Genome sequences of Colletotrichum eleusines and C. echinochloae: two pathogens from Poaceae weeds.

We present two whole-genome sequences of Colletotrichum strains which were isolated from Eleusine indica and Echinochloa crus-galli using Nanopore and Illumina technologies, as part of screening for potential mycoherbicide. The genome sequences will provide important genetic information and will be useful for further research into secondary metabolites of Colletotrichum.

Colletotrichum echinochloae: A Potential Bioherbicide Agent for Control of Barnyardgrass (Echinochloa crus-galli (L.) Beauv.).

Barnyardgrass (Echinochloa crus-galli (L.) Beauv.) is one of the most troublesome weeds in transplanted and direct-seeded rice worldwide. To develop a strategy for the biocontrol of barnyardgrass, fungal isolates were recovered from barnyardgrass plants that exhibited signs of necrosis and wilt. An isolate B-48 with a high level of pathogenicity to barnyardgrass was identified after pathogenicity tests. From cultural and DNA sequence data, this strain was identified as Colletotrichum echinochloae. The inoculation of the barnyardgrass plant with C. echinochloae caused a significant reduction in fresh weight. The isolate B-48 was highly pathogenic to barnyardgrass at the three- to four-leaf stages. When inoculated at a concentration of 1 × 107 spores/mL, barnyardgrass could achieve a reduction in fresh weight of more than 50%. This strain was safe for rice and most plant species. The results of this study indicated that this strain could be a potential mycoherbicide for barnyardgrass control in paddy fields in the future.

A new technique for stain-marking of seeds with safranine to track seed dispersal and seed bank dynamics.

Accurate tracking of seed dispersal is critical for understanding gene flow and seed bank dynamics, and for predicting population distributions and spread. Available seed-tracking techniques are limited due to environmental and safety issues or requirements for expensive and specialized equipment. Furthermore, few techniques can be applied to studies of water-dispersed seeds. Here we introduce a new seed-tracking method using safranine to stain seeds/fruits by immersing in (ex situ) or spraying with (in situ) staining solution. The hue difference value between pre- and post-stained seeds/fruits was compared using the HSV color model to assess the effect of staining. A total of 181 kinds of seeds/fruits out of 233 tested species of farmland weeds, invasive alien herbaceous plants and trees could be effectively stained magenta to red in hue (320-360°) from generally yellowish appearance (30-70°), in which the other 39 ineffectively-stained species were distinguishable by the naked eye from pre-stained seeds. The most effectively stained seeds/fruits were those with fluffy pericarps, episperm, or appendages. Safranine staining was not found to affect seed weight or germination ability regardless of whether seeds were stained ex situ or in situ. For 44 of 48 buried species, the magenta color of stained seeds clearly remained recognizable for more than 5 months after seeds were buried in soil. Tracking experiments using four species (Beckmannia syzigachne, Oryza sativa f. spontanea, Solidago Canadensis, and Acer buergerianum), representing two noxious agricultural weeds, an alien invasive plant, and a tree, respectively, showed that the safranine staining technique can be widely applied for studying plant seed dispersal. Identifying and counting the stained seeds/fruits can be executed by specially complied Python-based program, based on OpenCV library for image processing and Numpy for data handling. From the above results, we conclude that staining with safranine is a cheap, reliable, easily recognized, automatically counted, persistent, environmentally safe, and user-friendly tracking-seed method. This technique may be widely applied to staining most of the seed plant species and the study of seed dispersal in arable land and in disturbed and natural terrestrial or hydrophytic ecological systems.

Microstructure determines floating ability of weed seeds.

BACKGROUND: Weed seeds in rice-wheat continuous cropping fields spread via flowing water during irrigation of the rice crop. However, the ability of their adaptation to water dispersal and their structural mechanisms remain unclear. One hundred and ten species of weed seeds from 35 families were selected for this study. Seed slices were made through freeze sectioning to observe and assess the proportions of parenchyma, aerenchyma and lignified tissue. Microstructure and morphological traits, such as relative size and appendages were integrated into an analysis. RESULTS: Multivariate statistical analysis showed that floating time was significantly positively correlated with the shape, aerenchyma and parenchyma of the weed seeds and negatively with lignified tissue. Cluster analysis divided all the tested seeds into four categories. The first category was super floating weeds, which had a large proportion of parenchyma or air chamber and floated on water surfaces for > 400 h, including 16 species; the second category was strong floating weeds, which had a flat shape, parenchyma or air chamber structures and floated for 120 to 400 h, including 17 species; the third category was floating weeds, which were usually dense in structure with a floating time < 120 h, including 78 species; the fourth category showed no floating ability with a large size and mass, and dense structures including seven species. CONCLUSION: Most weeds had floating ability, which was closely related to the adaptability of their anatomical structures. This study takes an insight into understanding ecological adaptation of weeds and the sustainable ecological weed control through removing floating weed seeds.

Weed seed bank dynamics responses to long-term chemical control in a rice-wheat cropping system.

BACKGROUND: It remains an open question if the long-term application of single chemical herbicides would inevitably lead to increased weed populations and result in out-of-control weeds. The annual dynamics of weed seed bank responses to different weeding measures (chemical herbicide, hand weeding and no weeding) in rice-wheat cropping systems were compared to observe the succession of weed communities under different weed selection pressures for 17 years. RESULTS: In unweeded rice-wheat cropping plots, the initially dominant broadleaf weeds were overtaken by grasses and eventually by sedges, while in plots subjected to chemical herbicide or hand weeding, broadleaf weeds remained dominant followed by grasses. The rice-wheat cropping system favoured the spread of paddy weed species; weeding had little effect on the composition of the dominant rice weeds but greatly influenced that of wheat weeds. Total seed density tended to decrease in both weeded and unweeded plots, but the species density and composition of the seed banks differed among plots treated differently. Weeding slightly increased weed species diversity and decreased weed community evenness and dominance in the first several years, but this scenario could have negative consequences in the long term; however, without weeding, stronger interspecific competition led to a decrease in weed species diversity whereas weed community evenness and dominance increased. CONCLUSION: Long-term and repeated application of pre-emergence chemical herbicides and hand weeding had similar effects on the weed community dynamics, indicating that exclusive application of pre-emergence herbicide could maintain the weed community at a durable relatively low infestation level. © 2019 Society of Chemical Industry.

Host Range of Herpetogramma basalis (Lepidoptera: Crambidae), a Biological Control Agent for the Invasive Weed Alternanthera philoxeroides (Centrospermae: Amaranthaceae) in China.

Alternanthera philoxeroides (Mart.) Griseb. is an invasive herbaceous amphibious weed species in China. A pyralid moth Herpetogramma basalis (Walker) was discovered feeding on A. philoxeroides through field surveys and may be a potentially useful biocontrol agent. To determine the host range of H. basalis and evaluate its potential to control A. philoxeroides, no-choice and multiple-choice tests were conducted. Herpetogramma basalis fed on target weeds and 29 nontarget plant species. In addition to the target weed A. philoxeroides, H. basalis developed to adult on eight other nontarget species. Herpetogramma basalis survived to adulthood successfully on A. philoxeroides and less successfully on several other Amaranthaceae species. In multiple-choice studies, H. basalis showed a strong oviposition preference for A. philoxeroides over Amaranthus tricolor L. (Centrospermae: Amaranthaceae). Amaranthus tricolor was the only crop plant that supported the complete development of H. basalis. We cautiously recommend H. basalis for the biological control of A. philoxeroides in China.

Compound feature selection and parameter optimization of ELM for fault diagnosis of rolling element bearings.

This paper proposes a hybrid system named as HGSA-ELM for fault diagnosis of rolling element bearings, in which real-valued gravitational search algorithm (RGSA) is employed to optimize the input weights and bias of ELM, and the binary-valued of GSA (BGSA) is used to select important features from a compound feature set. Three types fault features, namely time and frequency features, energy features and singular value features, are extracted to compose the compound feature set by applying ensemble empirical mode decomposition (EEMD). For fault diagnosis of a typical rolling element bearing system with 56 working condition, comparative experiments were designed to evaluate the proposed method. And results show that HGSA-ELM achieves significant high classification accuracy compared with its original version and methods in literatures.

Impact of fertilizing pattern on the biodiversity of a weed community and wheat growth.

Weeding and fertilization are important farming practices. Integrated weed management should protect or improve the biodiversity of farmland weed communities for a better ecological environment with not only increased crop yield, but also reduced use of herbicides. This study hypothesized that appropriate fertilization would benefit both crop growth and the biodiversity of farmland weed communities. To study the effects of different fertilizing patterns on the biodiversity of a farmland weed community and their adaptive mechanisms, indices of species diversity and responses of weed species and wheat were investigated in a 17-year field trial with a winter wheat-soybean rotation. This long term field trial includes six fertilizing treatments with different N, P and K application rates. The results indicated that wheat and the four prevalent weed species (Galium aparine, Vicia sativa, Veronica persica and Geranium carolinianum) showed different responses to fertilizer treatment in terms of density, plant height, shoot biomass, and nutrient accumulations. Each individual weed population exhibited its own adaptive mechanisms, such as increased internode length for growth advantages and increased light interception. The PK treatment had higher density, shoot biomass, Shannon-Wiener and Pielou Indices of weed community than N plus P fertilizer treatments. The N1/2PK treatment showed the same weed species number as the PK treatment. It also showed higher Shannon-Wiener and Pielou Indices of the weed community, although it had a lower wheat yield than the NPK treatment. The negative effects of the N1/2PK treatment on wheat yield could be balanced by the simultaneous positive effects on weed communities, which are intermediate in terms of the effects on wheat and weeds.

A projection-based image registration algorithm and its application.

Proposed is a projection-based image registration technique where, by rearranging the projections of characteristic images, the image registration is implemented with two independent steps - rotation and translation, to perform the two-dimensional or three-dimensional rigid-body image registration addressing the head motion problem in functional magnetic resonance imaging (fMRI). For a 2D problem, the approach is based on a one-dimensional projection of a segmented two-dimensional characteristic image, in which the translation and rotation parameters are obtained with a one-dimensional cross-correlation-based estimator. This is then used to compute the cross-correlation between the projection of an image and a registration table that is created by rearranged projections of a selected two-dimensional image with various rotation angles. In this approach, the translation registration table may be created by rearranged projections of sub-voxel level two-dimensional images with various sub-voxel level parameters, and so it may be applied into a sub-voxel registration. Such an approach replaced the general multi-dimensional optimization procedure with a linear projection calculation and a finite cross-correlation with a registration table, thus the amount of computation is considerably reduced. The performance of this method was confirmed by simulation study different SNRs and applications to 2D and 3D actual functional MRI images.