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1.
Front Microbiol ; 13: 923038, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35756030

RESUMEN

Parageobacillus thermantarcticus strain M1 is a Gram-positive, motile, facultative anaerobic, spore forming, and thermophilic bacterium, isolated from geothermal soil of the crater of Mount Melbourne (74°22' S, 164°40' E) during the Italian Antarctic Expedition occurred in Austral summer 1986-1987. Strain M1 demonstrated great biotechnological and industrial potential owing to its ability to produce exopolysaccharides (EPSs), ethanol and thermostable extracellular enzymes, such as an xylanase and a ß-xylosidase, and intracellular ones, such as xylose/glucose isomerase and protease. Furthermore, recent studies revealed its high potential in green chemistry due to its use in residual biomass transformation/valorization and as an appropriate model for microbial astrobiology studies. In the present study, using a systems-based approach, genomic analysis of P. thermantarcticus M1 was carried out to enlighten its functional characteristics. The elucidation of whole-genome organization of this thermophilic cell factory increased our understanding of biological mechanisms and pathways, by providing valuable information on the essential genes related to the biosynthesis of nucleotide sugar precursors, monosaccharide unit assembly, as well as the production of EPSs and ethanol. In addition, gene prediction and genome annotation studies identified genes encoding xylanolytic enzymes that are required for the conversion of lignocellulosic materials to high-value added molecules. Our findings pointed out the significant potential of strain M1 in various biotechnological and industrial applications considering its capacity to produce EPSs, ethanol and thermostable enzymes via the utilization of lignocellulosic waste materials.

2.
Biotechnol Biofuels ; 12: 22, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-30740143

RESUMEN

BACKGROUND: Due to its wide range of applications in the food, pharmaceutical and chemical fields, microbial synthesis of succinic acid is receiving growing attention, generating already relevant industrial results, as well as fueling constant research for improvements. In order to develop a sustainable process, a special focus is now set on the exploitation and conversion of lignocellulosic biomasses into platform chemicals. RESULTS: In the present work we used Basfia succiniciproducens BPP7 in separated hydrolysis and fermentation experiments with Arundo donax as starting material. Fed-batch strategies showed a maximal production of about 37 g/L of succinic acid after 43 h of growth and a productivity of 0.9 g/L h on the pilot scale. Global mass balance calculations demonstrated a hydrolysis and fermentation efficiency of about 75%. Moreover, the application of a material flow analysis showed the obtainment of 88.5 and 52 % of succinic acid, per kg of virgin biomass and on the total generated output, respectively. CONCLUSIONS: The use of fed-batch strategies for the growth of B. succiniciproducens on A. donax improved the titer and productivity of succinic acid on pre-pilot scale. Process evaluation through material flow analysis showed successful results and predicted a yield of succinic acid of about 30% in a fed-batch process that uses A. donax as only carbon source also in the feed. Preliminary considerations on the possibility to achieve an energetic valorization of the residual solid coming from the fermentation process were also carried out.

3.
Microorganisms ; 5(2)2017 May 16.
Artículo en Inglés | MEDLINE | ID: mdl-28509857

RESUMEN

Extreme marine environments have been the subject of many studies and scientific publications. For many years, these environmental niches, which are characterized by high or low temperatures, high-pressure, low pH, high salt concentrations and also two or more extreme parameters in combination, have been thought to be incompatible to any life forms. Thanks to new technologies such as metagenomics, it is now possible to detect life in most extreme environments. Starting from the discovery of deep sea hydrothermal vents up to the study of marine biodiversity, new microorganisms have been identified, and their potential uses in several applied fields have been outlined. Thermophile, halophile, alkalophile, psychrophile, piezophile and polyextremophile microorganisms have been isolated from these marine environments; they proliferate thanks to adaptation strategies involving diverse cellular metabolic mechanisms. Therefore, a vast number of new biomolecules such as enzymes, polymers and osmolytes from the inhabitant microbial community of the sea have been studied, and there is a growing interest in the potential returns of several industrial production processes concerning the pharmaceutical, medical, environmental and food fields.

4.
Bioresour Technol ; 222: 355-360, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-27741473

RESUMEN

In the present work the recently isolated strain Basfia succiniciproducens BPP7 was evaluated for the production of succinic acid up to the pilot fermentation scale in separate hydrolysis and fermentation experiments on Arundo donax, a non-food dedicated energy crop. An average concentration of about 17g/L of succinic acid and a yield on consumed sugars of 0.75mol/mol were obtained demonstrating strain potential for further process improvement. Small scale experiments indicated that the concentration of acetic acid in the medium is crucial to improve productivity; on the other hand, interestingly, short-term (24h) adaptation to higher acetic acid concentrations, and strain recovery, were also observed.


Asunto(s)
Microbiología Industrial/métodos , Pasteurellaceae/metabolismo , Poaceae/química , Ácido Succínico/metabolismo , Ácido Acético , Anaerobiosis , Medios de Cultivo/química , Fermentación , Hidrólisis , Proyectos Piloto
5.
AMB Express ; 4: 55, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25024928

RESUMEN

Polysaccharidases from extremophiles are remarkable for specific action, resistance to different reaction conditions and other biotechnologically interesting features. In this article the action of crude extracts of thermophilic microorganisms (Thermotoga neapolitana, Geobacillus thermantarcticus and Thermoanaerobacterium thermostercoris) is studied using as substrate hemicellulose from one of the most interesting biomass crops, the giant reed (Arundo donax L.). This biomass can be cultivated without competition and a huge amount of rhizomes remains in the soil at the end of cropping cycle (10-15 years) representing a further source of useful molecules. Optimization of the procedure for preparation of the hemicellulose fraction from rhizomes of Arundo donax, is studied. Polysaccharidases from crude extracts of thermophilic microorganisms revealed to be suitable for total degradative action and/or production of small useful oligosaccharides from hemicelluloses from A. donax. Xylobiose and interesting tetra- and pentasaccharide are obtained by enzymatic action in different conditions. Convenient amount of raw material was processed per mg of crude enzymes. Raw hemicelluloses and pretreated material show antioxidant activity unlike isolated tetra- and pentasaccharide. The body of results suggest that rhizomes represent a useful raw material for the production of valuable industrial products, thus allowing to increase the economic efficiency of A. donax cultivation.

6.
Extremophiles ; 15(2): 213-20, 2011 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-21287211

RESUMEN

A novel haloalkaliphilic, facultative anaerobic and Gram-negative Salinivibrio-like microorganism (designated strain BAG(T)) was recovered from a saline lake in Ras Mohammed Park (Egypt). Cells were motile, curved rods, not spore-forming and occurred singly. Strain BAG(T) grew optimally at 35°C (temperature growth range 25-40°C) with 10.0% (w/v) NaCl [NaCl growth range 6.0-16.0% (w/v)] and at pH 9.0 (pH growth range 6.0-10.0). Strain BAG(T) had phosphatidylethanolamine (PEA) and phosphatidylglycerol (PG) as the main polar lipids, C16:0 (54.0%) and C16:1 (26.0%) as the predominant cellular fatty acids and Q-8 as the major respiratory quinone. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain BAG(T) was a member of Salinivibrio genus, with the highest sequence similarities of 99.1, 98.4 and 98.1% to Salinivibrio siamensis JCM 14472(T), Salinivibrio proteolyticus DSM 19052(T) and Salinivibrio costicola subsp. alcaliphilus DSM 16359(T), respectively. DNA-DNA hybridization values of strain BAG(T) with members of Salinivibrio genus were lower than 55.0%. DNA G + C content was 51.0 mol%. On the basis of the polyphasic taxonomic results revealed in this study, strain BAG(T) should be classified as a novel species of Salinivibrio genus, for which the name Salinivibrio sharmensis sp. nov. is proposed, with the type strain BAG(T) (=ATCC BAA-1319(T) = DSM 18182(T)).


Asunto(s)
Vibrionaceae/genética , Carbohidratos/química , ADN/química , ADN/genética , Concentración de Iones de Hidrógeno , Lípidos/química , Datos de Secuencia Molecular , Hibridación de Ácido Nucleico , Fosfatidiletanolaminas/química , Fosfatidilgliceroles/química , Filogenia , Quinonas/química , ARN Ribosómico 16S/genética , Cloruro de Sodio/química , Temperatura , Microbiología del Agua
7.
Extremophiles ; 14(2): 233-40, 2010 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-20155430

RESUMEN

A novel thermophilic, anaerobic, rod-shaped bacterium strain, designated Buff, was isolated from buffalo-dung samples collected from a buffalo-farm located in Caserta (Campania, south of Italy). Strain Buff was Gram-positive, motile and no spore-forming. The growth temperature range was 40-65 degrees C with an optimum at 60 degrees C, while pH growth range at 60 degrees C was 5.5-8.0 with an optimum at about pH 6.5. NaCl growth concentration ranged from 0 to 2.0% with an optimum at 0.5% (w/v); no growth was observed with the presence of NaCl 3.0% (w/v). The strain produced ethanol, acetate, lactate, H(2), H(2)S and CO(2) by glucose fermentation. The DNA G + C content was 34.4 mol%. As determined by 16S rRNA sequence analysis, this organism belonged to the genus Thermoanaerobacterium. On the basis of the physiological and molecular properties, we propose for strain Buff the new species designation Thermoanaerobacterium thermostercus sp. nov. This novel organism represents the first species of the genus Thermoanaerobacterium isolated from buffalo-dung. The type strain is Buff (=DSM 22141 = ATCC BAA-1776).


Asunto(s)
Búfalos/microbiología , Thermoanaerobacterium/aislamiento & purificación , Thermoanaerobacterium/metabolismo , Animales , Composición de Base , ADN Bacteriano/química , ADN Bacteriano/genética , Heces/microbiología , Italia , Datos de Secuencia Molecular , Filogenia , ARN Bacteriano/genética , ARN Ribosómico 16S/genética , Thermoanaerobacterium/clasificación , Thermoanaerobacterium/genética
8.
Extremophiles ; 13(2): 345-54, 2009 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-19125220

RESUMEN

This is the first report describing the purification and enzymatic properties of a native invertase (beta-D-fructosidase) in Thermotogales. The invertase of the hydrogen-producing thermophilic bacterium Thermotoga neapolitana DSM 4359 (hereby named Tni) was a monomer of about 47 kDa having an amino acid sequence quite different from other invertases studied up to now. Its properties and substrates specificity let us classify this protein as a solute-binding protein with invertase activity. Tni was specific for the fructose moiety and the enzyme released fructose from sucrose and raffinose and the fructose polymer inulin was hydrolyzed in an endo-type fashion. Tni had an optimum temperature of 85 degrees C at pH 6.0. At temperatures of 80-85 degrees C, the enzyme retained at least 50% of its initial activity during a 6 h preincubation period. Tni had a K(m) and k(cat)/K(m) values (at 85 degrees C and pH 6.0) of about 14 mM and 5.2 x 10(8) M(-1) s(-1), respectively.


Asunto(s)
Thermotoga neapolitana/enzimología , beta-Fructofuranosidasa/química , Concentración de Iones de Hidrógeno , Hidrólisis , Inulina/química , Iones , Cinética , Metales/química , Modelos Químicos , Polímeros/química , Especificidad por Sustrato , Temperatura
9.
Int J Syst Evol Microbiol ; 58(Pt 4): 886-90, 2008 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-18398188

RESUMEN

A Gram-positive, spore-forming, halophilic bacterial strain, FP5T, was isolated from a salt lake in southern Spain and subjected to a polyphasic taxonomic study. Strain FP5T was strictly aerobic. Cells were coccoidal, occurring singly or in clusters. The cell-wall peptidoglycan type of strain FP5T was A4 beta based on l-Orn-d-Asp. Strain FP5T was characterized chemotaxonomically by having MK-7 as the major menaquinone and anteiso-C15 : 0, anteiso-C17 : 0, iso-C15 : 0 and iso-C16 : 0 as the main fatty acids. The isolate grew optimally at 37 degrees C and in presence of 10 % NaCl; no growth was observed in the absence of NaCl. The DNA G+C content was 43.5 mol%. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain FP5T falls within the evolutionary radiation of species of the genus Halobacillus. Levels of 16S rRNA gene sequence similarity between strain FP5T and the type strains of nine recognized Halobacillus species were in the range 97.0-99.0 %. Levels of DNA-DNA relatedness indicated that strain FP5T represents a genomic species that is distinct from recognized Halobacillus species. Strain FP5T could be differentiated from recognized Halobacillus species based on several phenotypic characteristics. On the basis of phenotypic, phylogenetic and genomic data, strain FP5T is considered to represent a novel species of the genus Halobacillus, for which the name Halobacillus alkaliphilus sp. nov. is proposed. The type strain is FP5T (=DSM 18525T =ATCC BAA-1361T).


Asunto(s)
Bacillaceae/clasificación , Bacillaceae/aislamiento & purificación , Bacillaceae/genética , Bacillaceae/metabolismo , Composición de Base , Secuencia de Bases , Cartilla de ADN/genética , ADN Bacteriano/química , ADN Bacteriano/genética , Ácidos Grasos/metabolismo , Agua Dulce/microbiología , Genes Bacterianos , Datos de Secuencia Molecular , Fenotipo , Filogenia , ARN Bacteriano/genética , ARN Ribosómico 16S/genética , Salinidad , España , Terminología como Asunto
10.
Extremophiles ; 11(6): 789-96, 2007 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-17618404

RESUMEN

An alkalitolerant and halotolerant bacterium, designated strain Sharm was isolated from a salt lake inside Ras Muhammad. The morphological, physiological and genetic characteristics were compared with those of related species of the genus Halomonas. The isolate grew optimally at pH 7.0, 5-15% NaCl at 35 degrees C. The cells were Gram-negative rods, facultative anaerobes. They accumulated glycine-betaine, as a major osmolyte, and ectoine and glutamate as minor components. The strain Sharm(T) biosynthetised alpha-glucosidase. The polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and a novel phosphoglycolipid as major components. Ubiquinone with nine repetitive unities (Q9) was the only quinone found and, nC16:0 and C19:0 with cyclopropane were the main cellular fatty acids, accounting for 87.3% of total fatty acids. The G + C content of the genomic DNA was 64.7 mol %. The 16S rRNA sequence analysis indicated that strain Sharm was a member of the genus Halomonas. The closest relatives of the strain Sharm were Halomonas elongata and Halomonas eurihalina. However, DNA-DNA hybridisation results clearly indicated that strain Sham was a distinct species of Halomonas. On the basis of the evidence, we propose to assign strain Sharm as a new species of the genus Halomonas, H. sinaiensis sp. nov, with strain Sharm(T) as the type strain (DSM 18067(T); ATCC BAA-1308(T)).


Asunto(s)
Sedimentos Geológicos/microbiología , Halomonas/clasificación , Cloruro de Sodio/metabolismo , Microbiología del Agua , Adaptación Fisiológica , Aminoácidos Diaminos/metabolismo , Composición de Base , Betaína/metabolismo , ADN Bacteriano/análisis , Egipto , Genotipo , Ácido Glutámico/metabolismo , Halomonas/enzimología , Halomonas/genética , Halomonas/crecimiento & desarrollo , Halomonas/aislamiento & purificación , Halomonas/metabolismo , Concentración de Iones de Hidrógeno , Fenotipo , Fosfolípidos/metabolismo , Filogenia , ARN Ribosómico 16S , Temperatura , Ubiquinona/metabolismo , Equilibrio Hidroelectrolítico , alfa-Glucosidasas/metabolismo
11.
Int J Syst Evol Microbiol ; 57(Pt 7): 1499-1503, 2007 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-17625183

RESUMEN

An extremely halophilic archaeon belonging to the order Halobacteriales was isolated from Fuente de Piedra salt lake, Spain. This strain, designated FP1(T), was a pleomorphic coccoid, neutrophilic and required at least 15 % (w/v) NaCl for growth. Strain FP1(T) grew at 37-60 degrees C, with optimal growth at 50 degrees C. Mg(2+) was not required, but growth was observed with up to 10 % (w/v) MgSO(4). Polar lipid analysis revealed the presence of mannose-6-sulfate(1-2)-glucose glycerol diether as a major glycolipid. Both C(20)C(20) and C(20)C(25) core lipids were present. The genomic DNA G+C content was 62.0 mol%. Phylogenetic analysis based on comparison of 16S rRNA gene sequences demonstrated that the isolate was most closely related to species of the genus Haloterrigena. DNA-DNA reassociation values between strain FP1(T) and the most closely related species of the genus Haloterrigena (Haloterrigena thermotolerans, Haloterrigena saccharevitans and Haloterrigena limicola) were lower than 29 %. It is therefore considered that strain FP1(T) represents a novel species of the genus Haloterrigena, for which the name Haloterrigena hispanica sp. nov. is proposed. The type strain is FP1(T) (=DSM 18328(T)=ATCC BAA-1310(T)).


Asunto(s)
Halobacteriaceae/clasificación , Halobacteriaceae/aislamiento & purificación , Microbiología del Agua , Composición de Base , ADN de Archaea/química , ADN de Archaea/aislamiento & purificación , ADN Ribosómico/química , ADN Ribosómico/aislamiento & purificación , Genes de ARNr , Glucolípidos/análisis , Halobacteriaceae/química , Halobacteriaceae/fisiología , Cloruro de Magnesio/metabolismo , Datos de Secuencia Molecular , Hibridación de Ácido Nucleico , Filogenia , ARN de Archaea/genética , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Homología de Secuencia de Ácido Nucleico , Cloruro de Sodio/metabolismo , España , Temperatura
12.
Syst Appl Microbiol ; 30(1): 31-8, 2007 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-16621401

RESUMEN

The taxomony of strain CRSS (DSM 15686(T)=ATCC BAA-848(T)) isolated from Cape Russell in Antarctica (Ross Sea, 74 52.35 S 163 53.03 E) was investigated in a polyphasic approach. The morphological, physiological and genetic characteristics were compared with that of related species of the genus Halomonas. The isolate grew optimally at pH 9.0, 10% NaCl at 30 degrees C. The cells were Gram-negative aerobic rods able to produce exopolysaccharide. They accumulated glycine-betaine, as a major osmolyte, with minor components ectoine and glutamate. The strain CRSS biosynthetised alpha-glucosidase. The polar lipid profile consisted of phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol as major components. Ubiquinone with nine repetitive unities (Q9) was the only quinone found and the fatty acid composition was dominated by C18:1 (53%). The G+C content of DNA was 55.0mol% and its phylogenetic position was established by 16S rRNA gene sequencing as a member of the genus Halomonas. For physiological, chemotaxonomic and genetic features (DNA-DNA hybridisation) it is proposed to classify the isolate as a new species for which we propose the name Halomonas alkaliantarctica sp. nov.


Asunto(s)
Sedimentos Geológicos/microbiología , Halomonas/clasificación , Halomonas/fisiología , Polisacáridos Bacterianos/metabolismo , Regiones Antárticas , Composición de Base , Biodiversidad , ADN Bacteriano/química , ADN Ribosómico/genética , Genes de ARNr , Halomonas/química , Halomonas/aislamiento & purificación , Concentración de Iones de Hidrógeno , Lípidos/análisis , Datos de Secuencia Molecular , Filogenia , ARN Ribosómico 16S/genética , Cloruro de Sodio/metabolismo
13.
J Gen Appl Microbiol ; 52(4): 223-34, 2006 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-17116971

RESUMEN

A thermophilic, spore-forming bacterial strain L1(T) was isolated from hot compost "Pomigliano Environment" s.p.a., Pomigliano, Naples, Italy. The strain was identified by using a polyphasic taxonomic approach. L1(T) resulted in an aerobic, gram-positive, rod-shaped, thermophilic with an optimum growth temperature of 68 degrees C chemorganotrophic bacterium which grew on hydrocarbons as unique carbon and energy sources and was resistant to heavy metals. The G+C DNA content was 43.5 mol%. Phylogenetic analysis of 16S rRNA gene sequence and Random Amplified Polymorphic DNA-PCR (RAPD-PCR) analysis of L1(T) and related strains showed that it forms within Geobacillus toebii, a separate cluster in the Geobacillus genus. The composition of cellular fatty acids analyses by Gas-Mass Spectroscopy differed from that typical for the genus Geobacillus in that it is lacking in iso-C15 fatty acid, while iso-C16 and iso-C17 were predominant. Isolates grew on a rich complex medium at temperatures between 55-75 degrees C and presented a doubling time (t(d)) of 2 h and 6 h using complex media and hydrocarbon media, respectively. Among hydrocarbons tested, n-decane (2%) was the more effective to support the growth (1 g/L of wet cells). The microorganism showed resistance to heavy metal tested during the growth. Furthermore, intracellular alpha-galactosidase and alpha-glucosidase enzymatic activities were detectable in the L1(T) strain. Based on phenotypic, phylogenetic, fatty acid analysis and results from DNA-DNA hybridization, we propose assigning a novel subspecies of Geobacillus toebii, to be named Geobacillus toebii subsp. decanicus subsp. nov., with the type strain L1(T) (=DSM 17041=ATCC BAA 1004).


Asunto(s)
Bacillaceae/efectos de los fármacos , Bacillaceae/metabolismo , Hidrocarburos/metabolismo , Metales Pesados/farmacología , Suelo , Bacillaceae/genética , Bacillaceae/aislamiento & purificación , Ácidos Grasos/metabolismo , Filogenia , ARN Ribosómico 16S/metabolismo , Técnica del ADN Polimorfo Amplificado Aleatorio/métodos , Microbiología del Suelo
14.
Res Microbiol ; 157(6): 531-7, 2006.
Artículo en Inglés | MEDLINE | ID: mdl-16797930

RESUMEN

Species of Alicyclobacillus, Bacillus and Thermus genera were selected in order to study the possible presence of the (ADP-ribosyl)ation system. These bacteria are thermophilic, aerobic, and were isolated from different geothermal sources. Both activity and expression of (ADP-ribosyl)ating proteins were tested in cells at different growth phases, and evidence of an active system was obtained in all analyzed microorganisms, with comparable enzymatic levels. Immunochemical analyses with polyclonal antibodies against both eukaryotic anti-(ADP-ribose) transferase and anti-poly(ADP-ribose) polymerase revealed, for all tested organisms, an immunosignal localized in the range of molecular masses between 43-53 kD. Several proteins of various molecular masses were found as ADP-ribose acceptors. Reaction product analyses showed mono(ADP-ribose) to be the only synthesized compound.


Asunto(s)
ADP Ribosa Transferasas/metabolismo , Bacterias/enzimología , Poli(ADP-Ribosa) Polimerasas/metabolismo , Adenosina Difosfato Ribosa/metabolismo , Bacillus/enzimología , Bacillus/crecimiento & desarrollo , Bacterias/crecimiento & desarrollo , Activación Enzimática , Thermus/enzimología , Thermus/crecimiento & desarrollo
15.
Syst Appl Microbiol ; 29(4): 300-7, 2006 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-16682297

RESUMEN

A new thermophilic spore-forming strain MR3CT was isolated from geothermal soil located on Mount Rittmann in Antarctica. Strain MR3CT was Gram-positive, rod-shaped, occurring in pairs or filamentous. Growth was observed between 45 and 65 degrees C (optimum 61 degrees C) and at pH 5.0-6.5 (optimum pH 5.6). It was capable of utilizing galactose, trehalose, maltose and sucrose. The microorganism produced an exopolysaccharide and synthesized an extracellular constitutive amylolytic activity. The G + C content of DNA was 43.5 mol%. On the basis of 16S rRNA gene sequence similarity, strain MR3CT was shown to be related most closely to Anoxybacillus species. Chemotaxonomic data (major isoprenoid quinone-menaquinone-7; major fatty acid-iso-C15:0 and iso-C17:0) supported the affiliation of strain MR3C1T to the genus Anoxybacillus. The results of DNA-DNA hybridization, physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain MR3CT from the validly published Anoxybacillus species. MR3CT therefore represents a new species, for which the name Anoxybacillus amylolyticus sp. nov., is proposed, with the type strain MR3CT (= ATCC BAA-872T = DSM 15939T = CIP 108338T).


Asunto(s)
Amilasas/biosíntesis , Bacterias Grampositivas/clasificación , Bacterias Grampositivas/aislamiento & purificación , Microbiología del Suelo , Regiones Antárticas , Composición de Base , Metabolismo de los Hidratos de Carbono , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Ácidos Grasos/análisis , Ácidos Grasos/aislamiento & purificación , Genes de ARNr/genética , Bacterias Grampositivas/citología , Bacterias Grampositivas/fisiología , Concentración de Iones de Hidrógeno , Microscopía Electrónica de Rastreo , Datos de Secuencia Molecular , Filogenia , Polisacáridos Bacterianos/biosíntesis , Quinonas/análisis , Quinonas/aislamiento & purificación , ARN Bacteriano/genética , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Temperatura , Terpenos/análisis
16.
Int J Syst Evol Microbiol ; 56(Pt 4): 805-810, 2006 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-16585699

RESUMEN

A halophilic, alkalitolerant bacterium, strain 20AGT, was isolated from an algal mat collected from a sulfurous spring located in Santa Maria Incaldana (Mondragone, Campania Region, southern Italy). The isolate is Gram-positive, ferments several carbohydrates and has motile, rod-shaped cells that do not sporulate. The isolate grows at pH 6.5-9.5 and in 5-20 % NaCl. On the basis of 16S rRNA gene sequence similarity, the strain was shown to belong to the genus Oceanobacillus; strain 20AGT showed 96.6 % 16S rRNA gene sequence similarity to the type strain of Oceanobacillus iheyensis, DSM 14371T, and 99.5 % similarity to Oceanobacillus oncorhynchi NCIMB 14022T. Levels of DNA-DNA relatedness between strain 20AGT and O. iheyensis DSM 14371T and O. oncorhynchi NCIMB 14022T were respectively 29.4 and 59.0 %. The G+C content of the DNA of strain 20AGT was 40.1 mol%. The predominant respiratory quinone was MK-7, phosphatidylglycerol and phosphatidylcholine were the predominant polar lipids and minor phospholipids were also detected. ai-C14 : 0, ai-C15 : 0 and i-C15 : 0 were the major fatty acids. Strain 20AGT accumulated osmolytes and produced exopolysaccharide. On the basis of phenotypic characteristics, phylogenetic data and DNA-DNA relatedness data, isolate 20AGT should be designated as the type strain of a subspecies of Oceanobacillus oncorhynchi, for which the name Oceanobacillus oncorhynchi subsp incaldanensis subsp. nov. is proposed. The type strain is 20AGT (=DSM 16557T = ATCC BAA-954T).


Asunto(s)
Bacillaceae/clasificación , Bacillaceae/aislamiento & purificación , Eucariontes/microbiología , Agua Dulce/microbiología , Azufre/metabolismo , Bacillaceae/genética , Eucariontes/crecimiento & desarrollo , Agua Dulce/química , Lípidos/análisis , Datos de Secuencia Molecular , Filogenia , ARN Ribosómico 16S/genética , Cloruro de Sodio/metabolismo
17.
J Gen Appl Microbiol ; 52(6): 339-48, 2006 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-17325447

RESUMEN

A halotolerant and alkaliphilic Gram-negative bacterium, strain 18bAG(T), that grows aerobically at the optimum temperature of 37 degrees C, and at pH 7.5-10 (optimum 9.0), was isolated from a salt pool located in Montefredane in Campania Region (South of Italy). The isolate tolerated high concentration of NaCl up to 20%. Strain 18bAG(T) accumulated osmolytes and polyhydroxybutyrate, produced exopolysaccharide and possessed alpha-glucosidase activity. The predominant respiratory quinones were ubiquinones, Q8 and Q6(6H); phosphoethanolamine, phosphatidylglycerol and diphosphatidylglycerol were the predominant polar lipids. Major fatty acids were C16 : 1, C16 : 0, and C18 : 0. On the basis of 16S rRNA gene sequence similarity, 18bAG(T) was shown to belong to Halomonas genus. Analysis of 16S rRNA gene revealed a high similarity of strain 18bAG(T) to Halomonas venusta (DSM 4743(T)) and Halomonas hydrothermalis (DSM 15725(T)). Level of DNA-DNA relatedness between strain 18bAG(T) and the most related species Halomonas venusta and Halomonas hydrothermalis was 56.0% and 41.2%, respectively. The G+C content (mol%) of DNA was 53.0. The RiboPrinting patterns of Halomonas venusta and 18AG(T) showed a pattern similarity of 0.50. On the basis of genomic information and phenotypic characteristics strain 18bAG(T) represents a new species, for which the name Halomonas alkaliphila sp. nov. is proposed. The type strain is 18bAG(T) (=DSM 16354T =ATCC BAA-953T).


Asunto(s)
Halomonas/clasificación , Halomonas/aislamiento & purificación , Microbiología del Agua , Aerobiosis , Álcalis/química , Composición de Base , Secuencia de Bases , Metabolismo de los Hidratos de Carbono , ADN Ribosómico/análisis , Halomonas/genética , Concentración de Iones de Hidrógeno , Hidroxibutiratos/metabolismo , Italia , Datos de Secuencia Molecular , Filogenia , Polisacáridos Bacterianos/metabolismo , ARN Ribosómico 16S/genética , Sales (Química)/toxicidad
18.
Int J Syst Evol Microbiol ; 55(Pt 6): 2395-2399, 2005 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-16280503

RESUMEN

A halo-alkaliphilic, Gram-positive, non-motile bacterium, designated strain 4AGT, was isolated from a mineral pool located in Malvizza, Campania, southern Italy. On the basis of 16S rRNA gene sequence analysis, strain 4AGT was shown to belong to the genus Alkalibacillus within the phylum Firmicutes; its phylogenetic distance from recognized Alkalibacillus species was <95.0 %. Chemotaxonomic data (MK-7 as the major menaquinone; directly cross-linked meso-diaminopimelic acid in the cell wall; phosphatidylglycerol and diphosphatidylglycerol as major polar lipids; iso-C(15 : 0), anteiso-C(15 : 0) and iso-C(17 : 0) as major fatty acids; and glycine betaine and glutamate as major compatible solutes) supported the affiliation of the strain to the genus Alkalibacillus. The results of DNA-DNA hybridization and physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain 4AGT from the two recognized Alkalibacillus species. Strain 4AGT therefore represents a novel species, for which the name Alkalibacillus filiformis sp. nov. is proposed. The type strain is 4AGT (=DSM 15448T=ATCC BAA-956T).


Asunto(s)
Bacillaceae/aislamiento & purificación , Agua Dulce/microbiología , Minerales , Bacillaceae/clasificación , Bacillaceae/genética , Bacillaceae/metabolismo , Composición de Base , ADN Bacteriano/análisis , ADN Ribosómico/análisis , Ácidos Grasos/análisis , Agua Dulce/química , Italia , Datos de Secuencia Molecular , Hibridación de Ácido Nucleico , ARN Ribosómico 16S/análisis , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
19.
Syst Appl Microbiol ; 28(7): 610-8, 2005 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-16156119

RESUMEN

A Gram-negative, aerobic, motile and rod-shaped haloalkaliphilic bacterial strain 5AGT (DSM 15293 and ATCC BAA-966) was isolated from water with algal mat of a mineral pool in Malvizza site (Campania-Italy) and was subjected to a polyphasic study. The isolate grew at temperature of 10.0-43.0 degrees C with an optimum at 37.0 degrees C. Strain 5AGT grew optimally in the presence of 10% NaCl and grew also in the absence of salt. The isolate grew in the pH range 7.0-10.0 with an optimum at pH 9.0. It accumulated glycine-betaine, ectoine, and glutamate, as osmoprotectants. Strain 5AGT was also characterized chemotaxonomically by having ubiquinone-8 (Q8) as the predominant isoprenoid quinone, phosphoethanolamine (PEA), phosphatidylglycerol (PG) and diphosphatidylglycerol (DPG), as major polar lipids and aiC16:0 and C18:1cis as the major fatty acids. The DNA G+C content was 63.7mol%. Phylogenetic analyses based on 16S rRNA gene sequence showed that the isolate belonged to the genus Halomonas. The DNA-DNA hybridization of the type strain 5AGT with the most related Halomonas campisalis showed a re-association value of 35.0%. On the basis of phenotypic properties and phylogeny, strain 5AGT should be placed in the genus Halomonas as a member of a novel species for which we propose the name Halomonas campaniensis sp. nov.


Asunto(s)
Agua Dulce/microbiología , Halomonas/clasificación , Ácidos Grasos/análisis , Agua Dulce/química , Genes Bacterianos , Genes de ARNr , Halomonas/química , Halomonas/genética , Halomonas/metabolismo , Italia , Lípidos/análisis , Minerales , Datos de Secuencia Molecular , Fenotipo , Filogenia , ARN Ribosómico 16S/genética
20.
J Gen Appl Microbiol ; 51(3): 183-9, 2005 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-16107756

RESUMEN

A novel thermophilic, aerobic, endospore-forming bacterium, designated strain PizzoT, was isolated from geothermal volcanic environment. Samples were collected from the Pizzo sopra la Fossa site at Stromboli Island (Eolian Islands, south of Italy) at the high altitude of 918 m. Cells of strain PizzoT were rod-shaped and stained Gram-positive. Growth was observed between 50 and 75 degrees C (optimum 70 degrees C) and at pH 5.0-8.0 (optimum pH 7.0). NaCl (0.4%, w/v) supported growth and among the hydrocarbons tested none induced growth. The G+C content of the DNA was 54.1 mol% and the sequence analysis of the 16S rRNA gene showed that the new isolate was phylogenetically closely related to the members of the Bacillus rRNA Group 5. DNA-DNA hybridization studies revealed a borderline similarity between the new isolate and Geobacillus thermoleovorans DSM 5366T (69.8%) and Geobacillus kaustophilus DSM 7263T (63.4%). On the basis of phylogenetic analysis and physiological traits of the isolate, it should be described as a new member of the Geobacillus thermoleovorans species and it is proposed that strain PizzoT can be classified as Geobacillus thermoleovorans subsp. stromboliensis, subsp. nov. (ATCC BAA-979T; DSM 15393T).


Asunto(s)
Bacillaceae/clasificación , Microbiología del Suelo , Erupciones Volcánicas , Bacillaceae/genética , Bacillaceae/aislamiento & purificación , Bacillaceae/metabolismo , Técnicas de Tipificación Bacteriana , ADN Bacteriano/análisis , ADN Ribosómico/análisis , Genes de ARNr , Calor , Italia , Datos de Secuencia Molecular , Hibridación de Ácido Nucleico , Fenotipo , Filogenia , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Especificidad de la Especie
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