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1.
Front Microbiol ; 12: 776967, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34867917

RESUMEN

The increasing prevalence of antimicrobial resistance (AMR) in Campylobacter spp. is a global concern. This study evaluated the use of whole-genome sequencing (WGS) to predict AMR in Campylobacter jejuni and C. coli. A panel of 271 isolates recovered from Canadian poultry was used to compare AMR genotype to antimicrobial susceptibility testing (AST) results (azithromycin, ciprofloxacin, erythromycin, gentamicin, tetracycline, florfenicol, nalidixic acid, telithromycin, and clindamycin). The presence of antibiotic resistance genes (ARGs) was determined for each isolate using five computational approaches to evaluate the effect of: ARG screening software, input data (i.e., raw reads, draft genome assemblies), genome coverage and genome assembly software. Overall, concordance between the genotype and phenotype was influenced by the computational pipelines, level of genome coverage and the type of ARG but not by input data. For example, three of the pipelines showed a 99% agreement between detection of a tet(O) gene and tetracycline resistance, whereas agreement between the detection of tet(O) and TET resistance was 98 and 93% for two pipelines. Overall, higher levels of genome coverage were needed to reliably detect some ARGs; for example, at 15X coverage a tet(O) gene was detected in >70% of the genomes, compared to <60% of the genomes for bla(OXA). No genes associated with florfenicol or gentamicin resistance were found in the set of strains included in this study, consistent with AST results. Macrolide and fluoroquinolone resistance was associated 100% with mutations in the 23S rRNA (A2075G) and gyrA (T86I) genes, respectively. A lower association between a A2075G 23S rRNA gene mutation and resistance to clindamycin and telithromycin (92.8 and 78.6%, respectively) was found. While WGS is an effective approach to predicting AMR in Campylobacter, this study demonstrated the impact that computational pipelines, genome coverage and the genes can have on the reliable identification of an AMR genotype.

2.
Foodborne Pathog Dis ; 17(11): 672-678, 2020 11.
Artículo en Inglés | MEDLINE | ID: mdl-32667209

RESUMEN

Antimicrobial resistance (AMR) is a global public health threat. The main purpose of this study was to evaluate AMR in generic Escherichia coli and Salmonella recovered from broiler chickens in Canada. To do this, an analysis of the antimicrobial susceptibility results was performed on a sample of generic E. coli and Salmonella isolates from the 2012 to 2013 national microbiological baseline study in broiler chicken. Of the 1135 generic E. coli isolates tested, 940 (82.8%) were resistant to at least one antimicrobial, with a large number of unique AMR profiles observed. Of the 1495 Salmonella isolates tested, 879 (58.8%) were resistant to at least one antimicrobial. Resistance was most common to aminoglycosides, ß-lactams, and tetracyclines and, for generic E. coli isolates only, folate inhibitors. Differences in AMR patterns were observed across regions for both E. coli and Salmonella. For Salmonella, the levels of resistance were similar across the different sectors sampled along the food chain (e.g., slaughterhouse and retail) and the types of product sampled. There were also considerable differences in the levels and patterns of resistance among different Salmonella serovars, with most Salmonella Enteritidis isolates being susceptible to all antimicrobials tested.


Asunto(s)
Pollos/microbiología , Farmacorresistencia Bacteriana , Escherichia coli/aislamiento & purificación , Salmonella/aislamiento & purificación , Animales , Antibacterianos , Canadá , Contaminación de Alimentos , Microbiología de Alimentos , Carne/microbiología , Pruebas de Sensibilidad Microbiana , Salmonella/efectos de los fármacos
3.
Front Microbiol ; 11: 549, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32318038

RESUMEN

Whole-genome sequencing (WGS) is used increasingly in public-health laboratories for typing and characterizing foodborne pathogens. To evaluate the performance of existing bioinformatic tools for in silico prediction of antimicrobial resistance (AMR) and serotypes of Salmonella enterica, WGS-based genotype predictions were compared with the results of traditional phenotyping assays. A total of 111 S. enterica isolates recovered from a Canadian baseline study on broiler chicken conducted in 2012-2013 were selected based on phenotypic resistance to 15 different antibiotics and isolates were subjected to WGS. Both SeqSero2 and SISTR accurately determined S. enterica serotypes, with full matches to laboratory results for 87.4 and 89.2% of isolates, respectively, and partial matches for the remaining isolates. Antimicrobial resistance genes (ARGs) were identified using several bioinformatics tools including the Comprehensive Antibiotic Resistance Database - Resistance Gene Identifier (CARD-RGI), Center for Genomic Epidemiology (CGE) ResFinder web tool, Short Read Sequence Typing for Bacterial Pathogens (SRST2 v 0.2.0), and k-mer alignment method (KMA v 1.17). All ARG identification tools had ≥ 99% accuracy for predicting resistance to all antibiotics tested except streptomycin (accuracy 94.6%). Evaluation of ARG detection in assembled versus raw-read WGS data found minimal observable differences that were gene- and coverage- dependent. Where initial phenotypic results indicated isolates were sensitive, yet ARGs were detected, repeat AMR testing corrected discrepancies. All tools failed to find resistance-determining genes for one gentamicin- and two streptomycin-resistant isolates. Further investigation found a single nucleotide polymorphism (SNP) in the nuoF coding region of one of the isolates which may be responsible for the observed streptomycin-resistant phenotype. Overall, WGS-based predictions of AMR and serotype were highly concordant with phenotype determination regardless of computational approach used.

4.
Foodborne Pathog Dis ; 17(8): 512-520, 2020 08.
Artículo en Inglés | MEDLINE | ID: mdl-32130036

RESUMEN

Antimicrobial resistance (AMR) is a major public health threat worldwide. The main objective of this study was to compare AMR in Campylobacter from broiler chickens raised on Canadian farms and their products in different geographical regions of Canada. To do this, antimicrobial susceptibility results from isolates of Campylobacter recovered from a national microbiological baseline study conducted in federally registered establishments and in the retail marketplace were analyzed. Among 1460 isolates tested, 774 (53%) were resistant to at least one antimicrobial, with a predominance of three profiles: tetracycline (39%), quinolone-tetracycline (6.6%), and quinolones only (3.5%). The results showed no significant difference in the frequency of resistant profiles (p ≥ 0.05) among the isolates originating from different points in the food processing chain at slaughterhouses and in retail establishments. This suggests that AMR observed in Campylobacter isolates from raw chicken at retail originated further upstream in the system. A difference in the frequency of certain resistance profiles was observed between the regions of Canada. For instance, in British Columbia, there was more resistance to quinolones, while in Ontario and Quebec, Campylobacter isolates were more resistant to tetracyclines, macrolides, ketolides, and lincosamides. Comparison of AMR data from this study with those from the Canadian Integrated Program for Antimicrobial Resistance Surveillance (CIPARS) did not show any significant difference and provides evidence that CIPARS produces nationally representative resistance results.


Asunto(s)
Campylobacter/efectos de los fármacos , Pollos/microbiología , Farmacorresistencia Bacteriana , Carne/microbiología , Mataderos , Animales , Antibacterianos/farmacología , Campylobacter/aislamiento & purificación , Canadá , Contaminación de Alimentos , Microbiología de Alimentos , Abastecimiento de Alimentos , Pruebas de Sensibilidad Microbiana , Quinolonas/farmacología , Tetraciclina/farmacología
5.
Int J Pharm ; 569: 118615, 2019 Oct 05.
Artículo en Inglés | MEDLINE | ID: mdl-31415872

RESUMEN

This work demonstrates that an HSV-2 candidate vaccine can be thermostabilized by spray drying to reduce cold chain demands. This work is also to optimize the process responses by varying spray dry parameters for pre-screened suitable excipients; and to determine the validity of current prescreening techniques. Vaccine activity losses were measured by in vitro plaque forming assay with Vero cell line. An accelerated storage condition of 45 °C for 10 days was used to determine spray dried sample stability. Prescreening studies demonstrated that trehalose and sucrose were superior to other tested excipients spray dry thermal stabilization of HSV-2. Subsequent optimization by design of experiments (DOE) of activity responses to spray dry parameter changes demonstrated significant differences between trehalose and sucrose for stability of the viral vaccine. Model parameters included the drying conditions inlet temperature, spray gas flow rate, and solids concentration for the model responses of vaccine stabilization. Trehalose was an effective and robust stabilizing excipient for spray drying HSV-2 vaccine. In contrast, stabilization by sucrose was greatly dependent on the spray dry process parameters. These DOE differences indicated inadequate excipient selection by prescreening methods and the variability demonstrated current prescreening techniques may not be adequate for determining optimal excipients.


Asunto(s)
Herpesvirus Humano 2/inmunología , Vacunas Virales/administración & dosificación , Animales , Chlorocebus aethiops , Desecación , Composición de Medicamentos/métodos , Estabilidad de Medicamentos , Excipientes/administración & dosificación , Sacarosa/administración & dosificación , Trehalosa/administración & dosificación , Células Vero
6.
Prev Vet Med ; 168: 39-51, 2019 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-31097122

RESUMEN

A national baseline study was conducted between December 2012 and December 2013 to determine the pre-packaging prevalence and concentration of foodborne pathogens on broiler chicken carcasses and parts at processing; a survey was implemented simultaneously to collect data on the processing practices used to control these pathogens. Thirty federally-registered Canadian poultry processing establishments completed the questionnaire. A total of 2,732 samples of carcasses and parts (breast and thigh pieces) were collected over the study period from these establishments. For Salmonella, the overall proportion positive was 0.22 (95% CI 0.20, 0.23), and the mean concentration was 0.67 (95% CI 0.51, 0.83) MPN/mL of rinse fluid. Multivariable regression models with random intercepts for the establishment and the date of sampling were used to identify associations between Salmonella prevalence and concentration and processing practices. In the final logistic regression model for the prevalence outcome (positive or negative sample), there were three statistically significant variables: product type (carcass or part); chilling method (water or air); and chlorine use in the establishment (chlorine, cetylpyridinium chloride, or neither). The likelihood of testing positive for Salmonella was higher on parts than carcasses (OR 3.03, 95% CI 2.38, 3.86), and higher when cetylpyridinium chloride was used (OR 2.00, 95% CI 1.36, 2.95), or when other processing aids were used (OR 1.99, 95% CI 1.26, 3.15), than when chlorine was used. Water chilling was negatively associated with testing positive for Salmonella when compared with air chilling (OR 0.68, 95% CI 0.48, 0.96). In the final linear regression model for the concentration outcome (log10 MPN/mL), there was one statistically significant variable chilling method, where water chilling was associated with a decrease in concentration (ß -0.23, 95% CI -0.38, -0.08 log10 MPN/mL). The intraclass correlation coefficients for establishment and date sampling were 0.02 and 0.23 in the linear regression model, and 0.01 and 0.34 in the logistic regression model, respectively. Further studies to explore the methods to reduce microbial contamination during the air chilling and cut-up and boning processes in broiler chicken establishments in Canada are recommended.


Asunto(s)
Pollos , Manipulación de Alimentos , Enfermedades de las Aves de Corral/epidemiología , Productos Avícolas/microbiología , Salmonelosis Animal/epidemiología , Mataderos , Animales , Canadá/epidemiología , Industria para Empaquetado de Carne , Enfermedades de las Aves de Corral/microbiología , Prevalencia , Salmonella , Salmonelosis Animal/etiología
7.
ACS Biomater Sci Eng ; 4(5): 1669-1678, 2018 May 14.
Artículo en Inglés | MEDLINE | ID: mdl-33445323

RESUMEN

Current global vaccination programs are challenged by costs associated with vaccine cold chain storage and administration. A solid, thermally stable oral dosage form for vaccines would alleviate these costs but is difficult to produce due to general vaccine instability and the complication of bypassing the gastric barrier. We developed a novel consecutive spray drying method that is suitable for use with biologics and employs Eudragit L100 polymer as the enteric coating. More specifically, in step 1, recombinant replication deficient human type-5 adenovirus and vesicular stomatitis virus were encapsulated by spray drying with sugars from a water solution, and in step 2, the microparticles from step 1 were suspended in ethanol with Eudragit and spray dried again. Up to 25% of the starting material was fully encapsulated within the enteric coating, and encapsulation efficiency was largely dependent on spray gas flow rate and the solids concentration in the feed. After step 2, the coated vaccine-sugar particles maintained their thermostability and were slightly larger in size with a rugous surface morphology compared to the particles produced in step 1. The coated particles retained viral vector activity in vitro after 15 min incubation in 1 M HCl (simulating the stomach environment) and anhydrous ethanol (to dissolve the Eudragit outer shell). The production of dry, orally administered vaccine particles from consecutive spray drying offers the potential to remedy a number of vaccine storage, transportation, and administration limitations.

8.
Int J Circumpolar Health ; 76(1): 1380994, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28982302

RESUMEN

Botulism in Nunavik, Quebec is associated with the consumption of aged marine mammal meat and fat. The objective was to identify meat handling practices presenting a risk of contamination of seal meat with C. botulinum. Potential sources of contamination were assessed through interviews with igunaq producers from five communities of Nunavik. These sources were verified by detection and isolation of C. botulinum from igunaq prepared in the field from seal carcasses. Interviews indicated practices presenting a risk for contamination included: placing meat or fat on coastal rocks, using seawater for rinsing, and ageing meat in inverted seal skin pouches. Although the presence of C. botulinum type E spores was detected in only two of 32 (6.3%) meat or fat samples collected during the butchering process, two of four igunaq preparations from these samples contained type E botulinum toxin. Analysis of C. botulinum type E isolates recovered from these preparations indicated that shoreline soil may be a source of contamination. Seal meat and fat may be contaminated with C. botulinum type E during the butchering process. Measures can be adopted to reduce the risks of contamination in the field and possibly decrease the incidence of type E botulism in Nunavik.


Asunto(s)
Clostridium botulinum tipo E/aislamiento & purificación , Manipulación de Alimentos/métodos , Microbiología de Alimentos , Carne/microbiología , Phocidae , Adulto , Anciano , Anciano de 80 o más Años , Animales , Regiones Árticas , Femenino , Inocuidad de los Alimentos/métodos , Humanos , Entrevistas como Asunto , Masculino , Persona de Mediana Edad , Quebec , Agua de Mar/microbiología , Piel/microbiología , Microbiología del Suelo
9.
Vaccine ; 35(22): 2916-2924, 2017 05 19.
Artículo en Inglés | MEDLINE | ID: mdl-28438408

RESUMEN

Cold chain-free vaccine technologies are needed to ensure effective vaccine delivery and coverage, particularly in resource-poor countries. However, the immunogenicity and thermostability of spray dried live viral vector-based vaccines such as recombinant adenoviral-vectored vaccines remain to be investigated. To address this issue, we have spray dried human adenoviral (AdHu5)- and chimpanzee adenoviral (AdCh68)-vectored tuberculosis vaccines in a mannitol and dextran matrix. Spray dried powders containing these two vaccines display the morphologic and chemical properties desired for long-term thermostability and vaccination. Upon reconstitution, they effectively transfected the cells in vitro with relatively small losses in viral infectivity related to the spray drying process. Following in vivo vaccination, AdHu5- and AdCh68-vectored vaccines were as immunogenic as the conventional fresh, cryopreserved liquid vaccine samples. Of importance, even after cold chain-free storage, at ambient temperatures and relatively low humidity for 30 and 90days, the vaccines retained their in vivo immunogenicity, while the liquid vaccine samples stored under the same conditions lost their immune-activating capability almost entirely. Our results support further development of our spray drying technologies for generating thermally stable adenoviral-vectored and other viral-vectored vaccines.


Asunto(s)
Adenoviridae/genética , Inmunogenicidad Vacunal , Vacunas contra la Tuberculosis/inmunología , Potencia de la Vacuna , Vacunas Sintéticas/inmunología , Adenovirus de los Simios , Animales , Desecación , Almacenaje de Medicamentos , Humanos , Manitol , Pan troglodytes , Polvos , Temperatura , Trehalosa , Vacunas contra la Tuberculosis/administración & dosificación , Vacunas contra la Tuberculosis/química , Vacunas Sintéticas/química
10.
J Food Prot ; 80(2): 295-301, 2017 02.
Artículo en Inglés | MEDLINE | ID: mdl-28221989

RESUMEN

A multiplex PCR was developed to identify the two most common serovars of Salmonella causing foodborne illness in Canada, namely, serovars Enteritidis and Typhimurium. The PCR was designed to amplify DNA fragments from four Salmonella genes, namely, invA gene (211-bp fragment), iroB gene (309-bp fragment), Typhimurium STM 4497 (523-bp fragment), and Enteritidis SE147228 (612-bp fragment). In addition, a 1,026-bp ribosomal DNA (rDNA) fragment universally present in bacterial species was included in the assay as an internal control fragment. The detection rate of the PCR was 100% among Salmonella Enteritidis (n = 92) and Salmonella Typhimurium (n = 33) isolates. All tested Salmonella isolates (n = 194) were successfully identified based on the amplification of at least one Salmonella -specific DNA fragment. None of the four Salmonella DNA amplicons were detected in any of the non- Salmonella isolates (n = 126), indicating an exclusivity rate of 100%. When applied to crude extracts of 2,001 field isolates of Salmonella obtained during the course of a national microbiological baseline study in broiler chickens and chicken products sampled from abattoir and retail outlets, 163 isolates, or 8.1%, tested positive for Salmonella Enteritidis and another 80 isolates, or 4.0%, tested as Salmonella Typhimurium. All isolates identified by serological testing as Salmonella Enteritidis in the microbiological study were also identified by using the multiplex PCR. The new test can be used to identify or confirm pure isolates of the two serovars and is also amenable for integration into existing culture procedures for accurate detection of Salmonella colonies.


Asunto(s)
Reacción en Cadena de la Polimerasa Multiplex , Salmonella enteritidis/aislamiento & purificación , Mataderos , Animales , Canadá , Pollos/microbiología , Reacción en Cadena de la Polimerasa , Salmonella/aislamiento & purificación , Salmonella typhimurium/aislamiento & purificación , Serogrupo
11.
Pharm Res ; 33(11): 2763-76, 2016 11.
Artículo en Inglés | MEDLINE | ID: mdl-27450412

RESUMEN

PURPOSE: This work examines the relevance of viral activity in the optimization of spray drying process parameters for the development of thermally stable vaccine powders. In some instances, the actual active pharmaceutical ingredient (API) is not included in the process optimization as it is deemed too costly to use until the final selection of operating conditions, however, that approach is inappropriate for highly labile biopharmaceutics. We investigate the effects of spray drying parameters on i) yield, ii) particle size and iii) viral vector activity of a mannitol/dextran encapsulated recombinant human type 5 adenoviral vector vaccine, to demonstrate the effects and magnitude of each effect on the three responses, and further show that the API must be included earlier in the optimization. METHODS: A design of experiments approach was used with response surface methodology (RSM) to optimize parameters including inlet temperature, spray gas flow rate, liquid feed rate and solute concentration in the feed. RESULTS: In general, good conditions for maintaining viral activity led to reduced yield and fewer particles of the desired size. Within the range of parameters tested, the yield varied from 50 to 90%, the percentage of ideally size particles was 10-50%, and the viral vector titre loss was 0.25-4.0 log loss. CONCLUSIONS: RSM indicates that the most significant spray drying parameters are the inlet temperature and spray gas flow rate. It was not possible to optimize all three output variables with one set of parameters, indicating that there will only be one dominant criteria for processing which in the case of viral vaccines will likely be viral vector activity.


Asunto(s)
Adenoviridae/genética , Vectores Genéticos , Polvos/química , Células A549 , Adenoviridae/fisiología , Desecación/instrumentación , Dextranos/química , Composición de Medicamentos/métodos , Estabilidad de Medicamentos , Humanos , Manitol/química , Tamaño de la Partícula , Temperatura , Vacunas
12.
Int J Pharm ; 506(1-2): 289-301, 2016 Jun 15.
Artículo en Inglés | MEDLINE | ID: mdl-27130366

RESUMEN

We have produced a thermally stable recombinant human type 5 adenoviral vector (AdHu5) through spray drying with three excipient formulations (l-leucine, lactose/trehalose and mannitol/dextran). Spray drying leads to immobilization of the viral vector which is believed to prevent viral protein unfolding, aggregation and inactivation. The spray dried powders were characterized by scanning electron microscopy, differential scanning calorimetry, Karl Fischer titrations, and X-ray diffraction to identify the effects of temperature and atmospheric moisture on the immobilizing matrix. Thermal stability of the viral vector was confirmed in vitro by infection of A549 lung epithelial cells. Mannitol/dextran powders showed the greatest improvement in thermal stability with almost no viral activity loss after storage at 20°C for 90days (0.7±0.3 log TCID50) which is a significant improvement over the current -80°C storage protocol. Furthermore, viral activity was retained over short term exposure (72h) to temperatures as high as 55°C. Conversely, all powders exhibited activity loss when subjected to moisture due to amplified molecular motion of the matrix. Overall, a straightforward method ideal for the production of thermally stable vaccines has been demonstrated through spray drying AdHu5 with a blend of mannitol and dextran and storing the powder under low humidity conditions.


Asunto(s)
Adenovirus Humanos/genética , Excipientes/química , Vectores Genéticos/administración & dosificación , Células A549 , Rastreo Diferencial de Calorimetría , Dextranasa , Vectores Genéticos/química , Humanos , Humedad , Lactosa/química , Leucina/química , Manitol/química , Microscopía Electrónica de Rastreo , Polvos , Temperatura , Factores de Tiempo , Trehalosa/química , Difracción de Rayos X
13.
Emerg Infect Dis ; 19(6): 961-8, 2013 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23735780

RESUMEN

During 1985-2005, a total of 91 laboratory-confirmed outbreaks of foodborne botulism occurred in Canada; these outbreaks involved 205 cases and 11 deaths. Of the outbreaks, 75 (86.2%) were caused by Clostridium botulinum type E, followed by types A (7, 8.1%) and B (5, 5.7%). Approximately 85% of the outbreaks occurred in Alaska Native communities, particularly the Inuit of Nunavik in northern Quebec and the First Nations population of the Pacific coast of British Columbia. These populations were predominantly exposed to type E botulinum toxin through the consumption of traditionally prepared marine mammal and fish products. Two botulism outbreaks were attributed to commercial ready-to-eat meat products and 3 to foods served in restaurants; several cases were attributed to non-Native home-prepared foods. Three affected pregnant women delivered healthy infants. Improvements in botulism case identification and early treatment have resulted in a reduction in the case-fatality rate in Canada.


Asunto(s)
Botulismo/epidemiología , Clostridium botulinum , Brotes de Enfermedades , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Botulismo/historia , Botulismo/transmisión , Canadá/epidemiología , Niño , Preescolar , Clostridium botulinum/clasificación , Clostridium botulinum/aislamiento & purificación , Femenino , Microbiología de Alimentos , Geografía Médica , Historia del Siglo XX , Historia del Siglo XXI , Humanos , Incidencia , Masculino , Persona de Mediana Edad , Morbilidad , Mortalidad , Embarazo , Adulto Joven
14.
Appl Environ Microbiol ; 79(2): 646-54, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-23160120

RESUMEN

The distribution and levels of Clostridium botulinum type E were determined from field sites used by Inuit hunters for butchering seals along the coast of Nunavik. The incidence rates of C. botulinum type E in shoreline soil along the coast were 0, 50, and 87.5% among samples tested for the Hudson Strait, Hudson Bay, and Ungava Bay regions, respectively. Spores were detected in seawater or coastal rock surfaces from 17.6% of butchering sites, almost all of which were located in southern Ungava Bay. Concentrations of C. botulinum type E along the Ungava Bay coast were significantly higher than on the coasts of Hudson Strait and Hudson Bay, with the highest concentrations (270 to 1,800/kg of sample) found near butchering sites located along the mouths of large rivers. The Koksoak River contained high levels of C. botulinum type E, with the highest median concentration (270/kg) found in sediments of the marine portion of the river. C. botulinum type E was found in the intestinal contents (4.4%) and skins (1.4%) of seals. A high genetic biodiversity of C. botulinum type E isolates was observed among the 21 butchering sites and their surroundings along the Nunavik coastline, with 83% of isolates (44/53) yielding distinct pulsed-field gel electrophoresis genotypes. Multiple sources of C. botulinum type E may be involved in the contamination of seal meat during butchering in this region, but the risk of contamination appears to be much higher from environmental sources along the shoreline of southern Ungava Bay and the sediments of the Koksoak River.


Asunto(s)
Clostridium botulinum tipo E/aislamiento & purificación , Microbiología Ambiental , Phocidae/microbiología , Estructuras Animales/microbiología , Animales , Clostridium botulinum tipo E/clasificación , Clostridium botulinum tipo E/genética , ADN Bacteriano/genética , Electroforesis en Gel de Campo Pulsado , Genotipo , Tipificación Molecular , Quebec
16.
J Parasitol ; 94(5): 1161-3, 2008 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-18576814

RESUMEN

The prevalence of Giardia duodenalis and Cryptosporidium spp. was determined for ringed and bearded seals harvested for food in the Nunavik region in northern Quebec, Canada. Flow cytometric results demonstrated that G. duodenalis was present in the intestinal contents of 80% of the ringed seals and 75% of the bearded seals tested, while Cryptosporidium spp. were present in 9% of the ringed seals and none of the bearded seals. Prevalence of both parasites was highest in animals less than 1 yr of age. Giardia sp. isolates from ringed seals were identified as G. duodenalis Assemblage B, which is commonly identified in human infections. The high prevalence of G. duodenalis in ringed seals, and the presence of Assemblage B in these animals, highlights the potential for zoonotic transmission to the Inuit people, who consume dried seal intestines and uncooked seal meat.


Asunto(s)
Criptosporidiosis/veterinaria , Contenido Digestivo/parasitología , Giardiasis/veterinaria , Phocidae/parasitología , Animales , Criptosporidiosis/epidemiología , Criptosporidiosis/transmisión , Cryptosporidium/aislamiento & purificación , ADN Protozoario/química , ADN Protozoario/aislamiento & purificación , Citometría de Flujo , Giardia/genética , Giardia/aislamiento & purificación , Giardiasis/epidemiología , Giardiasis/transmisión , Prevalencia , Quebec/epidemiología , Zoonosis
17.
Environ Pollut ; 147(3): 642-7, 2007 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-17223236

RESUMEN

Willow and rock ptarmigan were obtained from Northern Québec. Willow ptarmigan were found to have mean cadmium concentrations of 179.7 microg/g (dw) in the kidneys and 25.8 microg/g (dw) in the liver; these levels were three times higher than those found in the rock ptarmigan. The cadmium levels in the ptarmigan were below the threshold above which adverse effects can be observed in birds. The difference between the two ptarmigan species in cadmium content is explained by the diet. A comparison of their diet showed that willow, which stores cadmium, is an important food resource for willow ptarmigan but not for rock ptarmigan. Because there is limited information available on the consumption of ptarmigan kidneys and liver by the Inuit, and the fact that this is a traditional way of life and provides nutritional benefits to the Inuit population, no consumption guidelines are proposed.


Asunto(s)
Contaminantes Atmosféricos/análisis , Cadmio/análisis , Galliformes/metabolismo , Animales , Dieta , Exposición a Riesgos Ambientales/efectos adversos , Monitoreo del Ambiente/métodos , Femenino , Riñón/química , Hígado/química , Masculino , Quebec , Salix/química
18.
J Food Prot ; 69(10): 2377-83, 2006 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-17066916

RESUMEN

A method was developed for whole-organism fingerprinting of Clostridium botulinum isolates by focal plane array Fourier transform infrared (FPA-FTIR) spectroscopy. A database of 150,000 infrared spectra of 44 strains of C. botulinum was acquired using a FPA-FTIR imaging spectrometer equipped with a 16 x 16 array detector to evaluate the ability of FTIR spectroscopy to differentiate the 44 strains. The database contained strains from C. botulinum groups I and II producing botulinum neurotoxin of serotypes A, B, E, and F. All strains were grown on each of three agar media (brain heart infusion, McClung Toabe agar base, and universal) prior to spectral acquisition. Given the dependence of the infrared spectra of microorganisms on the composition of the growth medium, the spectra were initially separated into three subsets corresponding to the three growth media employed. However, the replicate spectra of all strains, regardless of growth medium, were properly clustered by hierarchical cluster analysis based on differences in their infrared spectral profiles in three narrow spectral regions (1,428 to 1,412, 1,296 to 1,284, and 1,112 to 1,100 cm(-1)). The dendrogram generated from the FTIR data revealed complete separation between group I and group II strains. The spectral differences between group I and group II strains allowed accurate classification of C. botulinum strains at the group level in two blind validation studies (n = 40). These results demonstrate that FPA-FTIR spectroscopy has the potential for rapid discrimination of group I and group II C. botulinum strains in less than 3 min per sample.


Asunto(s)
Clostridium botulinum/clasificación , Dermatoglifia del ADN/métodos , Microbiología de Alimentos , Filogenia , Espectroscopía Infrarroja por Transformada de Fourier , Secuencia de Bases , Clostridium botulinum/genética , Clostridium botulinum/aislamiento & purificación , Análisis por Conglomerados , ADN Bacteriano/química , Genes Bacterianos , Sensibilidad y Especificidad , Especificidad de la Especie , Espectroscopía Infrarroja por Transformada de Fourier/métodos , Espectroscopía Infrarroja por Transformada de Fourier/normas , Factores de Tiempo
19.
J Clin Microbiol ; 44(5): 1635-44, 2006 May.
Artículo en Inglés | MEDLINE | ID: mdl-16672387

RESUMEN

Pulsed-field gel electrophoresis (PFGE), randomly amplified polymorphic DNA (RAPD) analysis, and automated ribotyping were compared for epidemiological typing of Clostridium botulinum type E using clinical and food isolates associated with four botulism outbreaks occurring in the Canadian Arctic. All type E strains previously untypeable by PFGE, even with the use of a formaldehyde fixation step, could be typed by the addition of 50 microM thiourea to the electrophoresis running buffer. Digestion with SmaI or XhoI followed by PFGE was used to link food and clinical isolates from four different type E botulism outbreaks and differentiate them from among 39 group II strains. Strain differentiation was unsuccessful with the automated ribotyping system, producing a single characteristic EcoRI fingerprint common to all group II strains. RAPD analysis of C. botulinum group II strains was not consistently reproducible with primer OPJ-6 or OPJ-13, apparently discriminating between epidemiologically related strains. A modified PFGE protocol was judged to be the most useful method for typing epidemiologically related C. botulinum type E strains, based on its ability to type all strains reproducibly and with an adequate level of discrimination.


Asunto(s)
Botulismo/epidemiología , Botulismo/microbiología , Clostridium botulinum tipo E , Dermatoglifia del ADN/métodos , Regiones Árticas/epidemiología , Técnicas de Tipificación Bacteriana , Secuencia de Bases , Canadá/epidemiología , Clostridium botulinum tipo E/clasificación , Clostridium botulinum tipo E/genética , Clostridium botulinum tipo E/aislamiento & purificación , ADN Bacteriano/genética , Brotes de Enfermedades , Electroforesis en Gel de Campo Pulsado/métodos , Microbiología Ambiental , Microbiología de Alimentos , Humanos , Técnica del ADN Polimorfo Amplificado Aleatorio , Reproducibilidad de los Resultados , Ribotipificación
20.
Parasitol Res ; 93(6): 507-9, 2004 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-15278445

RESUMEN

This study evaluated the infectivity of Trichinella nativa in freshly frozen walrus meat and traditionally aged walrus meat (igunaq) associated with two human outbreaks of trichinellosis in the Canadian Arctic. Trichinella larvae recovered from walrus meat stored at -20 degrees C for up to 20 months remained infective for guinea pigs inoculated with 135 or 716 larval doses. However, none of the 4-5 and 10-month-old igunaq preparations contained infective T. nativa larvae as measured by bioassays using mice and guinea pigs at inoculation doses ranging from 6 to 500 larvae. This indicates that the degradation process that occurred in the field can be sufficient to either kill Trichinella larvae or render them non-infective for mice and guinea pigs. Further research is needed to evaluate the food safety risk of traditional walrus igunaq aged under different field conditions and storage times.


Asunto(s)
Carne/parasitología , Trichinella/aislamiento & purificación , Trichinella/patogenicidad , Morsas/parasitología , Animales , Regiones Árticas/epidemiología , Brotes de Enfermedades , Humanos , Larva/patogenicidad , Quebec/epidemiología , Trichinella/genética , Triquinelosis/epidemiología
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