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1.
Clin Transl Oncol ; 23(3): 459-467, 2021 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-32617871

RESUMEN

PURPOSE: This study investigated the degree of tumor cell infiltration in the tumor cavity and ventricle wall based on fluorescent signals of 5-aminolevulinic acid (5-ALA) after removal of the magnetic resonance (MR)-enhancing area and analyzed its prognostic significance in glioblastoma. METHODS: Twenty-five newly developed isocitrate dehydrogenase (IDH)-wildtype glioblastomas with complete resection both of MR-enhancing lesions and strong purple fluorescence on resection cavity were retrospectively analyzed. The fluorescent signals of 5-ALA were divided into strong purple, vague pink, and blue colors. The pathologic findings were classified into massively infiltrating tumor cells, infiltrating tumor cells, suspicious single-cell infiltration, and normal-appearing cells. The pathological findings were analyzed according to the fluorescent signals in the resection cavity and ventricle wall. RESULTS: There was no correlation between fluorescent signals and infiltrating tumor cells in the resection cavity (p = 0.199) and ventricle wall (p = 0.704) after resection of the MR-enhancing lesion. The median progression-free survival (PFS) and median overall survival (OS) were 12.5 (± 2.1) and 21.1 (± 3.5) months, respectively. In univariate analysis, the presence of definitive infiltrating tumor cells in the resection cavity and ventricle wall was significantly related to the PFS (p = 0.002) and OS (p = 0.027). In multivariate analysis, the absence of definitive infiltrating tumor cells improved PFS (hazard ratio: 0.184; 95% CI: 0.049-0.690, p = 0.012) and OS (hazard ratio: 0.124; 95% CI: 0.015-0.998, p = 0.050). CONCLUSIONS: After resection both of the MR-enhancing lesions and strong purple fluorescence on resection cavity, there was no correlation between remnant fluorescent signals and infiltrating tumor cells. The remnant definitive infiltrating tumor cells in the resection cavity and ventricle wall significantly influenced the prognosis of patients with glioblastoma. Aggressive surgical removal of infiltrating tumor cells may improve their prognosis.


Asunto(s)
Ácido Aminolevulínico/metabolismo , Neoplasias Encefálicas/patología , Movimiento Celular , Glioblastoma/patología , Isocitrato Deshidrogenasa , Fármacos Fotosensibilizantes/metabolismo , Anciano , Ácido Aminolevulínico/administración & dosificación , Neoplasias Encefálicas/metabolismo , Neoplasias Encefálicas/mortalidad , Neoplasias Encefálicas/cirugía , Ventrículos Cerebrales/metabolismo , Metilasas de Modificación del ADN/genética , Enzimas Reparadoras del ADN/genética , Femenino , Fluorescencia , Glioblastoma/metabolismo , Glioblastoma/mortalidad , Glioblastoma/cirugía , Humanos , Estimación de Kaplan-Meier , Imagen por Resonancia Magnética , Masculino , Persona de Mediana Edad , Fármacos Fotosensibilizantes/administración & dosificación , Pronóstico , Supervivencia sin Progresión , Protoporfirinas/metabolismo , Estudios Retrospectivos , Proteínas Supresoras de Tumor/genética
2.
R. bras. Ci. avíc. ; 22(1): eRBCA-2019-1180, 2020. tab
Artículo en Inglés | VETINDEX | ID: vti-29295

RESUMEN

Two experiments were conducted to evaluate the effects of -mannanase on egg production performance, egg quality, intestinal microbiota, viscosity, and ammonia concentration in laying hens. In Exp. 1, two hundred and seventy 30-wk-old Hy-Line Brown laying hens were assigned to 6 diets arranged in a 3 × 2 factorial of three levels of MEn and CP [(a corn-soybean meal based diet (HEHP), a diet containing 50 kcal of MEn/kg and 1.0% less energy and CP than the HEHP (MEMP), and a diet containing 80 kcal of MEn/kg and 1.5% less energy and CP than HEHP (LELP)], and -mannanase supplementation (0 or 0.04%). In Exp. 2, A total of two hundred and sixteen62-wk-old Hy-Line Brown laying hens were assigned to 6 dietary treatments in a 3 × 2 factorial arrangement. In Exp. 1, -mannanase supplementation increased egg production rate in hens fed LELP diet, but not in those fed HEHP or MEMP diet (interaction, p 0.01), and the interaction was significant (p 0.01) for egg mass. -mannanase supplementation decreased (p 0.05) ammonia concentration. In Exp. 2, the supplementation of -mannanase increased egg production rate and egg mass in hens fed LELP diet, whereas no differences were found in those fed HEHP or MELP diet (interaction, p 0.01). The supplementation of -mannanase in a lower energy and protein diet resulted in similar production performance when compared to high-energy and high-protein diet during early and late stages of egg production.(AU)


Asunto(s)
Animales , Pollos/anatomía & histología , Pollos/microbiología , Huevos/análisis , Huevos/microbiología , Amoníaco
3.
Rev. bras. ciênc. avic ; 22(1): eRBCA, 2020. tab
Artículo en Inglés | VETINDEX | ID: biblio-1490742

RESUMEN

Two experiments were conducted to evaluate the effects of -mannanase on egg production performance, egg quality, intestinal microbiota, viscosity, and ammonia concentration in laying hens. In Exp. 1, two hundred and seventy 30-wk-old Hy-Line Brown laying hens were assigned to 6 diets arranged in a 3 × 2 factorial of three levels of MEn and CP [(a corn-soybean meal based diet (HEHP), a diet containing 50 kcal of MEn/kg and 1.0% less energy and CP than the HEHP (MEMP), and a diet containing 80 kcal of MEn/kg and 1.5% less energy and CP than HEHP (LELP)], and -mannanase supplementation (0 or 0.04%). In Exp. 2, A total of two hundred and sixteen62-wk-old Hy-Line Brown laying hens were assigned to 6 dietary treatments in a 3 × 2 factorial arrangement. In Exp. 1, -mannanase supplementation increased egg production rate in hens fed LELP diet, but not in those fed HEHP or MEMP diet (interaction, p 0.01), and the interaction was significant (p 0.01) for egg mass. -mannanase supplementation decreased (p 0.05) ammonia concentration. In Exp. 2, the supplementation of -mannanase increased egg production rate and egg mass in hens fed LELP diet, whereas no differences were found in those fed HEHP or MELP diet (interaction, p 0.01). The supplementation of -mannanase in a lower energy and protein diet resulted in similar production performance when compared to high-energy and high-protein diet during early and late stages of egg production.


Asunto(s)
Animales , Amoníaco , Pollos/anatomía & histología , Pollos/microbiología , Huevos/análisis , Huevos/microbiología
4.
R. bras. Ci. avíc. ; 21(1): [eRBCA-2019-0791], mai. 2019. tab
Artículo en Inglés | VETINDEX | ID: vti-21168

RESUMEN

This study was conducted to investigate the effects of dietary oxidized oil and natural polyphenol antioxidants on laying performances and egg quality of laying hens. A total of two hundred, 61-week-old Lohmann Brown laying hens were divided into five groups, consisting in four replicates of 10 birds each. They were fed one of the five experimental diets (fresh oil only, oxidized oil without antioxidants, oxidized oil with vitamin E 200 ppm, oxidized oil with vitamin E 100 ppm + Cabanin CSD 100 ppm, oxidized oil with Cabanin CSD 500 ppm)respectively, for 6 weeks. There were no significant differences in laying performances and egg weight among the treatments. However, egg mass in group fed oxidized oil with vitamin E 100 ppm + Cabanin CSD 100 ppmwas significantly higher than group fed oxidized oil only (p 0.05). Eggshell thickness and eggshell strength was not affected by feeding of oxidized oil and antioxidants. Haugh unit checked after storage of 14 d from the end date of the trial showed significant difference (p 0.05). Serum superoxide dismutase (SOD) like activity was significantly higher in antioxidant treated groups. The level of serum glutamic oxaloacetic transaminase (GOT) was significantly lower in groups fed vitamin E 100 ppm + Cabanin CSD 100 ppm or Cabanin CSD 500 ppm compared to groups fed oxidized oil without antioxidant. The number of total microbes, lactobacilli, and Enterocossus faecium showed significant difference favored to antioxidants groups. This study indicates that addition of oxidized oil to layer diet may have harmful effect on oxidative status and egg quality, but concurrent addition of vitamin E and natural polyphenol can alleviate the toxic effect of oxidized oil.(AU)


Asunto(s)
Animales , Pollos/metabolismo , Antioxidantes/análisis , Polifenoles/análisis , Aceites , Vitamina E
5.
Rev. bras. ciênc. avic ; 21(1): [eRBCA-2019-0791], abr. 2019. tab
Artículo en Inglés | VETINDEX | ID: biblio-1490613

RESUMEN

This study was conducted to investigate the effects of dietary oxidized oil and natural polyphenol antioxidants on laying performances and egg quality of laying hens. A total of two hundred, 61-week-old Lohmann Brown laying hens were divided into five groups, consisting in four replicates of 10 birds each. They were fed one of the five experimental diets (fresh oil only, oxidized oil without antioxidants, oxidized oil with vitamin E 200 ppm, oxidized oil with vitamin E 100 ppm + Cabanin CSD 100 ppm, oxidized oil with Cabanin CSD 500 ppm)respectively, for 6 weeks. There were no significant differences in laying performances and egg weight among the treatments. However, egg mass in group fed oxidized oil with vitamin E 100 ppm + Cabanin CSD 100 ppmwas significantly higher than group fed oxidized oil only (p 0.05). Eggshell thickness and eggshell strength was not affected by feeding of oxidized oil and antioxidants. Haugh unit checked after storage of 14 d from the end date of the trial showed significant difference (p 0.05). Serum superoxide dismutase (SOD) like activity was significantly higher in antioxidant treated groups. The level of serum glutamic oxaloacetic transaminase (GOT) was significantly lower in groups fed vitamin E 100 ppm + Cabanin CSD 100 ppm or Cabanin CSD 500 ppm compared to groups fed oxidized oil without antioxidant. The number of total microbes, lactobacilli, and Enterocossus faecium showed significant difference favored to antioxidants groups. This study indicates that addition of oxidized oil to layer diet may have harmful effect on oxidative status and egg quality, but concurrent addition of vitamin E and natural polyphenol can alleviate the toxic effect of oxidized oil.


Asunto(s)
Animales , Antioxidantes/análisis , Pollos/metabolismo , Polifenoles/análisis , Vitamina E , Aceites
6.
Vaccine ; 36(12): 1570-1576, 2018 03 14.
Artículo en Inglés | MEDLINE | ID: mdl-29472132

RESUMEN

In 2010 serotype O foot-and-mouth disease virus of the Mya98 lineage/SEA topotype spread into most East Asian countries. During 2010-2011 it was responsible for major outbreaks in the Republic of Korea where a monovalent O/Manisa vaccine (belonging to the ME-SA topotype) was applied to help control the outbreaks. Subsequently, all susceptible animals were vaccinated every 6 months with a vaccine containing the O/Manisa antigen. Despite vaccination, the disease re-occurred in 2014 and afterwards almost annually. This study focuses on the in vivo efficacy in pigs of a high quality monovalent commercial O1/Campos vaccine against heterologous challenge with a representative 2015 isolate from the Jincheon Province of the Republic of Korea. Initially, viral characterizations and r1 determinations were performed on six viruses recovered in that region during 2014-2015, centering on their relationship with the well characterized and widely available O1/Campos vaccine strain. Genetic and antigenic analysis indicated a close similarity among 2014-2015 Korean isolates and with the previous 2010 virus, with distinct differences with the O1/Campos strain. Virus neutralisation tests using O1/Campos cattle and pig post vaccination sera and recent Korean outbreak viruses predicted acceptable cross-protection after a single vaccination, as indicated by r1 values, and in pigs, by expectancy of protection. In agreement with the in vitro estimates, in vivo challenge with a selected field isolate indicated that O1/Campos primo vaccinated pigs were protected, resulting in a PD50 value of nearly 10. The results indicated that good quality oil vaccines containing the O1/Campos strain can successfully be used against isolates belonging to the O Mya98/SEA topotype.


Asunto(s)
Virus de la Fiebre Aftosa/inmunología , Fiebre Aftosa/prevención & control , Inmunización , Enfermedades de los Porcinos/prevención & control , Vacunas Virales/inmunología , Animales , Anticuerpos Neutralizantes/inmunología , Anticuerpos Antivirales/inmunología , Antígenos Virales/inmunología , Línea Celular , Protección Cruzada , Virus de la Fiebre Aftosa/clasificación , Virus de la Fiebre Aftosa/genética , Variación Genética , Filogenia , República de Corea , Porcinos
7.
Annu Int Conf IEEE Eng Med Biol Soc ; 2017: 4317-4320, 2017 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-29060852

RESUMEN

A real-time, feedback-capable, variable spectrum lighting system was recently installed at the University of New Mexico Hospital to facilitate biomedical research on the health impacts of lighting. The system consists of variable spectrum troffers, color sensors, occupancy sensors, and computing and communication infrastructure, and is the only such clinical facility in the US. The clinical environment posed special challenges for installation as well as for ongoing maintenance and operations. Pilot studies are currently underway to evaluate the effectiveness of the system to regulate circadian phase in subjects with delayed sleep-wake phase disorder.


Asunto(s)
Iluminación , Ritmo Circadiano , Humanos , México , Trastornos del Sueño-Vigilia
8.
Genet Mol Res ; 15(4)2016 Oct 17.
Artículo en Inglés | MEDLINE | ID: mdl-27813582

RESUMEN

Salinity is a major environmental stress to plants. In this study, the ability of plants to tolerate salt was investigated by studying growth, physiological characteristics, and expression levels of genes related to the salt-stress response in the salt-tolerant rice mutant (Till-II-877), which was derived from γ-ray irradiation. Compared to plants grown under normal conditions, the height and root length of wild type (WT) were reduced by approximately 40 and 29% following exposure to salt stress for 3 weeks, whereas Till-II-877 line showed 29 and 23% reductions in plant height and root length, respectively. No significant changes were observed in total chlorophyll content, and the malondialdehyde content of the mutant increased less than that of the WT under salt treatment. Gene expression was compared between the WT and mutant lines using microarray analysis. An unbiased analysis of the gene expression datasets allowed us to identify the pathways involved in salt-stress responses. Among the most significantly affected pathways, changes in gene expression were observed in α-linolenic acid and linoleic acid metabolism (in lipid metabolism), fructose and mannose metabolism and glycolysis-gluconeogenesis (in carbohydrate metabolism), cysteine and methionine metabolism (in amino acid metabolism), and carbon fixation (in the energy metabolism of photosynthetic organisms) under salt stress. These results show that the differential response of plants subjected to salt stress was due to changes in multiple metabolic pathways. These findings increase our understanding of the effects of salt stress in rice and may aid in the development of salt-tolerant rice cultivars.


Asunto(s)
Regulación de la Expresión Génica de las Plantas , Genoma de Planta , Mutación/genética , Oryza/genética , Oryza/fisiología , Estrés Fisiológico/genética , Carotenoides/metabolismo , Clorofila/metabolismo , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Ontología de Genes , Genes de Plantas , Malondialdehído/metabolismo , Redes y Vías Metabólicas/efectos de los fármacos , Redes y Vías Metabólicas/genética , Oryza/efectos de los fármacos , Oryza/crecimiento & desarrollo , Cloruro de Sodio/farmacología , Estrés Fisiológico/efectos de los fármacos , Transcripción Genética/efectos de los fármacos
9.
Genet Mol Res ; 15(3)2016 Aug 30.
Artículo en Inglés | MEDLINE | ID: mdl-27706663

RESUMEN

We analyzed the publicly available ChromHMM BED files of the ENCODE project and tested the Markov properties of the different chromatin states in the human genome. Nucleotide frequency profiles of regional chromatin segmentations were analyzed, and Markov chains were built to detect Markov properties in the chromatin states of different ChromHMM regions. By estimating the transition probabilities of 200-base pair nucleotide sequences of the human genome, we constructed a nucleotide-sequence-based Markovian chromatin map called SeqChromMM.


Asunto(s)
Cromatina/genética , Cromosomas Humanos/genética , Mapeo Cromosómico , Epigénesis Genética , Genoma Humano , Humanos , Cadenas de Markov , Análisis de Secuencia de ADN
10.
Genet Mol Res ; 15(3)2016 Aug 30.
Artículo en Inglés | MEDLINE | ID: mdl-27706670

RESUMEN

Recent advances in computational epigenetics have provided new opportunities to evaluate n-gram probabilistic language models. In this paper, we describe a systematic genome-wide approach for predicting functional roles in inactive chromatin regions by using a sequence-based Markovian chromatin map of the human genome. We demonstrate that Markov chains of sequences can be used as a precursor to predict functional roles in heterochromatin regions and provide an example comparing two publicly available chromatin annotations of large-scale epigenomics projects: ENCODE project consortium and Roadmap Epigenomics consortium.


Asunto(s)
Cromatina/genética , Secuencia de Bases , Línea Celular , Mapeo Cromosómico , Biología Computacional , Epigénesis Genética , Genoma Humano , Humanos , Modelos Genéticos , Modelos Estadísticos , Anotación de Secuencia Molecular , Análisis de Secuencia de ADN , Programas Informáticos
11.
R. bras. Ci. avíc. ; 18(3): 511-517, Jul-Set. 2016. tab
Artículo en Inglés | VETINDEX | ID: vti-15438

RESUMEN

The present study was conducted to evaluate the effects of feeding broilers with garlic fermented by Leuconostoc citreum SK2556. A total of 250 male broiler chicks was randomly housed into 25 floor pens. Five dietary treatments with five replicates of 10 chicks each (n=50 chicks/treatment). A corn and soybean meal based diet was used as the control diet (NC). The experimental diets were formulated by mixing the basal diet either with antibiotics (10 ppm; PC) or fermented garlic (FG) at the concentrations of 0.1% (FG1), 0.3% (FG3) or 0.5% (FG5) in diets. Daily weight gain, feed intake, and feed:gain ratio were not affected by any of the dietary treatments. Average daily gain on day 21 linearly increased (p= 0.024) with increasing FG levels. The relative weight of the bursa of Fabricius showed a progressive decline with increasing the FG levels. Jejunal villus height was not influenced by dietary treatments. Villus width linearly decreased as FG levels increased (p= 0.17). Jejunal crypt depth was significantly lower (p < 0.05) in the FG1 and FG3 groups compared with the NC group. Villus height: crypt depth ratio linearly increased (p= 0.018) with increasing FG levels. The population of cecal microflora was not altered by dietary treatments. Broiler chickens fed the FG5 diet exhibited (p < 0.05) higher blood levels of total protein and cholesterol compared with those fed the NC diet. Collectively, the results show that dietary FG marginally affected growth performance, especially during the first days rearing, improved intestinal morphology, and altered blood characteristics of broiler chickens.(AU)


Asunto(s)
Animales , Ajo/fisiología , Aditivos Alimentarios/administración & dosificación , Fenómenos Fisiológicos Nutricionales de los Animales , Dieta/veterinaria , Pollos/crecimiento & desarrollo , /análisis , Microbioma Gastrointestinal/fisiología
12.
Rev. bras. ciênc. avic ; 18(3): 511-517, Jul-Set. 2016. tab
Artículo en Inglés | VETINDEX | ID: biblio-1490277

RESUMEN

The present study was conducted to evaluate the effects of feeding broilers with garlic fermented by Leuconostoc citreum SK2556. A total of 250 male broiler chicks was randomly housed into 25 floor pens. Five dietary treatments with five replicates of 10 chicks each (n=50 chicks/treatment). A corn and soybean meal based diet was used as the control diet (NC). The experimental diets were formulated by mixing the basal diet either with antibiotics (10 ppm; PC) or fermented garlic (FG) at the concentrations of 0.1% (FG1), 0.3% (FG3) or 0.5% (FG5) in diets. Daily weight gain, feed intake, and feed:gain ratio were not affected by any of the dietary treatments. Average daily gain on day 21 linearly increased (p= 0.024) with increasing FG levels. The relative weight of the bursa of Fabricius showed a progressive decline with increasing the FG levels. Jejunal villus height was not influenced by dietary treatments. Villus width linearly decreased as FG levels increased (p= 0.17). Jejunal crypt depth was significantly lower (p < 0.05) in the FG1 and FG3 groups compared with the NC group. Villus height: crypt depth ratio linearly increased (p= 0.018) with increasing FG levels. The population of cecal microflora was not altered by dietary treatments. Broiler chickens fed the FG5 diet exhibited (p < 0.05) higher blood levels of total protein and cholesterol compared with those fed the NC diet. Collectively, the results show that dietary FG marginally affected growth performance, especially during the first days rearing, improved intestinal morphology, and altered blood characteristics of broiler chickens.


Asunto(s)
Animales , Aditivos Alimentarios/administración & dosificación , Ajo/fisiología , Dieta/veterinaria , Fenómenos Fisiológicos Nutricionales de los Animales , Pollos/crecimiento & desarrollo , Microbioma Gastrointestinal/fisiología
13.
R. bras. Ci. avíc. ; 18(2): 351-356, apr.-jun. 2016. tab
Artículo en Inglés | VETINDEX | ID: vti-338209

RESUMEN

This experiment was conducted to evaluate the dietary supplementation of canola meal (CM) on the growth performance, carcass characteristics, antibody titers against Newcastle disease virus and Infectious bronchitis virus, and blood profiles of broiler chickens. In total 600 day-old feather-sexed Ross male broiler chicks were randomly assigned into five treatments with six replicates of 20 birds each for 35 days. Treatments consisted of five experimental diets containing 0 (control), 3, 5, 10, or 15% canola meal (CM). Final body weight (BW) was not affected by the dietary treatments. Daily BW gain (DWG) and feed intake linearly decreased as dietary CM inclusion increased during the starter phase (p 0.0001), but not during the grower and total rearing periods. Chicks fed the diet with 15% CM presented the lowest DWG during the starter phase. Breast meat yield of CM-fed chicks linearly decreased as CM inclusion level increased (p=0.0014). Dietary CM supplementation did not influence organ relative weights, except for the spleen, meat quality, or blood profile. The results suggest that the CM may replace soybean meal (SBM) with no detrimental effects on overall growth performance or physiological responses of broiler chickens. However, it is recommended that supplementing excess amount of CM into broilers' diet should be taken into account in practical diet formulation as it could impair growth performance at early age and lower breast meat yields.(AU)


Asunto(s)
Animales , Alimentación Animal/análisis , Alimentación Animal , Carne/análisis , Brassica napus/metabolismo , Pollos/sangre
14.
Rev. bras. ciênc. avic ; 18(2): 351-356, apr.-jun. 2016. tab
Artículo en Inglés | VETINDEX | ID: biblio-1490251

RESUMEN

This experiment was conducted to evaluate the dietary supplementation of canola meal (CM) on the growth performance, carcass characteristics, antibody titers against Newcastle disease virus and Infectious bronchitis virus, and blood profiles of broiler chickens. In total 600 day-old feather-sexed Ross male broiler chicks were randomly assigned into five treatments with six replicates of 20 birds each for 35 days. Treatments consisted of five experimental diets containing 0 (control), 3, 5, 10, or 15% canola meal (CM). Final body weight (BW) was not affected by the dietary treatments. Daily BW gain (DWG) and feed intake linearly decreased as dietary CM inclusion increased during the starter phase (p 0.0001), but not during the grower and total rearing periods. Chicks fed the diet with 15% CM presented the lowest DWG during the starter phase. Breast meat yield of CM-fed chicks linearly decreased as CM inclusion level increased (p=0.0014). Dietary CM supplementation did not influence organ relative weights, except for the spleen, meat quality, or blood profile. The results suggest that the CM may replace soybean meal (SBM) with no detrimental effects on overall growth performance or physiological responses of broiler chickens. However, it is recommended that supplementing excess amount of CM into broilers' diet should be taken into account in practical diet formulation as it could impair growth performance at early age and lower breast meat yields.


Asunto(s)
Animales , Brassica napus/metabolismo , Carne/análisis , Alimentación Animal , Alimentación Animal/análisis , Pollos/sangre
15.
Genet Mol Res ; 14(4): 15668-82, 2015 Dec 02.
Artículo en Inglés | MEDLINE | ID: mdl-26634535

RESUMEN

Meat pH is an important factor influencing meat quality traits in swine. This study evaluated a large number of genetic variants that covered all of the swine chromosomal regions. Approximately 68,000 single nucleotide polymorphisms (SNPs), found on Illumina Porcine SNP chips, were tested for associations with meat pH values. A genome-wide association study (GWAS) found that 19 SNPs on Sus scrofa chromosome 4 were significantly associated with pH. Two major candidate genomic regions were defined: a 1.08-Mb region (at nucleotide 30118313 to 31207050) contained 10 significant SNPs, based on an effect value of 5.0; and a 2.7-Mb genomic region (at nucleotide 73293076 to 76023681) contained 9 significant SNPs. Three putative genes--PKHD1L1, VCPIP1, and LOC102166532--were identified by GWAS near significant SNPs. These genes may account for variations in pH levels. Three pseudogenes and two non-coding RNAs were also detected by GWAS analysis. Estimations of expected and observed P values for pH revealed significant departures from the null hypothesis. A total of 9 haplotype blocks (HB) were constructed: HBs 1, 3, and 5 showed significant effects on pH24 and pH45, whereas an association was not confirmed between pH24 and HBs 4, 6, and 8. Findings from this study indicate that the three genes identified may influence pH of pig meat.


Asunto(s)
Estudio de Asociación del Genoma Completo , Concentración de Iones de Hidrógeno , Carne/análisis , Carácter Cuantitativo Heredable , Alelos , Animales , Mapeo Cromosómico , Femenino , Variación Genética , Haplotipos , Desequilibrio de Ligamiento , Fenotipo , Polimorfismo de Nucleótido Simple , Sitios de Carácter Cuantitativo , Porcinos
16.
Genet Mol Res ; 14(3): 8581-8, 2015 Jul 31.
Artículo en Inglés | MEDLINE | ID: mdl-26345789

RESUMEN

This study was conducted to evaluate the porcine gene GADD45A (growth arrest and DNA-damage-inducible protein 45 alpha) as a positional candidate controlling quantitative trait loci (QTL) for meat quality traits on chromosome 6 (SSC6). Four exons of the porcine GADD45A gene were defined from cDNA and BAC clone sequences. A total of 4 single nucleotide polymorphisms (SNPs) were identified in porcine GADD45A. The association of these SNPs (g.196A>G, g.392C>A, g.955T>C and g.3247A>T) with meat quality traits was evaluated in 678 Berkshire pigs. The genotype distribution of only one SNP (g.3247A>T) conformed to Hardy Weinberg equilibrium in the pig population analyzed in this study, and the other SNPs were not in Hardy-Weinberg equilibrium. All four SNPs were significantly associated with meat quality traits. Three SNPS (g.196A>G, g.392C>A, and g.955T>C) showed similar significant association patterns for drip loss, cooking loss, meat color (lightness; MC_L and yellowness; MC_B), shear force and water-holding capacity traits. By contrast, g.3247A>T had a different association pattern with other traits such as intramuscular fat content (IMF) and backfat thickness (BF), drip loss, MC_L, and moisture. These findings will provide useful information for genetic characterization or association studies in other pig populations. Additionally, these markers can potentially be applied in pig breeding programs to improve meat quality traits, including IMF and BF.


Asunto(s)
Péptidos y Proteínas de Señalización Intracelular/genética , Carne/normas , Polimorfismo de Nucleótido Simple , Sus scrofa/genética , Adiposidad , Animales , Secuencia de Bases , Femenino , Calidad de los Alimentos , Frecuencia de los Genes , Estudios de Asociación Genética , Masculino , Músculo Esquelético , Análisis de Secuencia de ADN , Proteinas GADD45
17.
Genet Mol Res ; 12(4): 5335-47, 2013 Nov 07.
Artículo en Inglés | MEDLINE | ID: mdl-24301794

RESUMEN

Chrysanthemums are well known for their esthetic and medicinal values. Characterization of chrysanthemums is vital for their conservation and management as well as for understanding their genetic relationships. We found 12 simple sequence repeat markers (SSRs) of 100 designed primers to be polymorphic. These novel SSR markers were used to evaluate 95 accessions of chrysanthemums (3 indigenous and 92 cultivated accessions). Two hundred alleles were identified, with an average of 16.7 alleles per locus. KNUCRY-77 gave the highest polymorphic information content value (0.879), while KNUCRY-10 gave the lowest (0.218). Similar patterns of grouping were observed with a distance-based dendrogram developed using PowerMarker and model-based clustering with Structure. Three clusters with some admixtures were identified by model-based clustering. These newly developed SSR markers will be useful for further studies of chrysanthemums, such as taxonomy and marker-assisted selection breeding.


Asunto(s)
Chrysanthemum/clasificación , Chrysanthemum/genética , ADN de Plantas , Repeticiones de Microsatélite , Filogenia , Alelos , Cruzamiento , Análisis por Conglomerados , Frecuencia de los Genes , Genética de Población , Genotipo , Polimorfismo Genético , República de Corea
18.
Genet Mol Res ; 12(4): 4567-74, 2013 Oct 15.
Artículo en Inglés | MEDLINE | ID: mdl-24222232

RESUMEN

The runt-related transcription factor 2 gene (RUNX2), which is also known as CBFA1, is a master regulatory gene in bone formation. Mutations in RUNX2 have been identified in cleidocranial dysplasia (CCD) patients. CCD is a rare autosomal dominant skeletal dysplasia that is characterized by delayed closure of cranial sutures, aplastic or hypoplastic clavicle formation, short stature, and dental anomalies, including malocclusion, supernumerary teeth, and delayed eruption of permanent teeth. In this study, we recruited three de novo CCD families and performed mutational analysis of the RUNX2 gene as a candidate gene approach. The mutational study revealed three disease-causing mutations: a missense mutation (c.674G>A, p.Arg225Gln), a frameshift mutation (c.1119delC, p.Arg374Glyfs*), and a nonsense mutation (c.1171C>T, p.Arg391*). Clinical examination revealed a unique dental phenotype (no typical supernumerary teeth, but duplication of anterior teeth) in one patient. We believe that this finding will broaden the understanding of the mechanism of supernumerary teeth formation and CCD-related phenotypes.


Asunto(s)
Displasia Cleidocraneal/genética , Subunidad alfa 1 del Factor de Unión al Sitio Principal/genética , Adolescente , Secuencia de Bases , Niño , Displasia Cleidocraneal/diagnóstico por imagen , Codón sin Sentido , Análisis Mutacional de ADN , Femenino , Mutación del Sistema de Lectura , Estudios de Asociación Genética , Humanos , Maxilares/diagnóstico por imagen , Masculino , Mutación Missense , Radiografía , Anomalías Dentarias/diagnóstico por imagen , Anomalías Dentarias/genética
19.
Med Hypotheses ; 80(6): 701-5, 2013 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23490203

RESUMEN

Sleep is important for maintenance of skeletal muscle health. Sleep debt can induce muscle atrophy by increasing glucocorticoids and decreasing testosterone, growth hormone and insulin-like growth factor-I. These hormonal alterations result in a highly proteolytic environment characterized by decreased protein synthesis and increased degradation. Given that sleep deprivation is increasingly prevalent in modern society, strategies to minimize or reverse its adverse effects need to be investigated. Resistance exercise has been suggested as an intervention that would benefit the muscle health. The practice of this type of exercise can increase the concentration of testosterone, growth hormone and insulin-like growth factor I and stimulate the protein synthesis through a key signaling molecule, mammalian target of rapamycin. Thus, we hypothesized that resistance exercise is an important non-pharmacological strategy to counteract deleterious effects of sleep debt on skeletal muscle.


Asunto(s)
Atrofia Muscular/etiología , Atrofia Muscular/prevención & control , Entrenamiento de Fuerza/métodos , Privación de Sueño/complicaciones , Humanos , Modelos Biológicos , Biosíntesis de Proteínas/fisiología , Proteolisis
20.
Genet Mol Res ; 12(2): 2024-31, 2013 Jun 20.
Artículo en Inglés | MEDLINE | ID: mdl-23408445

RESUMEN

We conducted a hospital-based case-control study in Korea to investigate whether apoptosis- and cell cycle control-related genes are associated with childhood brain tumor. Incident brain tumor cases (N = 70) and non-cancer controls (N = 140), frequency-matched by age and gender, were selected from 3 teaching hospitals in Seoul between 2003 and 2006. Tag single nucleotide polymorphisms (SNPs) (N = 297) in 30 genes related to apoptosis and cell cycle control were selected using a pairwise linkage-disequilibrium-based algorithm. Five tag SNPs in 2 genes (AICDA and CASP14) remained significant after adjusted multiple tests. The most significant association with childhood brain tumor risk was for IVS1-401G>C in the AICDA gene [odds ratio (OR) = 2.8; 95% confidence interval (95%CI) = 1.25-6.46]; the polymorphism *9276A>C of CASP14 was associated with decreased brain tumor risk (OR = 0.4; 95%CI = 0.19-0.95). We concluded that genetic polymorphisms in AICDA and CASP14 are associated with risk for brain tumor in Korean children.


Asunto(s)
Neoplasias Encefálicas/genética , Caspasas/genética , Citidina Desaminasa/genética , Estudios de Asociación Genética , Predisposición Genética a la Enfermedad , Polimorfismo de Nucleótido Simple/genética , Apoptosis/genética , Ciclo Celular/genética , Niño , Preescolar , Femenino , Humanos , Masculino , República de Corea , Factores de Riesgo
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