RESUMEN
Neogastropoda is a group of marine organisms with an extremely wide distribution that is rich in species and economic and ornamental values, the classification of species in this order has been ongoing for a long time, but there is still a great controversy about whether this order is monophyletic. In this study, we obtained the complete mitogenome of Lophiotoma leucotropis by next-generation sequencing and analyzed the basic structural features of the genome, and we found that the number of genes was consistent with that of most of the Neogastropoda snails, containing 37 genes, including 13 protein-coding genes (PCGs), 2 rRNAs, and 22 tRNAs. Analyzing base content, amino acid content, codon usage preference, and tRNA structure, the mitogenomes of eight species of Turridae were selected for analysis of selection pressures, and it was found that the evolution of species in this family was affected by purifying selection. In addition, by analyzing the rearrangement characteristics, it was found that the sequence of L. leucotropis was consistent with the Conoidea consensus order, and four of the eight species involved in the analysis showed rearrangements. Finally, we constructed a phylogenetic tree by combining PCGs of 60 species within Caenogastropoda and found Neogastropoda to be a monophyletic group, validating the results of morphological classification. The results will provide more references for the classification and species evolution of Neogastropoda, as well as phylogenetic analysis.
RESUMEN
Based on seasonal bottom trawl surveys in November 2015 (autumn), February (winter), May (spring) and August (summer) in 2016, the index of relative importance (IRI), Shannon index and Pianka index were used to analyze the breadth and overlap of spatio-temporal niche of major fish species in the Pishan waters off Zhejiang Province. Redundancy analysis and interspecific competition coefficient were used to examine the competition relationship and niche differentiation of those major fish species. The results showed that a total of 61 fish species were recorded throughout the year, which belonged to 13 orders, 29 families and 48 genera. A total of 19 species with IRI>100 were identified as major fish species. The temporal niche overlap value between Chelidonichthys kumu and Atule kalla was largest, indicating high temporal synchronization. Both the spatial niche overlap value and the spatio-temporal niche overlap value between Trpauchen vagina and Cynoglossus interruptus were largest, indicating that their spatial homology was high and that the use of spatial and temporal two-dimensional resource of both species were consistent. The percentage of species pairs with spatio-temporal niche overlap at the significant level (Qik>0.6) was only 5.8% in Pishan waters, indicating that the spatial and temporal distribution of those species were quite different. The overlap of spatio-temporal niche significantly varied across different seasons. The results of the interspecific competition coefficient were basically consistent with the niche overlap. Results of the redundancy analysis revealed the relationships between major fish species and environmental factors (temperature, salinity, dissolved oxygen), and further explained the niche diffe-rentiation among species.
Asunto(s)
Ecosistema , Peces , Animales , China , Humanos , Salinidad , Estaciones del AñoRESUMEN
BACKGROUND: Chlamydomonas reinhardtii is an ideal model organism not only for the study of basic metabolic processes in both plants and animals but also the production of biofuels including hydrogen. Transgenic analysis of C. reinhardtii is now well established and very convenient, but inducible exogenous gene expression systems remain under-studied. The most commonly used heat shock-inducible system has serious effects on algal cell growth and is difficult and costly to control in large-scale culture. Previous studies of hydrogen photoproduction in Chlamydomonas also use this heat-inducible system to activate target gene transcription and hydrogen synthesis. RESULTS: Here we describe a blue light-inducible system with which we achieved optogenetic regulation of target gene expression in C. reinhardtii. This light-inducible system was engineered in a photosynthetic organism for the first time. The photo-inducible heterodimerizing proteins CRY2 and CIB1 were fused to VP16 transcription activation domain and the GAL4 DNA-binding domain, respectively. This scheme allows for transcription activation of the target gene downstream of the activation sequence in response to blue light. Using this system, we successfully engineered blue light-inducible hydrogen-producing transgenic alga. The transgenic alga was cultured under red light and grew approximately normally until logarithmic phase. When illuminated with blue light, the transgenic alga expressed the artificial miRNA targeting photosynthetic system D1 protein, and altered hydrogen production was observed. CONCLUSIONS: The light-inducible system successfully activated the artificial miRNA and, consequently, regulation of its target gene under blue light. Moreover, hydrogen production was enhanced using this system, indicating a more convenient and efficient approach for gene expression regulation in large-scale microalgae cultivation. This optogenetic gene control system is a useful tool for gene regulation and also establishes a novel way to improve hydrogen production in green algae.
