have demonstrated that oxidative phosphorylation (OXPHOS) is an essential process that is targetable in LSC. Sirtuin 3 (SIRT3), a mitochondrial deacetylase with a multi-faceted role in metabolic regulation, has been shown to regulate OXPHOS in cancer models; however, it has not yet been studied in the context of LSC. Thus, we sought to identify if SIRT3 is important for LSC function. Using RNAi and a SIRT3 inhibitor (YC8-02), we demonstrate that SIRT3 is a critical target for the survival of primary human LSC but is not essential for normal human hematopoietic stem and progenitor cell function. In order to elucidate the molecular mechanisms by which SIRT3 is essential in LSC we combined transcriptomic, proteomic, and lipidomic approaches, showing that SIRT3 is important for LSC function through the regulation of fatty acid oxidation (FAO) which is required to support OXPHOS and ATP production in human LSC. Further, we discovered two approaches to further sensitize LSC to SIRT3 inhibition. First, we found that LSC tolerate the toxic effects of fatty acid accumulation induced by SIRT3 inhibition by upregulating cholesterol esterification. Disruption of cholesterol homeostasis sensitizes LSC to YC8-02 and potentiates LSC death. Second, SIRT3 inhibition sensitizes LSC to the BCL-2 inhibitor venetoclax. Together, these findings establish SIRT3 as a regulator of lipid metabolism and potential therapeutic target in primitive AML cells.

Meso- and Macroporous Polymer Gels for Efficient Adsorption of Block Copolymer Surfactants.

An understanding of surfactant adsorption at solid-liquid interfaces is important for solving many technological problems. This work evaluates surfactant adsorption abilities of high surface area (200-600 m2/g), high porosity (>90%), hierarchically structured open pore polymer gels. Specifically, the interactions of a nonionic block copolymer surfactant, poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide) (PEO-PPO-PEO), with three polymer gels, namely, syndiotactic polystyrene (sPS), polyimide (PI), and polyurea (PUA) offering different surface energy values, are evaluated at surfactant concentrations below and well above the critical micelle concentration (CMC). Two distinct surfactant adsorption behaviors are identified from the surface tension and nuclear magnetic resonance data. At concentrations below CMC, the surfactant molecules adsorb as a monolayer on polymer strands, inferred from the Langmuir-type adsorption isotherm, with the adsorbed amount increasing with the specific surface area of the polymer gel. The study reports for the first time that the gels show a strong surfactant adsorption above CMC, with the effective surfactant concentration in the gel reaching several folds of the CMC values. The effective surfactant concentration in the gel is analyzed using surfactant micelle size, polymer surface energy, and pore size of the gel. The findings of this study may have strong implications in liquid-liquid separation problems and in the removal of small dye molecules, heavy metal ions, and living organisms from aqueous streams.

A Review on Gel Polymer Electrolytes for Dye-Sensitized Solar Cells.

Significant growth has been observed in the research domain of dye-sensitized solar cells (DSSCs) due to the simplicity in its manufacturing, low cost, and high-energy conversion efficiency. The electrolytes in DSSCs play an important role in determining the photovoltaic performance of the DSSCs, e.g., volatile liquid electrolytes suffer from poor thermal stability. Although low volatility liquid electrolytes and solid polymer electrolytes circumvent the stability issues, gel polymer electrolytes with high ionic conductivity and enduring stability are stimulating substitutes for liquid electrolytes in DSSC. In this review paper, the advantages of gel polymer electrolytes (GPEs) are discussed along with other types of electrolytes, e.g., solid polymer electrolytes and p-type semiconductor-based electrolytes. The benefits of incorporating ionic liquids into GPEs are highlighted in conjunction with the factors that affect the ionic conductivity of GPEs. The strategies on the improvement of the properties of DSSCs based on GPE are also presented.

Imine as a linchpin approach for meta-C-H functionalization.

Despite the widespread applications of C-H functionalization, controlling site selectivity remains a significant challenge. Covalently attached directing groups (DGs) served as ancillary ligands to ensure ortho-, meta- and para-C-H functionalization over the last two decades. These covalently linked DGs necessitate two extra steps for a single C-H functionalization: introduction of DG prior to C-H activation and removal of DG post-functionalization. Here we report a temporary directing group (TDG) for meta-C-H functionalization via reversible imine formation. By overruling facile ortho-C-H bond activation by imine-N atom, a suitably designed pyrimidine-based TDG successfully delivered selective meta-C-C bond formation. Application of this temporary directing group strategy for streamlining the synthesis of complex organic molecules without any necessary pre-functionalization at the meta position has been explored.

Fabrication of Hollow and Porous Tin-Doped Indium Oxide Nanofibers and Microtubes via a Gas Jet Fiber Spinning Process.

We report the morphologies of tin-doped indium oxide (ITO) hollow microtubes and porous nanofibers produced from precursor solutions of polyvinylpyrrolidone (PVP), indium chloride (InCl3), and stannic chloride (SnCl4). The polymer precursor fibers are produced via a facile gas jet fiber (GJF) spinning process and subsequently calcined to produce ITO materials. The morphology shows strong dependence on heating rate in calcination step. Solid porous ITO nanofibers result from slow heating rates while hollow tubular ITO microfibers with porous shells are produced at high heating rates when calcined at a peak temperature of 700 °C. The mechanisms of formation of different morphological forms are proposed. The ITO fibers are characterized using several microscopy tools and thermogravimetric analysis. The concentration of inorganic salts in precursor solution is identified as a key factor in determining the porosity of the shell in hollow fibers. The data presented in this paper show that GJF method may be suitable for fabrication of hollow and multi-tubular metal oxide nanofibers from other inorganic precursor materials.

Continuous fabrication of core-shell aerogel microparticles using microfluidic flows.

This work focuses on fabrication of core-shell polyimide aerogel microparticles with and without a surfactant via oil-in-oil-in-oil (O/O/O) emulsion system aided by a simple microfluidic device. A double emulsion is formed through sequential, step-wise emulsification of co-flowing core and shell organic liquid streams in a simple microfluidic setup. The polyimide sol, introduced as the shell liquid, undergoes accelerated polymerization in a heated silicone oil bath to yield a porous polyimide shell around silicone oil core that eliminates the possibility of droplet coalescence or rupture. The core-shell gel microparticles are then isolated and supercritically dried to obtain core-shell aerogel microparticles. The diameter and shell thickness of hollow microparticles are studied as function of liquid flowrates in the microfluidic device and the viscosity of the shell liquid.

Strong and Flexible Composite Solid Polymer Electrolyte Membranes for Li-Ion Batteries.

A composite solid polymer electrolyte (CSPE) is studied in this work to alleviate the concerns associated with poor mechanical strength of a solid polymer electrolyte (SPE) system composed of poly(ethyleneglycol)diacrylate, an electrolyte lithium bis(trifluoromethane)sulfonamide, and a plasticizer succinonitrile. CSPE is fabricated by incorporating the ingredients of SPE in the macroporous membranes of syndiotactic polystyrene to render flexibility and mechanical robustness with a 6-fold increase in tensile strength over SPE. The data from differential scanning calorimetry and wide-angle X-ray diffraction confirm the amorphous nature of the polymeric domains of SPE that produce high room-temperature ionic conductivity of ∼0.43 mS/cm. The flexible CSPE membranes are used as the electrolyte in Li-ion battery (LIB) half cells in conjunction with lithium iron phosphate as the counter electrode. The use of CSPE helps expand the electrochemical window of the cell to 5 V, indicating strong potential in the fabrication of flexible rechargeable LIBs.

Coordination Assisted Distal C-H Alkylation of Fused Heterocycles.

Distal C-H bond functionalization of heterocycles remained extremely challenging with covalently attached directing groups (DG). Lack of proper site for DG attachment and inherent catalyst poisoning by heterocycles demand alternate routes for site selective functionalization of their distal C-H bonds. Utilizing non-productive coordinating property to hold the heterocycle into the cavity of a template system in a host-guest manner, we report distal C-H alkylation (C-5 of quinoline and thiazole, C-7 of benzothiazole and benzoxazole) of heterocycles. Upon complexation with heterocyclic substrate, nitrile DG in template directs the metal catalyst towards close vicinity of the specific distal C-H bond of the heterocycles. Our hypothesized pathway has been supported by various X-ray crystallographically characterized intermediates.

Direct meta-C-H Perfluoroalkenylation of Arenes Enabled by a Cleavable Pyrimidine-Based Template.

The development of efficient and mild methods for the synthesis of organofluorine compounds is of foremost interest in various fields of chemistry. A direct pyrimidine-based selective meta-C-H perfluoroalkenylation of arenes involving several commercially available perfluoroolefins is described. The synthetic versatility of the protocol is demonstrated by an extensive substrate scope including different benzylsulfonyl, alkylarene and phenylacetic acid scaffolds. The generality of this methodology including the meta-C-H perfluoroalkenylation of Ibuprofen, the facile cleavage of the directing group and gram-scale reactions are presented.

Surfactant-Free Process for the Fabrication of Polyimide Aerogel Microparticles.

This work focuses on the fabrication of polyimide aerogel microparticles of diameter 200-1000 µm from a surfactant-free, two-phase, silicone oil/dimethylformamide (DMF) oil-in-oil (O/O) system using a simple microfluidic device. The polyimide sol prepared in DMF is turned into droplets suspended in silicone oil in the microfluidic device. The droplets are guided to a heated silicone oil bath to accelerate sol-gel transition and imidization reactions, thereby yielding spherical, discrete gel microparticles that do not undergo coalescence. The discrete gel microparticles are isolated and supercritically dried to obtain aerogel microparticles. The microparticle size distribution shows dependence on dispersed and continuous phase flowrates in the microfluidic channels. The microparticle surface morphology shows dependence on the silicone oil bath temperature.

The Effect of Thin Film Adhesives on Mode I Interlaminar Fracture Toughness in Carbon Fiber Composites with Shape Memory Alloy Inserts.

Shape Memory Alloy (SMA) was placed within Polymer Matrix Composite (PMC) panels alongside film adhesives to examine bonding. Double cantilever beam (DCB) testing was performed using ASTM D5528. C-scanning was performed before testing, modal acoustic emissions (MAE) were monitored during testing, and microscopy performed post-test. Data was analyzed using modified beam theory (MBT), compliance calibration (CC) and modified compliance calibration (MCC) methods. Fracture toughness for control specimens was higher than previously reported due to fiber-bridging. Specimens with SMAs and adhesives stabilized crack propagation. Results revealed SMA-bridging; a phenomenon mimicking fiber-bridging which increased the load and fracture toughness of SMA specimens.

The Effect of Thin Film Adhesives on Mode II Interlaminar Fracture Toughness in Carbon Fiber Composites with Shape Memory Alloy Inserts.

A single sheet of nickel-titanium (NiTi) shape memory alloy (SMA) was introduced within an IM7/8552 polymer matrix composite (PMC) panel in conjunction with multiple thin film adhesives to promote the interfacial bond strength between the SMA and PMC. End notched flexure (ENF) testing was performed in accordance to ASTM D7905 method for evaluation of mode II interlaminar fracture toughness (GIIC) of unidirectional fiber-reinforced polymer matrix composites. Acoustic emissions (AE) were monitored during testing with two acoustic sensors attached to the specimens. The composite panels examined using scanning electron microscopy techniques after part failure. GIIC values for the control composite samples were found to be higher than those of samples with embedded SMA sheets. The presence of adhesives bonded to SMA sheets further diminished the GIIC values. AE values revealed poor bonding of the panels, with little to no signals during testing.

Solvent Effects on Tuning Pore Structures in Polyimide Aerogels.

This work evaluates the effects of solvents and a block copolymer surfactant on pore structures in polyimide aerogels synthesized via sol-gel reaction process. Specifically, cross-linked polyimide gel networks are synthesized in single or mixed solvents from a combination of dimethylformamide, N-methylpyrrolidone, and dimethylacetamide and supercritically dried to obtain aerogels. The bulk density, pore size, and mechanical properties of aerogels are determined. The results show that gel times are strongly dependent on the electron acceptance ability of the solvent system and concentration of the surfactant. At longer gel times, the polyimide strands coarsen and the pores in aerogel shift from predominantly mesoporous to macroporous state with corresponding reduction in compressive modulus. The block copolymer surfactant also slows down gelation and coarsens the polyimide strands but only weakly affects the compressive modulus of the aerogels.