Indirect pulsed electrochemical detection following high-performance reversed-phase liquid chromatography.

For detection using pulsed electrochemical detection (PED), analytes must preadsorb to the working gold electrode. Indirect pulsed electrochemical detection (InPED) exploits this requirement by including a PED-active reagent in the mobile phase. The background signal provided by oxidation of this reagent is attenuated by the adsorption of analyte molecules to the electrode. In this paper, a method has been developed to allow the use of InPED in combination with high-performance reversed-phase liquid chromatography (RPLC). Biotin was used as a probe molecule to determine that the use of acetonitrile as the organic modifier in the mobile phase provided superior results to the use of methanol. In addition, a silica-based, high surface area C18 column (i.e., Varian Pursuit XRs) was found to give better results than a polymer-based reversed-phase column (i.e., Dionex IonPac NS1). Optimized experimental conditions were used todetermine lipoic acid, tiopronin, and penicillamine, obtaining detection limits of ≤1 µM (30 pmol injected). The analytical utility of RPLC-InPED was demonstrated by an assay of an over-the-counter-formulation containing lipoic acid.

Indirect pulsed electrochemical detection of aliphatic carboxylate-containing analytes following high performance anion-exchange chromatography.

The mechanism of detection in pulsed electrochemical detection (PED) requires preadsorption of the analyte to the working electrode prior to its subsequent oxidation. Indirect detection is accomplished by the addition of a PED-active reagent to the mobile phase, whose signal is attenuated by an analyte that more strongly adsorbs to the electrode surface. Here, indirect PED (InPED) is applied to the determination of aliphatic carboxylate-containing compounds separated using high performance anion-exchange chromatography (HPAEC). Limits of detections of 0.05-2 ppm (10-400 pmol) are found for most analytes tested using an optimized potential-time waveform at a gold working electrode. The analytical utility of InPED is demonstrated for assays of gabapentin, biotin, proline and several over-the-counter formulations.

Indirect pulsed electrochemical detection of amino acids and proteins following high performance liquid chromatography.

Pulsed electrochemical detection (PED) following liquid chromatographic separation has been applied to the indirect determination of amino acids and proteins. Here, the adsorption of these analytes at noble metal electrodes is exploited to suppress the oxidation of polyols and carbohydrates under alkaline conditions to elicit an indirect response. Of the reagents tested, gluconic acid gave the best overall signal-to-noise values for the indirect detection of amino acids following high performance anion-exchange chromatography (HPAEC). Limits of detection of amino acids were found to be 2-30pmol using optimized potential-time waveforms at an Au electrode. Indirect PED provided much greater detection sensitivity toward amino acids than direct PED. Analytical sensitivity of indirect PED is a function of both the analyte's ability to adsorb to the electrode surface and its molecular size, which was demonstrated by the separation and detection of bovine serum albumin, ovalbumin, and myoglobin following gel-filtration chromatography (GFC).

End-stacking of copper cationic porphyrins on parallel-stranded guanine quadruplexes.

Nucleic acids that contain multiple sequential guanines assemble into guanine quadruplexes (G-quadruplexes). Drugs that induce or stabilize G-quadruplexes are of interest because of their potential use as therapeutics. Previously, we reported on the interaction of the Cu(2+) derivative of 5,10,15,20-tetrakis(1-methyl-4-pyridyl)-21H,23H-porphine (CuTMpyP4), with the parallel-stranded G-quadruplexes formed by d(T(4)G( n )T(4)) (n = 4 or 8) (Keating and Szalai in Biochemistry 43:15891-15900, 2004). Here we present further characterization of this system using a series of guanine-rich oligonucleotides: d(T(4)G( n )T(4)) (n = 5-10). Absorption titrations of CuTMpyP4 with all d(T(4)G( n )G(4)) quadruplexes produce approximately the same bathochromicity (8.3 +/- 2 nm) and hypochromicity (46.2-48.6%) of the porphyrin Soret band. Induced emission spectra of CuTMpyP4 with d(T(4)G( n )T(4))(4) quadruplexes indicate that the porphyrin is protected from solvent. Electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry revealed a maximum porphyrin to quadruplex stoichiometry of 2:1 for the shortest (n = 4) and longest (n = 10) quadruplexes. Electron paramagnetic resonance spectroscopy shows that bound CuTMpyP4 occupies magnetically noninteracting sites on the quadruplexes. Consistent with our previous model for d(T(4)G(4)T(4)), we propose that two CuTMpyP4 molecules are externally stacked at each end of the run of guanines in all d(T(4)G( n )T(4)) (n = 4-10) quadruplexes.

Parallel-stranded guanine quadruplex interactions with a copper cationic porphyrin.

G-quadruplexes are formed by association of DNA strands containing multiple contiguous guanines. The capability of drugs to induce formation of or stabilize G-quadruplexes is an active area of investigation. We report the interactions of CuTMpyP4, the Cu(2+) derivative of 5,10,15,20-tetrakis(1-methyl-4-pyridyl)-21H,23H-porphine, with the parallel-stranded G-quadruplexes formed by d(T(4)G(4)T(4)) (1) and d(T(4)G(8)T(4)) (3). Absorption titrations of CuTMpyP4 with (1)(4) or (3)(4) cause both bathochromicity and hypochromicity of the porphyrin Soret band, with larger changes observed for the longer oligonucleotide. An approximate binding constant for (1)(4) and CuTMpyP4 according to the Scatchard model is 5.6 x 10(6) M(-)(1) in terms of quadruplexes and according to the McGhee-von Hippel model is 1.3 x 10(6) M(-)(1) in terms of potential binding sites. An approximate binding constant for (3)(4) and CuTMpyP4 according to the Scatchard model is 5.2 x 10(7) M(-)(1) in terms of quadruplexes and in terms of the McGhee-von Hippel model is 2.4 x 10(6) M(-)(1) in terms of potential binding sites. The site size for CuTMpyP4 and (1)(4) is four using the McGhee-von Hippel model. We find a 2:1 binding stoichiometry for CuTMpyP4 and (1)(4) and a 3:1 binding stoichiometry for CuTMpyP4 and (3)(4) using the method of continuous variation analysis. Induced emission spectra of CuTMpyP4 with (1)(4) or (3)(4) indicate a mode of binding in which the ligand is protected from the solvent. Electron paramagnetic resonance spectra of CuTMpyP4 with added oligonucleotide show an increase in the Cu-N superhyperfine coupling constant as the length of the oligonucleotide increases. On the basis of these data, we propose that for both (1)(4) and (3)(4), CuTMpyP4 molecules externally stack at each end of the run of guanines, similar to other planar G-quadruplex ligands. For (3)(4), our data are consistent with intercalation of a CuTMpyP4 molecule into the G-quadruplex.