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2.
Front Neurosci ; 15: 668293, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34867140

RESUMEN

Studying the molecular development of the human brain presents unique challenges for selecting a data analysis approach. The rare and valuable nature of human postmortem brain tissue, especially for developmental studies, means the sample sizes are small (n), but the use of high throughput genomic and proteomic methods measure the expression levels for hundreds or thousands of variables [e.g., genes or proteins (p)] for each sample. This leads to a data structure that is high dimensional (p ≫ n) and introduces the curse of dimensionality, which poses a challenge for traditional statistical approaches. In contrast, high dimensional analyses, especially cluster analyses developed for sparse data, have worked well for analyzing genomic datasets where p ≫ n. Here we explore applying a lasso-based clustering method developed for high dimensional genomic data with small sample sizes. Using protein and gene data from the developing human visual cortex, we compared clustering methods. We identified an application of sparse k-means clustering [robust sparse k-means clustering (RSKC)] that partitioned samples into age-related clusters that reflect lifespan stages from birth to aging. RSKC adaptively selects a subset of the genes or proteins contributing to partitioning samples into age-related clusters that progress across the lifespan. This approach addresses a problem in current studies that could not identify multiple postnatal clusters. Moreover, clusters encompassed a range of ages like a series of overlapping waves illustrating that chronological- and brain-age have a complex relationship. In addition, a recently developed workflow to create plasticity phenotypes (Balsor et al., 2020) was applied to the clusters and revealed neurobiologically relevant features that identified how the human visual cortex changes across the lifespan. These methods can help address the growing demand for multimodal integration, from molecular machinery to brain imaging signals, to understand the human brain's development.

3.
Neurosci Conscious ; 2017(1): nix014, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-29877514

RESUMEN

For centuries, people have asked questions to hand-held pendulums and interpreted their movements as responses from the divine. These movements occur due to the ideomotor effect, wherein priming or thinking of a motion causes muscle movements that end up swinging the pendulum. By associating particular swinging movements with "yes" and "no" responses, we investigated whether pendulums can aid decision-making and which personality traits correlate with this performance. Participants ( N=80 ) completed a visual detection task in which they searched for a target letter among rapidly presented characters. In the verbal condition, participants stated whether they saw the target in each trial. In the pendulum condition, participants instead mentally "asked" a hand-held pendulum whether the target was present; particular motions signified "yes" and "no". We measured the accuracy of their responses as well as their sensitivity and bias using signal detection theory. We also assessed four personality measures: locus of control (feelings of control over one's life), transliminality (sensitivity to subtle stimuli), need for cognition (preference for analytical thinking), and faith in intuition (preference for intuitive thinking). Overall, locus of control predicted verbal performance and transliminality predicted pendulum performance. Accuracy was low in both conditions (verbal: 57%, pendulum: 53%), but bias was higher in the verbal condition ( d=1.10 ). We confirmed this bias difference in a second study ( d=0.47 , N=40 ). Our results suggest that people have different decision strategies when using a pendulum compared to conscious guessing. These findings may help explain why some people can answer questions more accurately with pendulums and Ouija boards. More broadly, identifying the differences between ideomotor and verbal responses could lead to practical ways to improve decision-making.

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