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1.
Lung Cancer ; 112: 47-56, 2017 10.
Artículo en Inglés | MEDLINE | ID: mdl-29191600

RESUMEN

OBJECTIVES: Lung cancer is the leading cause of cancer related deaths worldwide and mutation activating KRAS is one of the most frequent mutations found in lung adenocarcinoma. Identifying regulators of KRAS may aid in the development of therapies to treat this disease. The mitogen-induced gene 6, MIG-6, is a small adaptor protein modulating signaling in cells to regulate the growth and differentiation in multiple tissues. Here, we investigated the role of Mig-6 in regulating adenocarcinoma progression in the lungs of genetically engineered mice with activation of Kras. MATERIALS AND METHODS: Using the CCSPCre mouse to specifically activate expression of the oncogenic KrasG12D in Club cells, we investigated the expression of Mig-6 in CCSPCreKrasG12D-induced lung tumors. To determine the role of Mig-6 in KrasG12D-induced lung tumorigenesis, Mig-6 was conditionally ablated in the Club cells by breeding Mig6f/f mice to CCSPCreKrasG12D mice, yielding CCSPCreMig-6d/dKrasG12D mice (Mig-6d/dKrasG12D). RESULTS: We found that Mig-6 expression is decreased in CCSPCreKrasG12D-induced lung tumors. Ablation of Mig-6 in the KrasG12D background led to enhanced tumorigenesis and reduced life expectancy. During tumor progression, there was increased airway hyperplasia, a heightened inflammatory response, reduced apoptosis in KrasG12D mouse lungs, and an increase of total and phosphorylated ERBB4 protein levels. Mechanistically, Mig-6 deficiency attenuates the cell apoptosis of lung tumor expressing KRASG12D partially through activating the ErbB4 pathway. CONCLUSIONS: In summary, Mig-6 deficiency promotes the development of KrasG12D-induced lung adenoma through reducing the cell apoptosis in KrasG12D mouse lungs partially by activating the ErbB4 pathway.


Asunto(s)
Transformación Celular Neoplásica/genética , Genes ras , Péptidos y Proteínas de Señalización Intracelular/deficiencia , Neoplasias Pulmonares/genética , Proteínas Adaptadoras Transductoras de Señales/deficiencia , Proteínas Adaptadoras Transductoras de Señales/genética , Animales , Apoptosis , Proliferación Celular , Modelos Animales de Enfermedad , Regulación de la Expresión Génica , Hiperplasia , Inmunohistoquímica , Inflamación , Estimación de Kaplan-Meier , Neoplasias Pulmonares/mortalidad , Neoplasias Pulmonares/patología , Ratones , Ratones Noqueados , Mutación , Fenotipo , Receptor ErbB-4/genética , Transducción de Señal , Proteínas Supresoras de Tumor/deficiencia , Proteínas Supresoras de Tumor/genética
2.
Cell Rep ; 10(9): 1599-1613, 2015 Mar 10.
Artículo en Inglés | MEDLINE | ID: mdl-25753424

RESUMEN

Lung cancer remains the leading cause of cancer death. Genome sequencing of lung tumors from patients with squamous cell carcinoma has identified SMAD4 to be frequently mutated. Here, we use a mouse model to determine the molecular mechanisms by which Smad4 loss leads to lung cancer progression. Mice with ablation of Pten and Smad4 in airway epithelium develop metastatic adenosquamous tumors. Comparative transcriptomic and in vivo cistromic analyses determine that loss of PTEN and SMAD4 results in ELF3 and ErbB2 pathway activation due to decreased expression of ERRFI1, a negative regulator of ERBB2 in mouse and human cells. The combinatorial inhibition of ErbB2 and Akt signaling attenuate tumor progression and cell invasion, respectively. Expression profile analysis of human lung tumors substantiated the importance of the ErbB2/Akt/ELF3 signaling pathway as both a prognostic biomarker and a therapeutic drug target for treating lung cancer.

3.
Am J Respir Cell Mol Biol ; 48(2): 188-97, 2013 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-23087054

RESUMEN

Environmentally persistent free radicals (EPFRs) in combustion-generated particulate matter (PM) are capable of inducing pulmonary pathologies and contributing to the development of environmental asthma. In vivo exposure of infant rats to EPFRs demonstrates their ability to induce airway hyperresponsiveness to methacholine, a hallmark of asthma. However, the mechanisms by which combustion-derived EPFRs elicit in vivo responses remain elusive. In this study, we used a chemically defined EPFR consisting of approximately 0.2 µm amorphrous silica containing 3% cupric oxide with the organic pollutant 1,2-dichlorobenzene (DCB-230). DCB-230 possesses similar radical content to urban-collected EPFRs but offers several advantages, including lack of contaminants and chemical uniformity. DCB-230 was readily taken up by BEAS-2B and at high doses (200 µg/cm(2)) caused substantial necrosis. At low doses (20 µg/cm(2)), DCB-230 particles caused lysosomal membrane permeabilization, oxidative stress, and lipid peroxidation within 24 hours of exposure. During this period, BEAS-2B underwent epithelial-to-mesenchymal transition (EMT), including loss of epithelial cell morphology, decreased E-cadherin expression, and increased α-smooth muscle actin (α-SMA) and collagen I production. Similar results were observed in neonatal air-liquid interface culture (i.e., disruption of epithelial integrity and EMT). Acute exposure of infant mice to DCB-230 resulted in EMT, as confirmed by lineage tracing studies and evidenced by coexpression of epithelial E-cadherin and mesenchymal α-SMA proteins in airway cells and increased SNAI1 expression in the lungs. EMT in neonatal mouse lungs after EPFR exposure may provide an explanation for epidemiological evidence supporting PM exposure and increased risk of asthma.


Asunto(s)
Contaminantes Atmosféricos/toxicidad , Transición Epitelial-Mesenquimal/efectos de los fármacos , Animales , Animales Recién Nacidos , Bronquiolos/citología , Bronquiolos/efectos de los fármacos , Línea Celular , Permeabilidad de la Membrana Celular , Relación Dosis-Respuesta a Droga , Células Epiteliales/efectos de los fármacos , Ratones , Estrés Oxidativo , Tamaño de la Partícula
4.
Cell Biol Int ; 36(9): 785-91, 2012 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-22571236

RESUMEN

Lung surfactant is crucial for reducing the surface tension of alveolar space, thus preventing the alveoli from collapse. Lung surfactant is synthesized in alveolar epithelial type II cells and stored in lamellar bodies before being released via the fusion of lamellar bodies with the apical plasma membrane. SNAREs (soluble N-ethylmaleimide-sensitive fusion protein-attachment protein receptors) play an essential role in membrane fusion. We have previously demonstrated the requirement of t-SNARE (target SNARE) proteins, syntaxin 2 and SNAP-23 (N-ethylmaleimide-sensitive factor-attachment protein 23), in regulated surfactant secretion. Here, we characterized the distribution of VAMPs (vesicle-associated membrane proteins) in rat lung and alveolar type II cells. VAMP-2, -3 and -8 are shown in type II cells at both mRNA and protein levels. VAMP-2 and -8 were enriched in LB (lamellar body) fraction. Immunochemistry studies indicated that VAMP-2 was co-localized with the LB marker protein, LB-180. Functionally, the cytoplasmic domain of VAMP-2, but not VAMP-8 inhibited surfactant secretion in type II cells. We suggest that VAMP-2 is the v-SNARE (vesicle SNARE) involved in regulated surfactant secretion.


Asunto(s)
Células Epiteliales/metabolismo , Proteínas Asociadas a Surfactante Pulmonar/metabolismo , Proteína 2 de Membrana Asociada a Vesículas/metabolismo , Animales , Células Cultivadas , Pulmón/metabolismo , Fusión de Membrana , Proteínas Asociadas a Surfactante Pulmonar/análisis , Proteínas R-SNARE/genética , Proteínas R-SNARE/metabolismo , ARN Mensajero/biosíntesis , Ratas , Ratas Sprague-Dawley , Proteínas SNARE/metabolismo , Proteína 2 de Membrana Asociada a Vesículas/genética
5.
PLoS One ; 5(11): e14171, 2010 Nov 30.
Artículo en Inglés | MEDLINE | ID: mdl-21152393

RESUMEN

Fluid accumulation is critical for lung distension and normal development. The multi-subunit γ-amino butyric acid type A receptors (GABAA) mainly act by mediating chloride ion (Cl-) fluxes. Since fetal lung actively secretes Cl--rich fluid, we investigated the role of GABAA receptors in fetal lung development. The physiological ligand, GABA, and its synthesizing enzyme, glutamic acid decarboxylase, were predominantly localized to saccular epithelium. To examine the effect of activating GABAA receptors in fetal lung development in vivo, timed-pregnant rats of day 18 gestation underwent an in utero surgery for the administration of GABAA receptor modulators into the fetuses. The fetal lungs were isolated on day 21 of gestation and analyzed for changes in fetal lung development. Fetuses injected with GABA had a significantly higher body weight and lung weight when compared to phosphate-buffered saline (control)-injected fetuses. GABA-injected fetal lungs had a higher number of saccules than the control. GABA increased the number of alveolar epithelial type II cells as indicated by surfactant protein C-positive cells. However, GABA decreased the number of α-smooth muscle actin-positive myofibroblasts, but did not affect the number of Clara cells or alveolar type I cells. GABA-mediated effects were blocked by the GABAA receptor antagonist, bicuculline. GABA also increased cell proliferation and Cl- efflux in fetal distal lung epithelial cells. In conclusion, our results indicate that GABAA receptors accelerate fetal lung development, likely through an enhanced cell proliferation and/or fluid secretion.


Asunto(s)
Pulmón/embriología , Organogénesis/fisiología , Receptores de GABA-A/fisiología , Actinas/metabolismo , Animales , Bicuculina/farmacología , Peso Corporal/efectos de los fármacos , Proliferación Celular/efectos de los fármacos , Cloruros/metabolismo , Femenino , GABAérgicos/farmacología , Antagonistas de Receptores de GABA-A/farmacología , Glutamato Descarboxilasa/metabolismo , Inmunohistoquímica , Transporte Iónico/efectos de los fármacos , Pulmón/citología , Pulmón/metabolismo , Masculino , Músculo Liso/química , Miofibroblastos/efectos de los fármacos , Miofibroblastos/metabolismo , Tamaño de los Órganos/efectos de los fármacos , Embarazo , Ratas , Ratas Sprague-Dawley , Receptores de GABA-A/metabolismo , Factores de Tiempo , Ácido gamma-Aminobutírico/metabolismo , Ácido gamma-Aminobutírico/farmacología
6.
Development ; 136(19): 3347-56, 2009 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-19710174

RESUMEN

Mitogen-inducible gene 6 [Mig-6; Errfi1 (ErbB receptor feedback inhibitor 1); RALT (receptor-associated late transducer); gene 33] is a ubiquitously expressed adaptor protein containing CRIB, SH3 and 14-3-3 interacting domains and has been shown to negatively regulate EGF signaling. Ablation of Mig-6 results in a partial lethal phenotype in which surviving mice acquire degenerative joint diseases and tumors in multiple organs. We have determined that the early lethality in Mig-6(-/-) mice occurs in the perinatal period, with mice displaying abnormal lung development. Histological examination of Mig-6(-/-) lungs (E15.5-P3) revealed reduced septation, airway over-branching, alveolar type II cell hyperplasia, and disturbed vascular formation. In neonatal Mig-6(-/-) lungs, cell proliferation increased in the airway epithelium but apoptosis increased in the blood vessels. Adult Mig-6(-/-) mice developed features of chronic obstructive pulmonary disease (COPD); however, when Mig-6 was inducibly ablated in adult mice (Mig-6(d/d)), the lungs were normal. Knockdown of MIG-6 in H441 human bronchiolar epithelial cells increased phospho-EGFR and phospho-AKT levels as well as cell proliferation, whereas knockdown of MIG-6 in human lung microvascular endothelial (HMVEC-L) cells promoted their apoptosis. These results demonstrate that Mig-6 is required for prenatal and perinatal lung development, in part through the regulation of EGF signaling, as well as for maintaining proper pulmonary vascularization.


Asunto(s)
Proteínas Adaptadoras Transductoras de Señales/fisiología , Pulmón/crecimiento & desarrollo , Pulmón/fisiología , Proteínas Adaptadoras Transductoras de Señales/antagonistas & inhibidores , Proteínas Adaptadoras Transductoras de Señales/deficiencia , Proteínas Adaptadoras Transductoras de Señales/genética , Animales , Animales Recién Nacidos , Apoptosis , Secuencia de Bases , Bronquiolos/citología , Bronquiolos/metabolismo , Proliferación Celular , Células Cultivadas , Cartilla de ADN/genética , Células Endoteliales/citología , Células Endoteliales/metabolismo , Receptores ErbB/metabolismo , Femenino , Regulación del Desarrollo de la Expresión Génica , Homeostasis , Humanos , Péptidos y Proteínas de Señalización Intracelular , Pulmón/irrigación sanguínea , Pulmón/embriología , Ratones , Ratones Noqueados , Neovascularización Fisiológica , Embarazo , Interferencia de ARN , Transducción de Señal , Proteínas Supresoras de Tumor
7.
Gene Expr Patterns ; 8(6): 397-403, 2008 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-18539546

RESUMEN

Cl(-) transport is essential for lung development. Because gamma-aminobutyric acid (GABA) receptors allow the flow of negatively-charged Cl(-) ions across the cell membrane, we hypothesized that the expression of ionotropic GABA receptors are regulated in the lungs during development. We identified 17 GABA receptor subunits in the lungs by real-time PCR. These subunits were categorized into four groups: Group 1 had high mRNA expression during fetal stages and low in adults; Group 2 had steady expression to adult stages with a slight up-regulation at birth; Group 3 showed an increasing expression from fetal to adult lungs; and Group 4 displayed irregular mRNA fluctuations. The protein levels of selected subunits were also determined by Western blots and some subunits had protein levels that corresponded to mRNA levels. Further studied subunits were primarily localized in epithelial cells in the developing lung with differential mRNA expression between isolated cells and whole lung tissues. Our results add to the knowledge of GABA receptor expression in the lung during development.


Asunto(s)
Pulmón/embriología , Pulmón/metabolismo , Receptores de GABA/metabolismo , Animales , Células Epiteliales/metabolismo , Femenino , Expresión Génica , Regulación del Desarrollo de la Expresión Génica , Pulmón/citología , Masculino , Subunidades de Proteína/genética , Subunidades de Proteína/metabolismo , ARN Mensajero/metabolismo , Ratas , Ratas Sprague-Dawley , Receptores de GABA/análisis , Receptores de GABA/genética
8.
BMC Genomics ; 9: 115, 2008 Mar 03.
Artículo en Inglés | MEDLINE | ID: mdl-18315880

RESUMEN

BACKGROUND: Arsenic is a carcinogen that is known to induce cell transformation and tumor formation. Although studies have been performed to examine the modulation of signaling molecules caused by arsenic exposure, the molecular mechanisms by which arsenic causes cancer are still unclear. We hypothesized that arsenic alters gene expression leading to carcinogenesis in the lung. RESULTS: In this study, we examined global gene expression in response to 0.75 microM arsenic treatment for 1-7 days in a rat lung epithelial cell line (L2) using an in-house 10 k rat DNA microarray. One hundred thirty one genes were identified using the one-class statistical analysis of microarray (SAM) test. Of them, 33 genes had a fold change of > or = 2 between at least two time points. These genes were then clustered into 5 groups using K-means cluster analysis based on their expression patterns. Seven selected genes, all associated with cancer, were confirmed by real-time PCR. These genes have functions directly or indirectly related to metabolism, glycolysis, cell proliferation and differentiation, and regulation of transcription. CONCLUSION: Our findings provide important insight for the future studies of arsenic-mediated lung cancer.


Asunto(s)
Arsénico/toxicidad , Carcinógenos/toxicidad , Transformación Celular Neoplásica , Expresión Génica/efectos de los fármacos , Pulmón/efectos de los fármacos , Animales , Diferenciación Celular , Supervivencia Celular , Transformación Celular Neoplásica/inducido químicamente , Transformación Celular Neoplásica/efectos de los fármacos , Células Cultivadas , Análisis por Conglomerados , Relación Dosis-Respuesta a Droga , Células Epiteliales/citología , Células Epiteliales/efectos de los fármacos , Células Epiteliales/metabolismo , Pulmón/citología , Pulmón/metabolismo , Neoplasias Pulmonares/metabolismo , Análisis de Secuencia por Matrices de Oligonucleótidos , Ratas
9.
Genesis ; 45(11): 716-21, 2007 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-17987665

RESUMEN

Mitogen-inducible gene 6 (Mig-6) is a stress-induced gene that serves as a negative regulator of epidermal growth factor (EGF) signaling and acts as a tumor suppressor. Ablation of Mig-6 results in a significant percentage of embryo lethality as well as abnormalities in multiple tissues. To understand the physiological roles of Mig-6, a conditional null allele, Mig-6(f/f) was generated by introducing LoxP sites that flank exons 2 and 4. The Mig-6(f/f) allele was validated by generating recombined Mig-6(-/-) mice using the Zp3-Cre system. The conditional null allele was confirmed by assaying for Mig-6 gene expression in liver, lung, uterus, and skin. The recombined Mig-6(-/-) mice developed pathological changes, such as degenerative joint diseases and skin hyperplasia similar to the previously reported Mig-6 germline null allele. In addition, these mice also had enlarged uteri with endometrial hyperplasia. In summary, this Mig-6(f/f) mouse is a useful tool for the functional study of the Mig-6 gene in a tissue-specific fashion.


Asunto(s)
Proteínas Adaptadoras Transductoras de Señales/genética , Proteínas Adaptadoras Transductoras de Señales/metabolismo , Alelos , Ingeniería Genética/métodos , Animales , Forma de la Célula , Péptidos y Proteínas de Señalización Intracelular , Ratones , Ratones Noqueados , Piel/citología , Piel/metabolismo
10.
Free Radic Biol Med ; 43(4): 628-42, 2007 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-17640573

RESUMEN

Alveolar epithelial cell (AEC) injury and repair during hyperoxia exposure and recovery have been investigated for decades, but the molecular mechanisms of these processes are not clear. To identify potentially important genes involved in lung injury and repair, we studied the gene expression profiles of isolated AEC II from control, 48-h hyperoxia-exposed (>95% O(2)), and 1-7 day recovering rats using a DNA microarray containing 10,000 genes. Fifty genes showed significant differential expression between two or more time points (P<0.05, fold change >2). These genes can be classified into 8 unique gene expression patterns. Real-time PCR verified 14 selected genes in three patterns related to hyperoxia exposure and early recovery. The change in the protein level for two of the selected genes, bmp-4 and retnla, paralleled that of the mRNA level. Many of these genes were found to be involved in cell proliferation and differentiation. In an in vitro AEC trans-differentiation culture model using AEC II isolated from control and 48-h hyperoxia-exposed rats, the expressions of the cell proliferation and differentiation genes identified above were consistent with their predicted roles in the trans-differentiation of AEC. These data indicate that a coordinated mechanism may control AEC differentiation during in vivo hyperoxia exposure and recovery as well as during in vitro AEC culture.


Asunto(s)
Células Epiteliales/fisiología , Expresión Génica/fisiología , Hiperoxia/genética , Alveolos Pulmonares/fisiología , Animales , Western Blotting , Diferenciación Celular , Proliferación Celular , Células Epiteliales/citología , Células Epiteliales/patología , Perfilación de la Expresión Génica , Hiperoxia/fisiopatología , Inmunohistoquímica , Masculino , Análisis de Secuencia por Matrices de Oligonucleótidos , Alveolos Pulmonares/citología , Alveolos Pulmonares/patología , Ratas , Ratas Sprague-Dawley , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
11.
J Biol Chem ; 281(47): 36012-20, 2006 Nov 24.
Artículo en Inglés | MEDLINE | ID: mdl-17003036

RESUMEN

Polarized distribution of chloride channels on the plasma membrane of epithelial cells is required for fluid transport across the epithelium of fluid-transporting organs. Ionotropic gamma-aminobutyric acid receptors are primary ligand-gated chloride channels that mediate inhibitory neurotransmission. Traditionally, these receptors are not considered to be contributors to fluid transport. Here, we report a novel function of gamma-aminobutyric acid receptors involving alveolar fluid homeostasis in adult lungs. We demonstrated the expression of functional ionotropic gamma-aminobutyric acid receptors on the apical plasma membrane of alveolar epithelial type II cells. gamma-Aminobutyric acid significantly increased chloride efflux in the isolated type II cells and inhibited apical to basolateral chloride transport on type II cell monolayers. Reduction of the gamma-aminobutyric acid receptor pi subunit using RNA interference abolished the gamma-aminobutyric acid-mediated chloride transport. In intact rat lungs, gamma-aminobutyric acid inhibited both basal and beta agonist-stimulated alveolar fluid clearance. Thus, we provide molecular and pharmacological evidence that ionotropic gamma-aminobutyric acid receptors contribute to fluid transport in the lung via luminal secretion of chloride. This finding may have the potential to develop clinical approaches for pulmonary diseases involving abnormal fluid dynamics.


Asunto(s)
Alveolos Pulmonares/metabolismo , Receptores de GABA/fisiología , Adenoviridae/genética , Animales , Biotinilación , Membrana Celular/metabolismo , Canales de Cloruro/química , Cloruros/química , Inmunoprecipitación , Ligandos , Pulmón/metabolismo , Interferencia de ARN , Ratas , Receptores de GABA/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Factores de Tiempo
12.
Am J Physiol Lung Cell Mol Physiol ; 291(5): L1027-37, 2006 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-16798779

RESUMEN

Fetal lung development is a complex biological process that involves temporal and spatial regulations of many genes. To understand the molecular mechanisms of this process, we investigated gene expression profiles of fetal lungs on gestational days 18, 19, 20, and 21, as well as newborn and adult rat lungs. For this analysis, we used an in-house rat DNA microarray containing 6,000 known genes and 4,000 expressed sequence tags (ESTs). Of these, 1,512 genes passed the statistical significance analysis of microarray (SAM) test; an at least twofold change was shown for 583 genes (402 known genes and 181 ESTs) between at least two time points. K-means cluster analysis revealed seven major expression patterns. In one of the clusters, gene expression increased from day 18 to day 20 and then decreased. In this cluster, which contained 10 known genes and 5 ESTs, 8 genes are associated with development. These genes can be integrated into regulatory pathways, including growth factors, plasma membrane receptors, adhesion molecules, intracellular signaling molecules, and transcription factors. Real-time PCR analysis of these 10 genes showed an 88% consistency with the microarray data. The mRNA of LIM homeodomain protein 3a (Lhx3), a transcription factor, was enriched in fetal type II cells. In contrast, pleiotrophin, a growth factor, had a much higher expression in fetal lung tissues than in fetal type II cells. Immunohistochemistry revealed that Lhx3 was localized in fetal lung epithelial cells and pleiotrophin in the mesenchymal cells adjacent to the developing epithelium and blood vessel. Using GenMAPP, we identified four regulatory pathways: transforming growth factor-beta signaling, inflammatory response, cell cycle, and G protein signaling. We also identified two metabolic pathways: glycolysis-gluconeogenesis and proteasome degradation. Our results may provide new insights into the complex regulatory pathways that control fetal lung development.


Asunto(s)
Perfilación de la Expresión Génica , Regulación del Desarrollo de la Expresión Génica , Pulmón/embriología , Pulmón/fisiología , Animales , Proteínas Portadoras/genética , Análisis por Conglomerados , Citocinas/genética , Proteínas de Homeodominio/genética , Proteínas con Homeodominio LIM , Análisis de Secuencia por Matrices de Oligonucleótidos , ARN Mensajero/genética , Ratas , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Transducción de Señal/genética , Factores de Transcripción
13.
BMC Genomics ; 7: 47, 2006 Mar 13.
Artículo en Inglés | MEDLINE | ID: mdl-16533406

RESUMEN

BACKGROUND: The comparison of organ transcriptomes is an important strategy for understanding gene functions. In the present study, we attempted to identify lung-prominent genes by comparing the normal transcriptomes of rat lung, heart, kidney, liver, spleen, and brain. To increase the efficiency and reproducibility, we first developed a novel parallel hybridization system, in which 6 samples could be hybridized onto a single slide at the same time. RESULTS: We identified the genes prominently expressed in the lung (147) or co-expressed in lung-heart (23), lung-liver (37), lung-spleen (203), and lung-kidney (98). The known functions of the lung-prominent genes mainly fell into 5 categories: ligand binding, signal transducer, cell communication, development, and metabolism. Real-time PCR confirmed 13 lung-prominent genes, including 5 genes that have not been investigated in the lung, vitamin D-dependent calcium binding protein (Calb3), mitogen activated protein kinase 13 (Mapk13), solute carrier family 29 transporters, member 1 (Slc29a1), corticotropin releasing hormone receptor (Crhr1), and lipocalin 2 (Lcn2). CONCLUSION: The lung-prominent genes identified in this study may provide an important clue for further investigation of pulmonary functions.


Asunto(s)
Perfilación de la Expresión Génica , Pulmón/metabolismo , Análisis de Secuencia por Matrices de Oligonucleótidos , Animales , ADN Complementario/genética , Masculino , ARN Mensajero/genética , ARN Mensajero/metabolismo , Ratas , Ratas Sprague-Dawley , Reproducibilidad de los Resultados , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
14.
Physiol Genomics ; 25(3): 525-7, 2006 May 16.
Artículo en Inglés | MEDLINE | ID: mdl-16507784

RESUMEN

Quantitative real-time PCR is an important high-throughput method in the biomedical sciences. However, existing software has limitations in handling both relative and absolute quantification. We designed quantitative PCR data analysis and management system (qPCR-DAMS), a database tool based on Access 2003, to deal with such shortcomings by the addition of integrated mathematical procedures. qPCR-DAMS allows a user to choose among four methods for data processing within a single software package: 1) ratio relative quantification, 2) absolute level, 3) normalized absolute expression, and 4) ratio absolute quantification. qPCR-DAMS also provides a tool for multiple reference gene normalization. qPCR-DAMS has three quality control steps and a data display system to monitor data variation. In summary, qPCR-DAMS is a handy tool for real-time PCR users.


Asunto(s)
Sistemas de Administración de Bases de Datos , Bases de Datos Genéticas , Reacción en Cadena de la Polimerasa , Perfilación de la Expresión Génica , Modelos Teóricos
15.
J Physiol ; 572(Pt 3): 625-38, 2006 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-16497717

RESUMEN

The lung alveolar surface is covered by two morphologically and functionally distinct cells: alveolar epithelial cell types I and II (AEC I and II). The functions of AEC II, including surfactant release, cell differentiation and ion transport, have been extensively studied. However, relatively little is known regarding the physiological functions of AEC I. Global gene expression profiling of freshly isolated AEC I and II revealed that many genes were differentially expressed in AEC I. These genes have a diversity of functions, including cell defence. Nine out of 10 selected genes were verified by quantitative real-time PCR. Two genes, apolipoprotein E (Apo E) and transferrin, were further characterized and functionally studied. Immunohistochemistry indicated that both proteins were specifically localized in AEC I. Up-regulation of Apo E and transferrin was observed in hyperoxic lungs. Functionally, Apo E and transferrin play a protective role against oxidative stress in an animal model. Our studies suggest that AEC I is not just a simple barrier for gas exchange, but a functional cell that protects alveolar epithelium from injury.


Asunto(s)
Apolipoproteínas E/metabolismo , Estrés Oxidativo/fisiología , Alveolos Pulmonares/citología , Alveolos Pulmonares/fisiología , Mucosa Respiratoria/citología , Mucosa Respiratoria/fisiología , Transferrina/metabolismo , Animales , Calcio/metabolismo , Células Cultivadas , Humanos , Masculino , Ratas , Ratas Sprague-Dawley
16.
Am J Respir Cell Mol Biol ; 34(6): 677-87, 2006 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-16439800

RESUMEN

Alveolar epithelial type II cells secrete lung surfactant via exocytosis. Soluble N-ethylmaleimide-sensitive factor attachment protein receptors (SNARE) are implicated in this process. Lipid rafts, the cholesterol- and sphingolipid-rich microdomains, may offer a platform for protein organization on the cell membrane. We tested the hypothesis that lipid rafts organize exocytotic proteins in type II cells and are essential for the fusion of lamellar bodies, the secretory granules of type II cells, with the plasma membrane. The lipid rafts, isolated from type II cells using 1% Triton X-100 and a sucrose gradient centrifugation, contained the lipid raft markers, flotillin-1 and -2, whereas they excluded the nonraft marker, Na+-K+ ATPase. SNAP-23, syntaxin 2, and VAMP-2 were enriched in lipid rafts. When type II cells were depleted of cholesterol, the association of SNAREs with the lipid rafts was disrupted and the formation of fusion pore was inhibited. Furthermore, the cholesterol-depleted plasma membrane had less ability to fuse with lamellar bodies, a process mediated by annexin A2. The secretagogue-stimulated secretion of lung surfactant from type II cells was also reduced by methyl-beta-cyclodextrin. When the raft-associated cell surface protein, CD44, was cross-linked using anti-CD44 antibodies, the CD44 clusters were observed. Syntaxin 2, SNAP-23, and annexin A2 co-localized with the CD44 clusters, which were cholesterol dependent. Our results suggested that lipid rafts may form a functional platform for surfactant secretion in alveolar type II cells, and raft integrity was essential for the fusion between lamellar bodies with the plasma membrane.


Asunto(s)
Colesterol/metabolismo , Exocitosis , Microdominios de Membrana/metabolismo , Alveolos Pulmonares/metabolismo , Proteínas SNARE/metabolismo , Animales , Anexina A2/metabolismo , Células Cultivadas , Colesterol/deficiencia , Receptores de Hialuranos/inmunología , Receptores de Hialuranos/metabolismo , Masculino , Fusión de Membrana , Microdominios de Membrana/química , Microdominios de Membrana/inmunología , Proteínas de la Membrana/genética , Proteínas de la Membrana/metabolismo , Surfactantes Pulmonares/metabolismo , Ratas , Ratas Sprague-Dawley , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Proteínas SNARE/análisis , Vesículas Secretoras/metabolismo , Factores de Tiempo , Proteínas de Transporte Vesicular/análisis , Proteínas de Transporte Vesicular/metabolismo , beta-Ciclodextrinas
17.
J Cell Biochem ; 97(5): 984-98, 2006 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-16288470

RESUMEN

Although several studies have shown that an induction of insulin-like growth factor (IGF) components occurs during hyperoxia-mediated lung injury, the role of these components in tissue repair is not well known. The present study aimed to elucidate the role of IGF system components in normal tissue remodeling. We used a rat model of lung injury and remodeling by exposing rats to > 95% oxygen for 48 h and allowing them to recover in room air for up to 7 days. The mRNA expression of IGF-I, IGF-II, and IGF-1 receptor (IGF-1R) increased during injury. However, the protein levels of these components remained elevated until day 3 of the recovery and were highly abundant in alveolar type II cells. Among IGF binding proteins (IGFBPs), IGFBP-5 mRNA expression increased during injury and at all the recovery time points. IGFBP-2 and -3 mRNA were also elevated during injury phase. In an in vitro model of cell differentiation, the expression of IGF-I and IGF-II increased during trans-differentiation of alveolar epithelial type II cells into type-I like cells. The addition of anti-IGF-1R and anti-IGF-I antibodies inhibited the cell proliferation and trans-differentiation to some extent, as evident by cell morphology and the expression of type I and type II cell markers. These findings demonstrate that the IGF signaling pathway plays a critical role in proliferation and differentiation of alveolar epithelium during tissue remodeling.


Asunto(s)
Expresión Génica , Hiperoxia/inducido químicamente , Factor I del Crecimiento Similar a la Insulina/metabolismo , Enfermedades Pulmonares/inducido químicamente , Pulmón/metabolismo , Alveolos Pulmonares/patología , Ratas , Animales , Diferenciación Celular , Proliferación Celular , Modelos Animales de Enfermedad , Células Epiteliales/patología , Inmunohistoquímica , Factor II del Crecimiento Similar a la Insulina/metabolismo , Pulmón/patología , Enfermedades Pulmonares/terapia , Masculino , Reacción en Cadena de la Polimerasa , Alveolos Pulmonares/citología , ARN Mensajero/metabolismo , Ratas Sprague-Dawley , Receptor IGF Tipo 1/metabolismo , Factores de Tiempo
19.
Cell Tissue Res ; 321(2): 173-83, 2005 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-15912403

RESUMEN

Although type A gamma-aminobutyric acid (GABA) receptors (ligand-gated Cl(-) channels) have been extensively studied in the central nervous system, no information is available on this receptor in lung cells. We have examined the expression of GABA(A) receptor pi-subunit (GABRP) during the trans-differentiation between rat alveolar epithelial type II cells and type I cells. Rat alveolar type II cells, when cultured on plastic plates, gradually trans-differentiated into type-I-like cells and lost their GABRP mRNA expression. However, the GABRP mRNA was partially retained in the type II cells cultured on Matrigel. Keratinocyte growth factor (a mitogen of type II cells) increased GABRP expression. A detached collagen gel maintained the GABRP mRNA to a level close to that of the freshly isolated type II cells. An air-liquid interface culture system, mimicking in vivo conditions in the lung, significantly up-regulated the expression of GABRP mRNA and protein. mRNAs of the GABA(A) receptor alpha1-, alpha3-, beta2-, gamma2-, and gamma3-subunits were also detected in rat type II cells. These results suggest that GABRP expression is differentially regulated by culture substrata, growth factor, detached gel, and an air-apical surface.


Asunto(s)
Células Epiteliales/metabolismo , Pulmón/metabolismo , Subunidades de Proteína/metabolismo , Alveolos Pulmonares/metabolismo , Receptores de GABA-A/metabolismo , Animales , Técnicas de Cultivo de Célula/normas , Diferenciación Celular/fisiología , Membrana Celular/metabolismo , Células Cultivadas , Células Epiteliales/citología , Regulación de la Expresión Génica/fisiología , Pulmón/citología , Masculino , Subunidades de Proteína/genética , Alveolos Pulmonares/citología , ARN Mensajero/metabolismo , Ratas , Ratas Sprague-Dawley , Receptores de GABA-A/genética , Respiración/genética , Regulación hacia Arriba/efectos de los fármacos , Regulación hacia Arriba/fisiología , Ácido gamma-Aminobutírico/metabolismo
20.
Nucleic Acids Res ; 32(17): e134, 2004 Sep 27.
Artículo en Inglés | MEDLINE | ID: mdl-15452203

RESUMEN

RNA interference (RNAi) is a sequence-specific post-transcriptional gene silencing process. Although it is widely used in the loss-of-function studies, none of the current RNAi technologies can achieve cell-specific gene silencing. The lack of cell specificity limits its usage in vivo. Here, we report a cell-specific RNAi system using an alveolar epithelial type II cell-specific promoter--the surfactant protein C (SP-C) promoter. We show that the SP-C-driven small hairpin RNAs specifically depress the expression of the exogenous reporter (enhanced green fluorescent protein) and endogenous genes (lamin A/C and annexin A2) in alveolar type II cells, but not other lung cells, using cell and organ culture in vitro as well as in vivo. The present study provides an efficient strategy in silencing a gene in one type of cell without interfering with other cell systems, and may have a significant impact on RNAi therapy.


Asunto(s)
Regiones Promotoras Genéticas , Alveolos Pulmonares/metabolismo , Proteína C Asociada a Surfactante Pulmonar/genética , Interferencia de ARN , Adenoviridae/genética , Animales , Anexina A2/biosíntesis , Anexina A2/genética , Células Cultivadas , Vectores Genéticos , Laminas/biosíntesis , Laminas/genética , Pulmón/citología , Pulmón/metabolismo , Masculino , Técnicas de Cultivo de Órganos , Alveolos Pulmonares/citología , Ratas , Ratas Sprague-Dawley
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