Modulations of ocean-atmosphere interactions on squid abundance over Southwest Atlantic.

Anthropogenic shifts in seas are reshaping fishing trends, with significant implications for aquatic food sources throughout this century. Examining a 21-year abundance dataset of Argentine shortfin squids Illex argentinus paired with a regional oceanic analysis, we noted strong correlations between squid annual abundance and sea surface temperature (SST) in January and February and eddy kinetic energy (EKE) from March to May in the Southwest Atlantic. A deeper analysis revealed combined ocean-atmosphere interactions, pinpointed as the primary mode in a rotated empirical orthogonal function analysis of SST. This pattern produced colder SST and amplified EKE in the surrounding seas, factors crucial for the unique life stages of squids. Future projections from the CMIP6 archive indicated that this ocean-atmosphere pattern, referred to as the Atlantic symmetric pattern, would persist in its cold SST phase, promoting increased squid abundance. However, rising SSTs due to global warming might counteract the abundance gains. Our findings uncover a previously unrecognized link between squids and specific environmental conditions governed by broader ocean-atmosphere interactions in the Southwest Atlantic. Integrating these insights with seasonal and decadal projections can offer invaluable information to stakeholders in squid fisheries and marine conservation under a changing climate.

Effects of Tropical Cyclone Passage on Plankton Community Respiration in a Phosphate-Limited Freshwater Ecosystem.

Plankton community respiration (CR) in aquatic ecosystems varies with environmental factors, which could be altered during tropical cyclones (TCs). A potential increase in CR resulting from the effects of TCs is generally understudied. Here, we examined the relationship between plankton CR and environmental factors, including during TC-affected periods, in a phosphate-limited freshwater ecosystem. We conducted an intensive in situ sampling in Fei-Tsui Reservoir (FTR) from January 2010 to December 2015 during TC periods and non-TC periods. Our results showed a consistent temporal pattern that plankton CR increased between March to October and declined between November to February. These changes in plankton CR, primarily supported by bacterial biomass, were positively influenced by euphotic depth-averaged temperature. The CR also significantly increased with euphotic depth-averaged NO2-concentrations and decreased with euphotic depth-averaged NO3-concentrations. These results indicated that these factors typically influenced CR dynamics in the FTR. During TC periods, plankton CR was increased further due to a higher and ideal euphotic depth-averaged temperature (23-27°C) and increased supply of limiting nutrient resources via stream runoff. Overall, this study showed that a TC positively influences plankton CR by creating favorable water conditions. Notably, with a higher frequency of intense TCs projected for the Western North Pacific in most climate change scenarios, the impact of TCs on CR may increase in the near future.

Viral shunt in tropical oligotrophic ocean.

Viruses cause massive bacterial mortality and thus modulate bacteria-governed carbon transfer and nutrient recycling at global scale. The viral shunt hypothesis states the crucial role of viral lysis in retaining microbial carbon into food web processes, while its applicability to nature has not been well identified for over two decades. Here, we conducted nine diel surveys in the tropical South China Sea and suggested that the time scale adopted in sampling and system trophic status determine the "visibility" of the viral shunt in the field. Specifically, viral abundance (VA), bacterial biomass (BB), and bacterial specific growth rate (SGR) varied synchronously and presented the significant VA-BB and VA-SGR linkages at an hourly scale, which reveals direct interactions between viruses and their hosts. The differential responses of the viral shunt to temperature, i.e., looser VA-SGR coupling in warm and tighter VA-SGR coupling in cold environments, imply an altered carbon cycling in tropical oceans under climatic warming.

Large-scale data analysis for robotic yeast one-hybrid platforms and multi-disciplinary studies using GateMultiplex.

BACKGROUND: Yeast one-hybrid (Y1H) is a common technique for identifying DNA-protein interactions, and robotic platforms have been developed for high-throughput analyses to unravel the gene regulatory networks in many organisms. Use of these high-throughput techniques has led to the generation of increasingly large datasets, and several software packages have been developed to analyze such data. We previously established the currently most efficient Y1H system, meiosis-directed Y1H; however, the available software tools were not designed for processing the additional parameters suggested by meiosis-directed Y1H to avoid false positives and required programming skills for operation. RESULTS: We developed a new tool named GateMultiplex with high computing performance using C++. GateMultiplex incorporated a graphical user interface (GUI), which allows the operation without any programming skills. Flexible parameter options were designed for multiple experimental purposes to enable the application of GateMultiplex even beyond Y1H platforms. We further demonstrated the data analysis from other three fields using GateMultiplex, the identification of lead compounds in preclinical cancer drug discovery, the crop line selection in precision agriculture, and the ocean pollution detection from deep-sea fishery. CONCLUSIONS: The user-friendly GUI, fast C++ computing speed, flexible parameter setting, and applicability of GateMultiplex facilitate the feasibility of large-scale data analysis in life science fields.

Extreme Weather Events Enhance DOC Consumption in a Subtropical Freshwater Ecosystem: A Multiple-Typhoon Analysis.

Empirical evidence suggests that the frequency/intensity of extreme weather events might increase in a warming climate. It remains unclear how these events quantitatively impact dissolved organic carbon (DOC), a pool approximately equal to CO2 in the atmosphere. This study conducted a weekly-to-biweekly sampling in a deep subtropical reservoir in the typhoon-prevailing season (June to September) from 2004 to 2009, at which 33 typhoons with distinctive precipitation (<1~362 mm d-1) had passed the study site. Our analyses indicated that the phosphate (i.e., DIP; <10~181 nMP) varied positively with the intensity of the accumulated rainfall 2-weeks prior; bacteria growth rate (0.05~3.68 d-1) behaved as a positive function of DIP, and DOC concentrations (54~119 µMC) changed negatively with bacterial production (1.2~26.1 mgC m-3 d-1). These implied that the elevated DIP-loading in the hyperpycnal flow induced by typhoons could fuel bacteria growth and cause a significant decline of DOC concentrations. As the typhoon's intensity increases, many mineral-limited lentic freshwater ecosystems might become more like a CO2 source injecting more CO2 back to the atmosphere, creating a positive feedback loop that might generate severer extreme weather events.

Identification of Phosphorus Sources in a Watershed Using a Phosphate Oxygen Isoscape Approach.

Identifying nonpoint phosphorus (P) sources in a watershed is essential for addressing cultural eutrophication and for proposing best-management solutions. The oxygen isotope ratio of phosphate (δ18OPO4) can shed light on P sources and P cycling in ecosystems. This is the first assessment of the δ18OPO4 distribution in a whole catchment, namely, the Yasu River Watershed in Japan. The observed δ18OPO4 values in the river water varied spatially from 10.3‰ to 17.6‰. To identify P sources in the watershed, we used an isoscape approach involving a multiple-linear-regression model based on land use and lithological types. We constructed two isoscape models, one using data only from the whole watershed and the other using data from the small tributaries. The model results explain 69% and 96% of the spatial variation in the river water δ18OPO4. The lower R2 value for the whole watershed model is attributed to the relatively large travel time for P in the main stream of the lower catchment that can result in cumulative biological P recycling. Isoscape maps and a correlation analysis reveal the relative importance of P loading from paddy fields and bedrock. This work demonstrates the utility of δ18OPO4 isoscape models for assessing nonpoint P sources in watershed ecosystems.

Decadal phytoplankton dynamics in response to episodic climatic disturbances in a subtropical deep freshwater ecosystem.

Information of the decadal timescale effects of episodic climatic disturbances (i.e., typhoons) on phytoplankton in freshwater ecosystems have received less attention and fewer seasonal evaluations partly due to the lack of long-term time-series monitoring data in typhoon prevailing areas. Through field observations of a total 36 typhoon cases in a subtropical deep freshwater ecosystem in the period of 2005-2014, we quantified phytoplankton biomass, production and growth rate in response to meteorological and hydrological changes in the weeks before, during and after typhoons between summer and autumn, and also investigated the effects of typhoon characteristics on the aforementioned phytoplankton responses. The results showed that phytoplankton exposed to typhoon disturbances generally exhibited an increasing trend over the weeks before, during and after typhoons in summer but varied in autumn. The correlations and multivariate regressions showed different contributions of meteorological and hydrological variables to individual phytoplankton responses before, during and after typhoons between seasons. The post-typhoon weeks (i.e., within two weeks after a typhoon had passed) were especially important for the timeline of phytoplankton increases and with a detectable seasonal variation that the chlorophyll a concentration significantly increased in autumn whereas both primary production and growth rate were associated with significant changes in summer. Additionally, phytoplankton responses during the post-typhoon weeks were significantly different between discrete or continuous types of typhoon events. Our work illustrated the fact that typhoons did influence phytoplankton responses in the subtropical deep freshwater ecosystem and typhoon passages in summer and autumn affected the phytoplankton dynamics differently. Nevertheless, sustained and systematic monitoring in order to advance our understanding of the role of typhoons between seasons in the modulation of phytoplankton productivity and functioning is required because such episodic climatic disturbances are projected to have intense magnitude and inconsistent frequency under 21st century climate change.

Nutrient pulses driven by internal solitary waves enhance heterotrophic bacterial growth in the South China Sea.

This study demonstrated the potential effects of internal waves (IWs) on heterotrophic bacterial activities for the first time. Nine anchored studies were conducted from 2009-2012 in the South China Sea areas with different physical conditions, i.e. areas subjected to elevation IWs, to depression IWs, and to weak/no IWs. The latter two areas were treated as the Control sites. Field survey results indicated that within the euphotic zone, the minima of the depth-averaged bacterial production (IBP; ∼1.0 mgC m-3 d-1 ) and growth rate (IBµ; ∼0.1 d-1 ) at all sites were similar. Except for one case, the maxima of IBP (6-12 mgC m-3 d-1 ) and IBµ (0.55-1.13 d-1 ) of the elevation IWs areas were ∼fivefolds higher than those of the Control sites (IBP 1.7-2.1 mgC m-3 d-1 ; IBµ 0.13-0.24 d-1 ). Replicate surveys conducted at the north-western area of the Dongsha atoll during spring-to-neap (NW1 survey) and neap-to-spring (NW2 survey) tide periods showed a great contrast to each other. Low variation and averages of IBµ in NW1 survey were similar to those of the Control sites, while those in NW2 were similar to the other elevation IWs sites with larger variation and higher averages of IBµ. This finding suggests that bacterial activities may be a function of the lunar fortnightly (14-day) cycle. Enrichment experiments suggested more directly that the limiting inorganic nutrients introduced by the elevation waves (EIWs) may contribute a higher IBµ within the euphotic zone.

Dietary guild composition and disaggregation of avian assemblages under climate change.

Climate change is expected to cause geographic redistributions of species. To the extent that species within assemblages have different niche requirements, assemblages may no longer remain intact and dis- and reassemble at current or new geographic locations. We explored how climate change projected by 2100 may transform the world's avian assemblages (characterized at a 110 km spatial grain) by modeling environmental niche-based changes to their dietary guild structure under 0, 500, and 2000 km-dispersal distances. We examined guild structure changes at coarse (primary, high-level, and mixed consumers) and fine (frugivores, nectarivores, insectivores, herbivores, granivores, scavengers, omnivores, and carnivores) ecological resolutions to determine whether or not geographic co-occurrence patterns among guilds were associated with the magnitude to which guilds are functionally resolved. Dietary guilds vary considerably in their global geographic prevalence, and under broad-scale niche-based redistribution of species, these are projected to change very heterogeneously. A nondispersal assumption results in the smallest projected changes to guild assemblages, but with significant losses for some regions and guilds, such as South American insectivores. Longer dispersal distances are projected to cause greater degrees of disassembly, and lead to greater homogenization of guild composition, especially in northern Asia and Africa. This arises because projected range gains and losses result in geographically heterogeneous patterns of guild compensation. Projected decreases especially of primary and mixed consumers most often are compensated by increases in high-level consumers, with increasing uncertainty about these outcomes as dispersal distance and degree of guild functional resolution increase. Further exploration into the consequences of these significant broad-scale ecological functional changes at the community or ecosystem level should be increasingly on the agenda for conservation science.

Spatial analysis of scrub typhus infection and its association with environmental and socioeconomic factors in Taiwan.

We analyzed the spatial distribution of human cases of scrub typhus on the main island of Taiwan from 2003 to 2008 and implemented an island-wide survey of scrub typhus vectors (trombiculid chiggers) in 2007 and 2008. The standardized incidence rate 'SIR' incorporating inter-district variations in population, gender and age was correlated with environmental and socioeconomic variables. Higher incidence and SIR rates were clustered in the less developed, mountainous regions of central and eastern Taiwan. Higher SIRs were also associated with a higher proportion of dry-field farmers in the population, a higher normalized difference vegetation index (NDVI) and lower mean annual temperature, but was not associated with rainfall. Small mammal hosts in high-SIR districts harbored more chiggers and had higher rates of seropositivity against Orientia tsutsugamushi Hyashi, the etiologic agent of scrub typhus, compared to low-SIR districts. The concurrence of a higher proportion of dry-field farmers and higher NDVI has likely led to the clustering of scrub typhus in the mountainous regions of Taiwan. Further individual-level study of the risk factors associated with scrub typhus, and a better understanding of the effect of environmental factors on chigger abundance, should help to prevent scrub typhus in Taiwan.