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1.
Nanoscale Adv ; 6(9): 2487-2498, 2024 Apr 30.
Artículo en Inglés | MEDLINE | ID: mdl-38694467

RESUMEN

Comb copolymer analogues of poly(lactic acid)-polyethylene glycol block copolymers (PLA-b-PEG) offer potential to overcome the inherent chemistry and stability limitations of their linear block copolymer counterparts. Herein, we examine the differences between P(L)LA10K-b-PEG10K and linear-comb copolymer analogues thereof in which the linear PEG block is replaced by poly(oligo(ethylene glycol) methacrylate) (POEGMA) blocks with different side chain (comb) lengths but the same overall molecular weight. P(L)LA10K-b-POEGMA47510K and P(L)LA10K-b-POEGMA200010K block copolymers were synthesized via activators regenerated by electron transfer atom transfer radical polymerization (ARGET ATRP) and fabricated into self-assembled nanoparticles using flash nanoprecipitation via confined impinging jet mixing. Linear-comb copolymer analogues based on PLA-b-POEGMA yielded smaller but still well-controlled nanoparticle sizes (88 ± 2 nm and 114 ± 1 nm respectively compared to 159 ± 2 nm for P(L)LA10K-b-PEG10K nanoparticles) that exhibited improved colloidal stability relative to linear copolymer-based nanoparticles over a 15 day incubation period while maintaining comparably high cytocompatibility, although the comb copolymer analogues had somewhat lower loading capacity for doxorubicin hydrochloride. Cell spheroid studies showed that the linear-comb copolymers promoted enhanced tumor transport and thus cell killing compared to conventional linear block copolymers. In vivo studies showed all NP types could passively accumulate within implanted CT26 tumors but with different accumulation profiles, with P(L)LA10K-b-POEGMA200010K NPs showing continuous accumulation throughout the full 24 h monitoring period whereas tumor accumulation of P(L)LA10K-b-POEGMA47510K NPs was significant only between 8 h and 24 h. Overall, the linear-comb copolymer analogues exhibited superior stability, biodistribution, spheroid penetration, and inherent tunability over linear NP counterparts.

2.
BMC Genomics ; 25(1): 424, 2024 Apr 29.
Artículo en Inglés | MEDLINE | ID: mdl-38684959

RESUMEN

Salinity impacts crop growth and productivity and lowers the activities of rhizosphere microbiota. The identification and utilization of habitat-specific salinity-adapted plant growth-promoting rhizobacteria (PGPR) are considered alternative strategies to improve the growth and yields of crops in salinity-affected coastal agricultural fields. In this study, we characterize strain L1I39T, the first Aquabacter species with PGPR traits isolated from a salt-tolerant pokkali rice cultivated in brackish environments. L1I39T is positive for 1-aminocyclopropane-1-carboxylate deaminase activity and nitrogen fixation and can promote pokkali rice growth by supplying fixed nitrogen under a nitrogen-deficient seawater condition. Importantly, enhanced plant growth and efficient root colonization were evident in L1I39T-inoculated plants grown under 20% seawater but not in zero-seawater conditions, identifying brackish conditions as a key local environmental factor critical for L1I39T-pokkali rice symbiosis. Detailed physiological studies revealed that L1I39T is well-adapted to brackish environments. In-depth genome analysis of L1I39T identified multiple gene systems contributing to its plant-associated lifestyle and brackish adaptations. The 16S rRNA-based metagenomic study identified L1I39T as an important rare PGPR taxon. Based on the polyphasic taxonomy analysis, we established strain L1I39T as a novel Aquabacter species and proposed Aquabacter pokkalii sp nov. Overall, this study provides a better understanding of a marine-adapted PGPR strain L1I39T that may perform a substantial role in host growth and health in nitrogen-poor brackish environments.


Asunto(s)
Fijación del Nitrógeno , Oryza , Filogenia , Raíces de Plantas , Oryza/microbiología , Oryza/genética , Oryza/crecimiento & desarrollo , Raíces de Plantas/microbiología , Raíces de Plantas/crecimiento & desarrollo , Rizosfera , Salinidad , Adaptación Fisiológica/genética , Simbiosis , ARN Ribosómico 16S/genética
3.
Aust N Z J Psychiatry ; 58(4): 320-333, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-37941354

RESUMEN

OBJECTIVE: To determine antipsychotic utilisation patterns in Australian adults from 2005 to 2021, with a focus on on-label and off-label prescriptions. METHODS: We examined antipsychotic dispensing trends in adults from 2005 to 2021 using a 10% sample of the Pharmaceutical Benefits Scheme (PBS) dataset, which contains patient-level information on medicines dispensed throughout Australia. The lack of diagnostic information in PBS was substituted by analysing BEACH (Bettering the Evaluation And Care of Health) dataset, a cross-sectional national survey from 2000 to 2016, consisting of data from general practitioner-patient encounters. RESULTS: There were 5.6 million dispensings for 164,993 patients in PBS throughout this period; 69% patients had >1 dispensing, with a median of 6 per patient. Calculating the estimated period of exposure gave a total of 693,562 treatment episodes, with a median duration of 80 days. There were steady increases in both the incidence and prevalence of antipsychotic dispensings, mainly due to oral second-generation antipsychotics. The most commonly prescribed antipsychotics were quetiapine, olanzapine and risperidone, with a significant portion of patients receiving low-dose quetiapine without dose titration. Analysis of diagnostic indications from BEACH indicated that 27% of antipsychotic prescriptions were off-label for indications such as depression, dementia, anxiety and insomnia, at much lower prescribed daily dosages. CONCLUSION: The increasing prescribing and off-label use highlights concerns about chronic adverse effects caused by antipsychotics. The combined analysis of medication dispensings and the diagnostic indications for which they are prescribed is a novel approach and throws a spotlight on the need for additional monitoring of antipsychotics.


Asunto(s)
Antipsicóticos , Adulto , Humanos , Antipsicóticos/uso terapéutico , Fumarato de Quetiapina , Uso Fuera de lo Indicado , Estudios Retrospectivos , Estudios Transversales , Australia/epidemiología
4.
Clin Cancer Res ; 29(20): 4289-4305, 2023 Oct 13.
Artículo en Inglés | MEDLINE | ID: mdl-37561398

RESUMEN

PURPOSE: T-cell exhaustion limits immunotherapy for the treatment of solid tumors. Although immune checkpoint blockade and adoptive T-cell therapy (ACT) can mediate tumor regression, their potency is often determined by tumor burden. Here, we identified tumor burden-related pathway changes that are conducive to T-cell exhaustion. We then determined whether microenvironmental reprogramming via epigenetic modulation could reverse T-cell exhaustion and improve immunotherapeutic responsiveness. EXPERIMENTAL DESIGN: We developed a murine syngeneic tumor model wherein an increased burden ablated therapeutic responsiveness to ACT, which corresponded with systemic induction of T-cell exhaustion. Transcriptome analysis of these large tumors allowed us to characterize changes to immunosuppressive pathway expression during class I histone deacetylase inhibitor MS-275 treatment. We then measured the therapeutic impact of MS-275 during ACT and assessed T-cell exhaustion by transcriptome/phenotypic analysis. RESULTS: ACT durably regressed small tumors but failed to control large tumors, which were associated with systemic T-cell exhaustion and ablation of T-cell responses. Large tumors were defined by an immunosuppressive pathway signature. MS-275 reversed this pathway signature and promoted durable regression of large tumors during ACT. Prototypical exhaustion marker Tim-3 was selectively upregulated in transferred T cells despite displaying a reduced exhaustion signature. Instead, we observed enhanced activation-dependent signaling correlating with enrichment of the IL2-STAT5 signaling axis. Activated CD8+ T-cell responses were predominantly skewed toward terminal effector cell-like CD44+ Tim-3hi TCF1- CD127- KLRG1+ differentiation. CONCLUSIONS: Tumor burden-induced pathway changes can be reversed through epigenetic reprogramming, enabling the conversion from T-cell exhaustion to effector lineage differentiation.

5.
Mol Ther ; 30(12): 3619-3631, 2022 12 07.
Artículo en Inglés | MEDLINE | ID: mdl-35965414

RESUMEN

CRISPR technology has demonstrated broad utility for controlling target gene expression; however, there remains a need for strategies capable of modulating expression via the precise editing of non-coding regulatory elements. Here, we demonstrate that CRISPR base editors, a class of gene-modifying proteins capable of creating single-base substitutions in DNA, can be used to perturb gene expression via their targeted mutagenesis of cis-acting sequences. Using the promoter region of the human huntingtin (HTT) gene as an initial target, we show that editing of the binding site for the transcription factor NF-κB led to a marked reduction in HTT gene expression in base-edited cell populations. We found that these gene perturbations were persistent and specific, as a transcriptome-wide RNA analysis revealed minimal off-target effects resulting from the action of the base editor protein. We further demonstrate that this base-editing platform could influence gene expression in vivo as its delivery to a mouse model of Huntington's disease led to a potent decrease in HTT mRNA in striatal neurons. Finally, to illustrate the applicability of this concept, we target the amyloid precursor protein, showing that multiplex editing of its promoter region significantly perturbed its expression. These findings demonstrate the potential for base editors to regulate target gene expression.


Asunto(s)
Repeticiones Palindrómicas Cortas Agrupadas y Regularmente Espaciadas , Edición Génica , Humanos , Animales , Ratones
6.
Sci Adv ; 8(3): eabk2485, 2022 01 21.
Artículo en Inglés | MEDLINE | ID: mdl-35044815

RESUMEN

Cas13 nucleases are a class of programmable RNA-targeting CRISPR effector proteins that are capable of silencing target gene expression in mammalian cells. Here, we demonstrate that RfxCas13d, a Cas13 ortholog with favorable characteristics to other family members, can be delivered to the mouse spinal cord and brain to silence neurodegeneration-associated genes. Intrathecally delivering an adeno-associated virus vector encoding an RfxCas13d variant programmed to target superoxide dismutase 1 (SOD1), a protein whose mutation can cause amyotrophic lateral sclerosis, reduced SOD1 mRNA and protein in the spinal cord by >50% and improved outcomes in a mouse model of the disorder. We further show that intrastriatally delivering an RfxCas13d variant programmed to target huntingtin (HTT), a protein whose mutation is causative for Huntington's disease, led to a ~50% reduction in HTT protein in the mouse brain. Our results establish RfxCas13d as a versatile platform for knocking down gene expression in the nervous system.


Asunto(s)
Esclerosis Amiotrófica Lateral , Sistemas CRISPR-Cas , Esclerosis Amiotrófica Lateral/genética , Animales , Silenciador del Gen , Mamíferos , Ratones , Médula Espinal , Superóxido Dismutasa , Superóxido Dismutasa-1/genética
7.
Curr Pain Headache Rep ; 25(5): 34, 2021 Mar 24.
Artículo en Inglés | MEDLINE | ID: mdl-33760993

RESUMEN

PURPOSE OF REVIEW: Prevalence of chronic low back pain (cLBP) is increasing. Sacroiliac joint (SIJ) is a common source of cLBP, but data behind its diagnosis and treatment is controversial. There is moderate quality evidence for effectiveness of therapeutic SIJ injections. However, there are no studies comparing the two most common steroid preparations, methylprednisolone (MTP) and triamcinolone (TAC) in SIJ injections. RECENT FINDINGS: After institutional IRB approval, a retrospective chart review was conducted to evaluate the effectiveness of SIJ injections in terms of pain relief at 1-month follow-up and compare MTP versus TAC. All injections were performed by a single pain physician with fluoroscopic guidance. RESULTS: Sixty-five percent of patients in the MTP group and 57% patients in the TAC group had >50% pain relief at 1-month follow-up, with no statistical difference between the two groups. Patients in the TAC group had significantly greater BMI and consisted of higher proportion of smokers (72% patients in TAC group versus 39% patients in the MTP group, p-value 0.004). Other sources of pain such as facet joints were unmasked post-procedurally after SIJ injections, with this unmasking being significant for the TAC group. Opiate use decreased in the MTP group from 35% pre-procedurally to 20% post-procedurally, and this difference did not reach statistical significance. Both MTP and TAC are effective in providing pain relief for SIJ pain at 1-month follow-up, with no statistical difference between the two types of steroids. Although not statistically significant, there is a modest reduction in opiate use in the MTP group.


Asunto(s)
Dolor Crónico/tratamiento farmacológico , Glucocorticoides/uso terapéutico , Dolor de la Región Lumbar/tratamiento farmacológico , Metilprednisolona/uso terapéutico , Articulación Sacroiliaca , Triamcinolona/uso terapéutico , Adulto , Anciano , Femenino , Humanos , Inyecciones Intraarticulares , Masculino , Persona de Mediana Edad , Estudios Retrospectivos
8.
Mol Ther Oncolytics ; 14: 179-187, 2019 Sep 27.
Artículo en Inglés | MEDLINE | ID: mdl-31276026

RESUMEN

Irreproducibility of preclinical findings could be a significant barrier to the "bench-to-bedside" development of oncolytic viruses (OVs). A contributing factor is the incomplete and non-transparent reporting of study methodology and design. Using the NIH Principles and Guidelines for Reporting Preclinical Research, a core set of seven recommendations, we evaluated the completeness of reporting of preclinical OV studies. We also developed an evidence map identifying the current trends in OV research. A systematic search of MEDLINE and Embase identified all relevant articles published over an 18 month period. We screened 1,554 articles, and 236 met our a priori-defined inclusion criteria. Adenovirus (43%) was the most commonly used viral platform. Frequently investigated cancers included colorectal (14%), skin (12%), and breast (11%). Xenograft implantation (61%) in mice (96%) was the most common animal model. The use of preclinical reporting guidelines was listed in 0.4% of articles. Biological and technical replicates were completely reported in 1% of studies, statistics in 49%, randomization in 1%, blinding in 2%, sample size estimation in 0%, and inclusion/exclusion criteria in 0%. Overall, completeness of reporting in the preclinical OV therapy literature is poor. This may hinder efforts to interpret, replicate, and ultimately translate promising preclinical OV findings.

9.
J Med Imaging Radiat Oncol ; 63(2): 225-227, 2019 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-30467976

RESUMEN

We describe a rare case of middle lobe lung torsion in a patient with a tension hydrothorax secondary to multicentric Castleman disease. The case demonstrates the difficulty of diagnosing torsion prospectively, and the possible sequelae of delayed detection. Although imaging features can be confusing, an awareness of this condition and careful image interpretation by radiologists could facilitate early recognition and management of a torted lobe.


Asunto(s)
Enfermedad de Castleman/complicaciones , Enfermedades Pulmonares/diagnóstico por imagen , Neumotórax/diagnóstico por imagen , Anomalía Torsional/diagnóstico por imagen , Adulto , Medios de Contraste , Diagnóstico Diferencial , Femenino , Humanos , Enfermedades Pulmonares/cirugía , Neumotórax/cirugía , Radiografía Torácica , Tomografía Computarizada por Rayos X , Anomalía Torsional/cirugía , Ultrasonografía
10.
Appl Clin Inform ; 9(3): 714-724, 2018 07.
Artículo en Inglés | MEDLINE | ID: mdl-30208496

RESUMEN

BACKGROUND: Outpatient providers often do not receive discharge summaries from acute care providers prior to follow-up visits. These outpatient providers may use the after-visit summaries (AVS) that are given to patients to obtain clinical information. It is unclear how effectively AVS support care coordination between clinicians. OBJECTIVES: Goals for this effort include: (1) developing usability heuristics that may be applied both for assessment and to guide generation of medical documents in general, (2) conducting a heuristic evaluation to assess the use of AVS for communication between clinicians, and (3) providing recommendations for generating AVS that effectively support both patient/caregiver use and care coordination. METHODS: We created a 17-item heuristic evaluation instrument for assessing usability of medical documents. Eight experts used the instrument to assess each of four simulated AVS. The simulations were created using examples from two hospitals and two pediatric patient cases developed by the National Institute of Standards and Technology. RESULTS: Experts identified 224 unique usability problems ranging in severity from mild to catastrophic. Content issues (e.g., missing medical history, marital status of a 2-year-old) were rated as most severe, but widespread formatting and structural problems (e.g., inconsistent indentation, fonts, and headings; confusing ordering of information) were so distracting that they significantly reduced readers' ability to efficiently use the documents. Overall, issues in the AVS from Hospital 2 were more severe than those in the AVS from Hospital 1. CONCLUSION: The new instrument allowed for quick, inexpensive evaluations of AVS. Usability issues such as unnecessary information, poor organization, missing information, and inconsistent formatting make it hard for patients, caregivers, and clinicians to use the AVS. The heuristics in the new instrument may be used as guidance to adapt electronic health record systems so that they generate more useful and usable medical documents.


Asunto(s)
Continuidad de la Atención al Paciente , Registros Electrónicos de Salud , Heurística , Atención Ambulatoria , Documentación , Humanos , Pacientes Ambulatorios
11.
Syst Appl Microbiol ; 41(6): 570-580, 2018 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-30139512

RESUMEN

Three novel strains namely, L1E11T, L1E4 and 228 were isolated as part of an ongoing study on 1-aminocyclopropane-1-carboxylate (ACC) deaminase expressing rhizobacteria from crops cultivated in saline affected coastal agro-ecosystems of Kerala, India. The novel strains were positive for many properties that are beneficial to plant growth including ACC deaminase (ACCd) activity that ranged from 1.87±0.27 to 2.88±0.71µmol of α-ketobutyrate/hr/mg of total protein. Presence of other traits such as biofilm formation, siderophore production, phosphate solubilisation, utilisation of root derived compounds and ability to colonise host roots indicates its plant-associated life style. In complement, the genomic data reveals gene features for higher adaptation to plant-associated environments. In-planta assays showed that L1E11T can promote and protect pokkali rice plants from 200mM NaCl stress. Phylogenetic, chemotaxonomic, phenotypic and genomic characterisation indicates that the novel strains belong to a novel genus and species of the order Oceanospirillales for which the names Pokkaliibacter gen. nov., and Pokkaliibacter plantistimulans sp. nov., are proposed with L1E11T (=DSM 28732T=MCC 2992T) as the type strain. Further, on the basis of low 16S rRNA sequence similarity, phylogenetic divergence, source of isolation and few differences in the phenotypic properties against its nearest taxon, a new family Balneatrichaceae fam. nov., is proposed to accommodate the two genera Balneatrix and Pokkaliibacter gen.nov. with Balneatrix as the type genus. An emended description of the genus Balneatrix is also presented.


Asunto(s)
Aminoácido Oxidorreductasas/metabolismo , Productos Agrícolas/microbiología , Oceanospirillaceae/clasificación , Filogenia , Técnicas de Tipificación Bacteriana , ADN Bacteriano/genética , Ácidos Grasos/química , India , Oceanospirillaceae/enzimología , Oceanospirillaceae/genética , Oceanospirillaceae/aislamiento & purificación , Oryza/microbiología , Fosfolípidos/química , ARN Ribosómico 16S/genética , Rizosfera , Salinidad , Análisis de Secuencia de ADN
12.
Sci Transl Med ; 10(425)2018 01 24.
Artículo en Inglés | MEDLINE | ID: mdl-29367345

RESUMEN

Resistance to oncolytic virotherapy is frequently associated with failure of tumor cells to get infected by the virus. Dimethyl fumarate (DMF), a common treatment for psoriasis and multiple sclerosis, also has anticancer properties. We show that DMF and various fumaric and maleic acid esters (FMAEs) enhance viral infection of cancer cell lines as well as human tumor biopsies with several oncolytic viruses (OVs), improving therapeutic outcomes in resistant syngeneic and xenograft tumor models. This results in durable responses, even in models otherwise refractory to OV and drug monotherapies. The ability of DMF to enhance viral spread results from its ability to inhibit type I interferon (IFN) production and response, which is associated with its blockade of nuclear translocation of the transcription factor nuclear factor κB (NF-κB). This study demonstrates that unconventional application of U.S. Food and Drug Administration-approved drugs and biological agents can result in improved anticancer therapeutic outcomes.


Asunto(s)
Dimetilfumarato/farmacología , FN-kappa B/metabolismo , Viroterapia Oncolítica , Virus Oncolíticos/fisiología , Animales , Línea Celular Tumoral , Citocinas/biosíntesis , Ésteres/farmacología , Fumaratos/farmacología , Glutatión/metabolismo , Humanos , Interferón Tipo I/farmacología , Maleatos/farmacología , Ratones Endogámicos BALB C , Ratones Endogámicos C57BL , Virus Oncolíticos/efectos de los fármacos , Ensayos Antitumor por Modelo de Xenoinjerto
13.
Mol Ther ; 26(1): 56-69, 2018 01 03.
Artículo en Inglés | MEDLINE | ID: mdl-29175158

RESUMEN

Oncolytic viruses (OV) are an emerging class of anticancer bio-therapeutics that induce antitumor immunity through selective replication in tumor cells. However, the efficacy of OVs as single agents remains limited. We introduce a strategy that boosts the therapeutic efficacy of OVs by combining their activity with immuno-modulating, small molecule protein tyrosine phosphatase inhibitors. We report that vanadium-based phosphatase inhibitors enhance OV infection in vitro and ex vivo, in resistant tumor cell lines. Furthermore, vanadium compounds increase antitumor efficacy in combination with OV in several syngeneic tumor models, leading to systemic and durable responses, even in models otherwise refractory to OV and drug alone. Mechanistically, this involves subverting the antiviral type I IFN response toward a death-inducing and pro-inflammatory type II IFN response, leading to improved OV spread, increased bystander killing of cancer cells, and enhanced antitumor immune stimulation. Overall, we showcase a new ability of vanadium compounds to simultaneously maximize viral oncolysis and systemic anticancer immunity, offering new avenues for the development of improved immunotherapy strategies.


Asunto(s)
Vectores Genéticos/genética , Viroterapia Oncolítica , Virus Oncolíticos/genética , Compuestos de Vanadio/farmacología , Animales , Biomarcadores , Quimiocina CXCL9/metabolismo , Terapia Combinada , Citocinas/metabolismo , Modelos Animales de Enfermedad , Femenino , Terapia Genética/métodos , Humanos , Inmunoterapia , Mediadores de Inflamación/metabolismo , Interferón Tipo I/metabolismo , Interferón gamma/metabolismo , Activación de Linfocitos/inmunología , Ratones , Mortalidad , Especies Reactivas de Oxígeno/metabolismo , Linfocitos T/inmunología , Linfocitos T/metabolismo , Ensayos Antitumor por Modelo de Xenoinjerto
14.
Res Microbiol ; 168(2): 113-121, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-27639667

RESUMEN

Pokkali rice varieties are known for their saline tolerance when specifically grown in coastal saline affected agri-fields of southern Kerala. These fields are prone to seawater intrusion. During characterization of phytobeneficial rhizobacteria from this pokkali rice, L3E4T was isolated. This strain showed some plant growth-promoting functions (production of indole acetic acid (IAA), acetoin, and siderophore), biofilm formation and capacity to use a wide range of plant-derived organic compounds. In planta assay under axenic conditions showed a positive effect of L3E4T on pokkali rice growth; importantly, it was able to attach and colonize pokkali rice roots in the presence of natural seawater, a key adaptation required for survival in pokkali rice fields. Phylogenetic analysis using 16S rRNA, recA, and gyrB gene sequences showed that strain L3E4T belongs to the genus Novosphingobium, with Novosphingobium capsulatum GIFU 11526T and Novosphingobium rhizosphaerae JM.1T being the nearest phylogenetic relatives. In addition, DNA-DNA hybridization analysis and phenotypic traits established that this strain belongs to a novel Novosphingobium species, for which we propose the name Novosphingobium pokkalii sp. nov. The type strain is represented by strain L3E4T (=MTCC 12357T = KCTC 42224T).


Asunto(s)
Productos Agrícolas/microbiología , Oryza/microbiología , Rizosfera , Sphingomonadaceae/genética , Sphingomonadaceae/aislamiento & purificación , Acetoína/metabolismo , Cultivo Axénico , Técnicas de Tipificación Bacteriana , Biopelículas , Girasa de ADN/genética , ADN Bacteriano/genética , Ácidos Grasos/metabolismo , Ácidos Indolacéticos/metabolismo , Hibridación de Ácido Nucleico , Fosfolípidos/metabolismo , Filogenia , ARN Ribosómico 16S , Rec A Recombinasas/genética , Plantas Tolerantes a la Sal/microbiología , Agua de Mar/microbiología , Análisis de Secuencia de ADN , Sideróforos/biosíntesis , Sphingomonadaceae/metabolismo
15.
Sci Rep ; 6: 26786, 2016 05 26.
Artículo en Inglés | MEDLINE | ID: mdl-27226390

RESUMEN

The use of engineered viral strains such as gene therapy vectors and oncolytic viruses (OV) to selectively destroy cancer cells is poised to make a major impact in the clinic and revolutionize cancer therapy. In particular, several studies have shown that OV therapy is safe and well tolerated in humans and can infect a broad range of cancers. Yet in clinical studies OV therapy has highly variable response rates. The heterogeneous nature of tumors is widely accepted to be a major obstacle for OV therapeutics and highlights a need for strategies to improve viral replication efficacy. Here, we describe the development of a new class of small molecules for selectively enhancing OV replication in cancer tissue. Medicinal chemistry studies led to the identification of compounds that enhance multiple OVs and gene therapy vectors. Lead compounds increase OV growth up to 2000-fold in vitro and demonstrate remarkable selectivity for cancer cells over normal tissue ex vivo and in vivo. These small molecules also demonstrate enhanced stability with reduced electrophilicity and are highly tolerated in animals. This pharmacoviral approach expands the scope of OVs to include resistant tumors, further potentiating this transformative therapy. It is easily foreseeable that this approach can be applied to therapeutically enhance other attenuated viral vectors.


Asunto(s)
Furanos/farmacología , Herpesvirus Humano 1/efectos de los fármacos , Viroterapia Oncolítica/métodos , Virus Oncolíticos/efectos de los fármacos , Virus de la Estomatitis Vesicular Indiana/efectos de los fármacos , Replicación Viral/efectos de los fármacos , Adenocarcinoma/terapia , Animales , Línea Celular Tumoral , Neoplasias del Colon/terapia , Evaluación Preclínica de Medicamentos , Estabilidad de Medicamentos , Femenino , Glutatión/análisis , Herpesvirus Humano 1/genética , Herpesvirus Humano 1/fisiología , Proteínas Inmediatas-Precoces/deficiencia , Proteínas Inmediatas-Precoces/genética , Ratones , Ratones Endogámicos BALB C , Virus Oncolíticos/genética , Virus Oncolíticos/fisiología , Suero , Estimulación Química , Relación Estructura-Actividad , Ubiquitina-Proteína Ligasas/deficiencia , Ubiquitina-Proteína Ligasas/genética , Virus de la Estomatitis Vesicular Indiana/genética , Virus de la Estomatitis Vesicular Indiana/fisiología , Proteínas de la Matriz Viral/deficiencia , Proteínas de la Matriz Viral/genética
16.
PLoS One ; 11(3): e0150322, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-26963092

RESUMEN

A novel yellow colony-forming bacterium, strain P3B162T was isolated from the pokkali rice rhizosphere from Kerala, India, as part of a project study aimed at isolating plant growth beneficial rhizobacteria from saline tolerant pokkali rice and functionally evaluate their abilities to promote plant growth under saline conditions. The novel strain P3B162T possesses plant growth beneficial traits such as positive growth on 1-aminocyclopropane-1-carboxylic acid (ACC), production of indole acetic acid (IAA) and siderophore. In addition, it also showed important phenotypic characters such as ability to form biofilm and utilization of various components of plant root exudates (sugars, amino acids and organic acids), clearly indicating its lifestyle as a plant rhizosphere associated bacterium. Taxonomically, the novel strain P3B162T was affiliated to the genus Arthrobacter based on the collective results of phenotypic, genotypic and chemotaxonomic analyses. Moreover, molecular analysis using 16S rRNA gene showed Arthrobacter globiformis NBRC 12137T, Arthrobacter pascens DSM 20545T and Arthrobacter liuii DSXY973T as the closely related phylogenetic neighbours, showing more than 98% 16S rRNA similarity values, whereas the recA gene analysis displayed Arthrobacter liuii JCM 19864T as the nearest neighbour with 94.7% sequence similarity and only 91.7% to Arthrobacter globiformis LMG 3813T and 88.7% to Arthrobacter pascens LMG 16255T. However, the DNA-DNA hybridization values between strain P3B162T, Arthrobacter globiformis LMG 3813T, Arthrobacter pascens LMG 16255T and Arthrobacter liuii JCM 19864T was below 50%. In addition, the novel strain P3B162T can be distinguished from its closely related type strains by several phenotypic characters such as colony pigment, tolerance to NaCl, motility, reduction of nitrate, hydrolysis of DNA, acid from sucrose, cell wall sugars and cell wall peptidoglycan structure. In conclusion, the combined results of this study support the classification of strain P3B162T as a novel Arthrobacter species and we propose Arthrobacter pokkalii sp.nov.as its name. The type strain is P3B162T (= KCTC 29498T = MTCC 12358T).


Asunto(s)
Arthrobacter , Oryza/microbiología , ARN Bacteriano/genética , ARN Ribosómico 16S/genética , Rizosfera , Microbiología del Suelo , Arthrobacter/clasificación , Arthrobacter/genética , Arthrobacter/aislamiento & purificación , India
17.
Nat Methods ; 12(11): 1077-84, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26414013

RESUMEN

We report Single Molecule Cluster Analysis (SiMCAn), which utilizes hierarchical clustering of hidden Markov modeling-fitted single-molecule fluorescence resonance energy transfer (smFRET) trajectories to dissect the complex conformational dynamics of biomolecular machines. We used this method to study the conformational dynamics of a precursor mRNA during the splicing cycle as carried out by the spliceosome. By clustering common dynamic behaviors derived from selectively blocked splicing reactions, SiMCAn was able to identify the signature conformations and dynamic behaviors of multiple ATP-dependent intermediates. In addition, it identified an open conformation adopted late in splicing by a 3' splice-site mutant, invoking a mechanism for substrate proofreading. SiMCAn enables rapid interpretation of complex single-molecule behaviors and should prove useful for the comprehensive analysis of a plethora of dynamic cellular machines.


Asunto(s)
Análisis por Conglomerados , Precursores del ARN/química , Empalme del ARN , Adenosina Trifosfato/química , Dominio Catalítico , Simulación por Computador , Transferencia Resonante de Energía de Fluorescencia , Colorantes Fluorescentes/química , Humanos , Intrones , Cadenas de Markov , Mutación , Conformación de Ácido Nucleico , Sitios de Empalme de ARN , ARN Mensajero/química , Empalmosomas/química
18.
Nat Commun ; 6: 6410, 2015 Mar 30.
Artículo en Inglés | MEDLINE | ID: mdl-25817275

RESUMEN

In this study, we show that several microtubule-destabilizing agents used for decades for treatment of cancer and other diseases also sensitize cancer cells to oncolytic rhabdoviruses and improve therapeutic outcomes in resistant murine cancer models. Drug-induced microtubule destabilization leads to superior viral spread in cancer cells by disrupting type I IFN mRNA translation, leading to decreased IFN protein expression and secretion. Furthermore, microtubule-destabilizing agents specifically promote cancer cell death following stimulation by a subset of infection-induced cytokines, thereby increasing viral bystander effects. This study reveals a previously unappreciated role for microtubule structures in the regulation of the innate cellular antiviral response and demonstrates that unexpected combinations of approved chemotherapeutics and biological agents can lead to improved therapeutic outcomes.


Asunto(s)
Efecto Espectador/efectos de los fármacos , Citocinas/efectos de los fármacos , Interferón Tipo I/efectos de los fármacos , Microtúbulos/efectos de los fármacos , Viroterapia Oncolítica , Virus Oncolíticos , ARN Mensajero/efectos de los fármacos , Infecciones por Rhabdoviridae/inmunología , Moduladores de Tubulina/farmacología , Albendazol/farmacología , Animales , Bencimidazoles/farmacología , Efecto Espectador/inmunología , Línea Celular , Línea Celular Tumoral , Chlorocebus aethiops , Colchicina/farmacología , Citocinas/inmunología , Células HT29 , Humanos , Interferón Tipo I/genética , Interferón Tipo I/metabolismo , Ratones , Nocodazol/farmacología , Biosíntesis de Proteínas/efectos de los fármacos , ARN Mensajero/metabolismo , Rhabdoviridae , Células Vero , Vinblastina/análogos & derivados , Vinblastina/farmacología , Vinorelbina
19.
Asian Cardiovasc Thorac Ann ; 23(2): 219-20, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24585290

RESUMEN

The diagnosis of melioidosis can be difficult, and it is frequently described as "the great mimicker". We report a case of thoracic melioidosis presenting as a mediastinal mass with impending superior vena cava obstruction. With the presumptive diagnosis of mediastinal tumor, the patient underwent surgery for tissue sampling, and a purulent collection was found. The clinical syndromes of melioidosis and the diagnostic dilemma are discussed.


Asunto(s)
Absceso/diagnóstico , Burkholderia pseudomallei/aislamiento & purificación , Neoplasias del Mediastino/diagnóstico , Melioidosis/diagnóstico , Síndrome de la Vena Cava Superior/diagnóstico , Absceso/microbiología , Absceso/terapia , Antibacterianos/uso terapéutico , Biopsia , Terapia Combinada , Diagnóstico Diferencial , Drenaje , Femenino , Humanos , Melioidosis/microbiología , Melioidosis/terapia , Persona de Mediana Edad , Valor Predictivo de las Pruebas , Factores de Riesgo , Síndrome de la Vena Cava Superior/microbiología , Síndrome de la Vena Cava Superior/terapia , Cirugía Torácica Asistida por Video , Toracotomía , Tomografía Computarizada por Rayos X , Resultado del Tratamiento
20.
J Vis Exp ; (91): 51890, 2014 Sep 19.
Artículo en Inglés | MEDLINE | ID: mdl-25285536

RESUMEN

Standard plaque assays to determine infectious viral titers can be time consuming, are not amenable to a high volume of samples, and cannot be done with viruses that do not form plaques. As an alternative to plaque assays, we have developed a high-throughput titration method that allows for the simultaneous titration of a high volume of samples in a single day. This approach involves infection of the samples with a Firefly luciferase tagged virus, transfer of the infected samples onto an appropriate permissive cell line, subsequent addition of luciferin, reading of plates in order to obtain luminescence readings, and finally the conversion from luminescence to viral titers. The assessment of cytotoxicity using a metabolic viability dye can be easily incorporated in the workflow in parallel and provide valuable information in the context of a drug screen. This technique provides a reliable, high-throughput method to determine viral titers as an alternative to a standard plaque assay.


Asunto(s)
Ensayos Analíticos de Alto Rendimiento/métodos , Luciferasas de Luciérnaga/análisis , Vesiculovirus/enzimología , Cultivo de Virus/métodos , Animales , Chlorocebus aethiops , Luciferasas de Luciérnaga/biosíntesis , Luciferasas de Luciérnaga/genética , Transgenes , Células Vero , Vesiculovirus/genética
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