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1.
Angew Chem Int Ed Engl ; : e202401448, 2024 Mar 26.
Artículo en Inglés | MEDLINE | ID: mdl-38530747

RESUMEN

Photogenerated radicals are an indispensable member of the state-of-the-art photochromic material family, as they can effectively modulate the photoluminescence and photothermal conversion performance of radical-induced photochromic complexes. Herein, two novel radical-induced photochromic metal‒organic frameworks (MOFs), [Ag(TEPE)](AC)⋅7/4H2O⋅5/4EtOH (1) and [Ag(TEPE)](NC)⋅3H2O⋅EtOH (2), are reported. Distinctly different topological networks can be obtained by judiciously introducing alternative π-conjugated anionic guests, including a new topological structure (named as sfm) first reported in this work, describing as 4,4,4,4-c net. EPR data and UV-Vis spectra prove the radical-induced photochromic mechanism. Dynamic photochromism exhibits tunability in a wide CIE color space, with a linear segment from yellow to red for 1, while a curved coordinate line for 2, resulting in colorful emission from blue to orange. Moreover, photogenerated TEPE* radicals effectively activate the near-infrared (NIR) photothermal conversion effect of MOFs. Under 1 W cm-2 808 nm laser irradiation, the surface temperatures of photoproducts 1* and 2* can reach ~160 ℃ and ~120 ℃, respectively, with competitive NIR photothermal conversion efficiencies η = 51.8% (1*) and 36.2% (2*). This work develops a feasible electrostatic compensation strategy to accurately introduce photoactive anionic guests into MOFs to construct multifunctional radical-induced photothermal conversion materials with tunable photoluminescence behavior.

2.
Chem Sci ; 15(5): 1692-1699, 2024 Jan 31.
Artículo en Inglés | MEDLINE | ID: mdl-38303953

RESUMEN

On account of the scarcity of molecules with a satisfactory second near-infrared (NIR-II) response, the design of high-performance organic NIR photothermal materials has been limited. Herein, we investigate a cocrystal incorporating tetrathiafulvalene (TTF) and tetrachloroperylene dianhydride (TCPDA) components. A stable radical was generated through charge transfer from TTF to TCPDA, which exhibits strong and wide-ranging NIR-II absorption. The metal-free TTF-TCPDA cocrystal in this research shows high photothermal conversion capability under 1064 nm laser irradiation and clear photothermal imaging. The remarkable conversion ability-which is a result of twisted components in the cocrystal-has been demonstrated by analyses of single crystal X-ray diffraction, photoluminescence and femtosecond transient absorption spectroscopy as well as theoretical calculations. We have discovered that space charge separation and the ordered lattice in the TTF-TCPDA cocrystal suppress the radiative decay, while simultaneously strong intermolecular charge transfer enhances the non-radiative decay. The twisted TCPDA component induces rapid charge recombination, while the distorted configuration in TTF-TCPDA favors an internal non-radiative pathway. This research has provided a comprehensive understanding of the photothermal conversion mechanism and opened a new way for the design of advanced organic NIR-II photothermal materials.

3.
Inorg Chem ; 62(42): 17052-17056, 2023 Oct 23.
Artículo en Inglés | MEDLINE | ID: mdl-37815023

RESUMEN

Designing and innovating organic structure-directing agents is the key to synthesizing novel molecular sieve structures. Herein, we design a novel carbazolyl-modified template and further synthesize a two-dimensional layered aluminophosphate with [C17H21N2]3[Al3(PO4)4]·5H2O (denoted as ZHKU-2). ZHKU-2 is composed of AA-stacked [Al3P4O16]3- layers constructed from alternating AlO4 and PO3(=O) tetrahedrons to form a 4.6.8 network featured by capped six-ring secondary building units. Carbazolyl-templated ZHKU-2 exhibits strong purple fluorescence with a high quantum yield of 25.98%. This work expands aluminophosphate materials of the [Al3P4O16]3- family and provides a view for synthesizing new molecular sieves by exploring the organic luminescence structure-directing agents.

4.
Inorg Chem ; 62(3): 1075-1085, 2023 Jan 23.
Artículo en Inglés | MEDLINE | ID: mdl-36625763

RESUMEN

Herein, hexaazamacrocyclic ligand LN6 was employed to construct a series of photochromic rare-earth complexes, [Ln(LN6)(NO3)2](BPh4) [1-Ln, Ln = Dy, Tb, Eu, Gd, Y; LN6 = (3E,5E,10E,12E)-3,6,10,13-tetraaza-1,8(2,6)-dipyridinacyclotetradecaphane-3,5,10,12-tetraene]. The behavior of photogenerated radicals of hexaazamacrocyclic ligands was revealed for the first time. Upon 365 nm light irradiation, complexes 1-Ln exhibit photochromic behavior induced by photogenerated radicals according to EPR and UV-vis analyses. Static and dynamic magnetic studies of 1-Dy and irradiated product 1-Dy* indicate weak ferromagnetic interactions among DyIII ions and photogenerated LN6 radicals, as well as slow magnetization relaxation behavior under a 2 kOe applied field. Further fitting analyses show that the magnetization relaxation in 1-Dy* is markedly different from 1-Dy. Time-dependent fluorescence measurements reveal the characteristic luminescence quenching dynamics of lanthanide in the photochromic process. Especially for irradiated product 1-Eu*, the luminescence is almost completely quenched within 5 min with a quenching efficiency of 98.4%. The results reported here provide a prospect for the design of radical-induced photochromic lanthanide single-molecule magnets and will promote the further development of multiresponsive photomagnetic materials.


Asunto(s)
Elementos de la Serie de los Lantanoides , Luminiscencia , Magnetismo , Imanes , Fluorescencia , Ligandos
7.
J Biomed Res ; 2019 Apr 08.
Artículo en Inglés | MEDLINE | ID: mdl-30956232

RESUMEN

Contrary to freezing preservation and formalin embalming, Thiel embalmed cadaver presents soft texture and color very close to that of living organism, and many applications based on Thiel embalmed cadavers have been reported. However, Thiel embalmed cadavers cannot be used as reliable evaluation model for radiofrequency ablation (RFA) due to dramatic changes of electrical conductivity in the embalmed tissue. To address this issue, we investigated various modifications of the original Thiel embalming solution. By altering the chemicals' species and concentration we figured out a formula that can greatly reduce the embalming fluid's electrical conductivity without significantly compromising the 18-day embalmed kidney samples' suppleness and color. We also investigated a two-stage embalming technique by first submerging the kidney sample into original Thiel's tank fluid for 28 days, then the sample was withdrawn from the tank fluid and placed into modified dilution fluids for additional two weeks. Stiffening and discoloration occurred in these diluted samples implying the reversibility of Thiel-embalmed tissues' suppleness and color with the removal of the strong electrolytes. This study presents a modified embalming method which could be used for RFA evaluation and also helps our understanding of the mechanism of embalmment process.

8.
Exp Dermatol ; 27(11): 1254-1260, 2018 11.
Artículo en Inglés | MEDLINE | ID: mdl-30144329

RESUMEN

Forkhead box-O1 (FoxO1) is a key nutrient- and growth factor-dependent regulator of metabolism, but its functional role in human primary keratinocytes (HPKs) is less known. To investigate the role of FoxO1 in HPKs and effect of insulin-like growth factor 1 (IGF-1) and isotretinoin on FoxO1 expression, HPKs were treated with 1.2 mmol/L calcium chloride, 1-20 ng/mL IGF-1 and 0.1-10 µmol/L isotretinoin. Recombinant adenovirus expressing FoxO1 or FKHR shRNA lentivirus transfection was introduced to upregulate or silence FoxO1 expression. Epidermal FoxO1 immunostaining was lower in acne lesion than in normal skin. FoxO1 overexpression induced involucrin expression, G2/M arrest and apoptosis but suppressed proliferation, while FoxO1 silencing decreased involucrin expression but increased proliferation, S phase and viable cells in HPKs. IGF-1 downregulated FoxO1 and involucrin but upregulated p-Akt expression in HPKs, which was blocked by pretreatment with LY294002. Isotretinoin enhanced FoxO1, p53 and p21 but inhibited p-FoxO1 and involucrin expression in HPKs. These results demonstrate that FoxO1 promotes differentiation and apoptosis in HPKs. IGF-1 may reduce keratinocyte differentiation through PI3K/Akt/FoxO1 pathway, while isotretinoin can reinforce FoxO1 expression. FoxO1 may be involved in acne pathogenesis and could serve as a potential therapeutic target.


Asunto(s)
Apoptosis/genética , Puntos de Control del Ciclo Celular/genética , Diferenciación Celular/genética , Proteína Forkhead Box O1/genética , Queratinocitos/fisiología , Acné Vulgar/metabolismo , Diferenciación Celular/efectos de los fármacos , Proliferación Celular/genética , Supervivencia Celular/genética , Células Cultivadas , Cromonas/farmacología , Fármacos Dermatológicos/farmacología , Inhibidores Enzimáticos/farmacología , Proteína Forkhead Box O1/metabolismo , Expresión Génica/efectos de los fármacos , Silenciador del Gen , Humanos , Factor I del Crecimiento Similar a la Insulina/farmacología , Isotretinoína/farmacología , Morfolinas/farmacología , Fosforilación , Cultivo Primario de Células , Precursores de Proteínas/genética , Precursores de Proteínas/metabolismo , Proteínas Proto-Oncogénicas c-akt/metabolismo , Transducción de Señal/efectos de los fármacos , Transfección , Proteína p53 Supresora de Tumor/metabolismo , Regulación hacia Arriba
9.
Biomed Res Int ; 2018: 7174561, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29850553

RESUMEN

Sebocyte differentiation is a continuous process, but its potential molecular mechanism remains unclear. We aimed to establish a novel sebocyte differentiation model using human primary sebocytes and to identify the expression profiles of differentiation-associated proteins. Primary human sebocytes were cultured on Sebomed medium supplemented with 2% serum for 7 days. Flow cytometry showed that S phase cells were decreased time-dependently, while G1 and subG1 (apoptosis) phase cells increased under serum starvation. Transmission electron microscopy and Oil Red O staining revealed a gradual increase of intracellular lipid accumulation. Expression of proliferation marker was diminished, while expression of differentiation, apoptosis, and lipogenic markers elevated gradually during 7-day culture. iTRAQ analysis identified 3582 expressed proteins in this differentiation model. Compared with day 0, number of differentially expressed proteins was 132, 54, 321, and 96 at days 1, 3, 5, and 7, respectively. Two overexpressed proteins (S100 calcium binding protein P and ferredoxin reductase) and 2 downexpressed proteins (adenosine deaminase and keratin 10) were further confirmed by Western blot and immunohistochemistry.


Asunto(s)
Diferenciación Celular , Células Epiteliales/citología , Modelos Biológicos , Proteoma/metabolismo , Proteómica/métodos , Sebo/citología , Acné Vulgar/patología , Apoptosis , Biomarcadores/metabolismo , Proliferación Celular , Células Cultivadas , Humanos , Lipogénesis , Reproducibilidad de los Resultados , Piel/patología
10.
J Dermatol Sci ; 85(1): 44-50, 2017 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-27771230

RESUMEN

BACKGROUND: The transcription factor Sox9 is pivotal in the morphogenesis of hair follicles, but its role in sebocytes is poorly understood. OBJECTIVE: We investigated the effect of Sox9 on human sebocyte proliferation, differentiation and lipogenesis. METHODS: Sox9 expression was detected by immunohistochemistry in normal skin and acne lesion. Primary cultured human sebocytes were transfected with adenovirus expressing GFP-Sox9 or Sox9 microRNA. Sox9 and peroxisome proliferator-activated receptor (PPAR)γ expression in sebocytes was detected by quantitative real-time PCR, Western blot and immunocytofluorescence; cell proliferation was measured by MTS and [3H]-thymidine incorporation assays; cell cycle distribution and apoptosis were evaluated by propidium iodide staining-based flow cytometry; and intracellular lipid levels were assessed by Oil Red O stain. RESULTS: Sox9 immunostaining was increased in mature sebocytes of acne lesion compared with normal skin. Expression of Sox9 mRNA and protein and PPARγ protein was elevated with cell confluent levels in sebocytes. Sox9 overexpression enhanced proliferation, differentiation, proportion of S and G2/M cells, lipogenesis and PPARγ expression in sebocytes, while Sox9 silencing caused inhibition of differentiation, lipogenesis and PPARγ expression, and increase of G1 and sub-G1 (apoptotic) cell fraction. The suppression of Sox9 knockdown on sebocyte growth was observed using [3H]-thymidine incorporation but not MTS assay. CONCLUSION: These results demonstrate that Sox9 can reinforce sebocyte proliferation, differentiation and lipogenesis. The G1/S transition arrest and apoptotic induction might contribute to inhibitory effect of Sox9 silencing on sebocyte proliferation.


Asunto(s)
Acné Vulgar/metabolismo , Diferenciación Celular , Proliferación Celular , Lipogénesis , Factor de Transcripción SOX9/metabolismo , Glándulas Sebáceas/citología , Acné Vulgar/patología , Apoptosis , Células Epiteliales/metabolismo , Técnica del Anticuerpo Fluorescente , Fase G1 , Humanos , Receptores Activados del Proliferador del Peroxisoma , Cultivo Primario de Células , Interferencia de ARN , Reacción en Cadena en Tiempo Real de la Polimerasa , Factor de Transcripción SOX9/genética , Cuero Cabelludo/citología
11.
Oncotarget ; 7(18): 25742-54, 2016 May 03.
Artículo en Inglés | MEDLINE | ID: mdl-27013588

RESUMEN

Hepatic metastasis is the major cause of mortality in colorectal cancer (CRC) patients. Using proteomic analysis, we found sciellin (SCEL) to be specifically expressed in hepatic metastatic CRC cell lines. SCEL knockdown increased CRC cell migration and invasion, while overexpression had the opposite effect. SCEL knockdown also caused cancer cells to form more invasive structures within 3D cultures, increased the mesenchymal marker vimentin, and attenuated the epithelial marker E-cadherin. SCEL increased WNT signaling by activating ß-catenin and its downstream target c-myc, and activated mesenchymal-to-epithelial transition (MET) through a SCEL-ß-catenin-E-cadherin axis. SCEL showed higher expression in late stage primary CRC than in its hepatic metastatic counterpart. SCEL expression is dynamically modulated by TGF-ß1 and hypoxia, revealing a plastic MET mechanism for tumor colonization. Intrahepatic injection in immunodeficient mice revealed that SCEL is necessary for metastatic CRC tumor growth in the liver. These results demonstrate that SCEL is a MET inducer dynamically regulated through the metastasis process. They suggest SCEL may be a useful therapeutic target for preventing or eliminating CRC hepatic metastasis.


Asunto(s)
Proteínas Portadoras/metabolismo , Transdiferenciación Celular/fisiología , Neoplasias Colorrectales/patología , Transición Epitelial-Mesenquimal , Neoplasias Hepáticas/secundario , Animales , Línea Celular Tumoral , Movimiento Celular/fisiología , Neoplasias Colorrectales/metabolismo , Xenoinjertos , Humanos , Neoplasias Hepáticas/metabolismo , Ratones , Ratones Endogámicos BALB C , Ratones Desnudos , Metástasis de la Neoplasia
12.
Environ Monit Assess ; 188(1): 12, 2016 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-26637189

RESUMEN

Mercury and polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs) accumulate in organisms through food webs and exert potentially toxic effects on aquatic organisms and humans. This study examined the levels of mercury and PCDD/Fs in organisms and sediment samples collected from a saltwater pond at the An-Shun site, a chloralkali factory that shut down in Tainan City, Taiwan. It was also a pentachlorophenol production plant. After the factories were shut down in the 1980s, mercury and PCDD/Fs contamination remained, posing severe health hazards. The correlation between PCDD/Fs congener accumulation patterns in distinct fish organs and the sediment was evaluated. Mercury and PCDD/Fs levels in all the fish samples exceeded food safety limits, and the concentrations of mercury and PCDD/Fs in each species were closely correlated (n = 12, Spearman's rank correlation [R] = 0.811, p < 0.01). The mercury concentrations were positively but non-significantly correlated with the weight (n = 11, R = 0.741, p < 0.01) and length (n = 11, R = 0.618, p < 0.05) of the species. The fish likely accumulated the contaminants through ingestion of other organisms or the sediment. However, after the pollutants entered a fish, they exhibited distinct accumulation patterns because of their differing chemical properties. Specifically, the mercury concentration was correlated with organism weight and length, whereas the PCDD/Fs concentration was associated with organ lipid content. The study results are valuable for assessing the health risks associated with ingesting mercury- and PCFF/F-contaminated seafood from the study site.


Asunto(s)
Organismos Acuáticos/metabolismo , Benzofuranos/análisis , Monitoreo del Ambiente , Mercurio/análisis , Dibenzodioxinas Policloradas/análogos & derivados , Contaminantes Químicos del Agua/análisis , Animales , Benzofuranos/metabolismo , Dibenzofuranos Policlorados , Peces , Mercurio/metabolismo , Dibenzodioxinas Policloradas/análisis , Dibenzodioxinas Policloradas/metabolismo , Agua de Mar/química , Taiwán , Contaminantes Químicos del Agua/metabolismo
13.
Artículo en Inglés | MEDLINE | ID: mdl-24690118

RESUMEN

OBJECTIVE: To determine the effects of subanesthetic ketamine in dogs with pyometra on C-reactive protein (CRP) concentrations following surgery. DESIGN: Prospective, nonconcealed, alternating allocation controlled trial. SETTING: Veterinary teaching hospital. ANIMALS: Sixteen dogs diagnosed with pyometra. INTERVENTIONS: The tentative diagnosis of canine pyometra was based on compatible history, physical examination findings, ultrasonographic findings, and hematological evaluation. Two different anesthesia and analgesic protocols with and without low-dose ketamine were used during and following ovariohysterectomy in 16 female dogs (n = 8 per group) that were diagnosed with naturally occurring pyometra. Dogs were sequentially allocated to treatment groups in an alternating fashion without concealment. Serum was collected before, 24, and 48 hours after surgery for CRP measurement. MEASUREMENTS AND MAIN RESULTS: Perioperative physical parameters in the 2 groups of dogs were similar. The serum concentrations of CRP in both groups were essentially the same before surgery, but significantly increased in the control group and decreased in ketamine group at 48 hours after surgery. CONCLUSIONS: Low-dose ketamine attenuated the postoperative concentration of serum CRP in dogs with pyometra compared with dogs that did not receive ketamine in the perioperative period. Further studies are warranted to determine the clinical implications of these findings.


Asunto(s)
Analgésicos/administración & dosificación , Proteína C-Reactiva/efectos de los fármacos , Enfermedades de los Perros/tratamiento farmacológico , Ketamina/administración & dosificación , Piómetra/veterinaria , Anestesia/veterinaria , Animales , Enfermedades de los Perros/sangre , Perros , Esquema de Medicación/veterinaria , Femenino , Histerectomía/veterinaria , Periodo Posoperatorio , Estudios Prospectivos , Piómetra/tratamiento farmacológico , Resultado del Tratamiento
14.
Environ Monit Assess ; 186(3): 1781-92, 2014 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-24242081

RESUMEN

The Tamsui River basin is located in Northern Taiwan and encompasses the most metropolitan city in Taiwan, Taipei City. The Taiwan Environmental Protection Administration (EPA) has established 38 water quality monitoring stations in the Tamsui River basin and performed regular river water quality monitoring for the past two decades. Because of the limited budget of the Taiwan EPA, adjusting the monitoring program while maintaining water quality data is critical. Multivariate analysis methods, such as cluster analysis (CA), factor analysis (FA), and discriminate analysis (DA), are useful tools for the statistically spatial assessment of surface water quality. This study integrated CA, FA, and DA to evaluate the spatial variance of water quality in the metropolitan city of Taipei. Performing CA involved categorizing monitoring stations into three groups: high-, moderate-, and low-pollution areas. In addition, this categorization of monitoring stations was in agreement with that of the assessment that involved using the simple river pollution index. Four latent factors that predominantly influence the river water quality of the Tamsui River basin are assessed using FA: anthropogenic pollution, the nitrification process, seawater intrusion, and geological and weathering processes. We plotted a spatial pattern using the four latent factor scores and identified ten redundant monitoring stations near each upstream station with the same score pattern. We extracted five significant parameters by using DA: total organic carbon, total phosphorus, As, Cu, and nitrate, with spatial variance to differentiate them from the polluted condition of the group obtained by using CA. Finally, this study suggests that the Taiwan EPA can adjust the surface water-monitoring program of the Tamsui River by reducing the monitoring stations to 28 and the measured chemical parameters to five to lower monitoring costs.


Asunto(s)
Monitoreo del Ambiente/métodos , Contaminantes Químicos del Agua/análisis , Contaminación Química del Agua/estadística & datos numéricos , Análisis por Conglomerados , Análisis Discriminante , Análisis Factorial , Análisis Multivariante , Análisis de Componente Principal , Ríos , Taiwán
15.
PLoS One ; 7(7): e40873, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22844415

RESUMEN

We have previously demonstrated that the meningococcal antigen Ag473 in the presence of Freund's adjuvant can elicit protective immune responses in mouse challenge model. In this study, we evaluated the structural requirement for the immunological activity and the possible signaling pathway of recombinant Ag473 antigen produced in E. coli. We found that lipidated Ag473 (L-Ag473) possesses an intrinsic adjuvant activity that could be attributed to its ability to activate dendritic cells and promote their maturation. In addition, we found that L-Ag473 can activate human monocytes and promote maturation of human monocyte-derived dendritic cells. These results provide an indirect support that L-Ag473 may also be immunogenic in human. Interestingly, the observed activity is dependent on the overall conformation of L-Ag473 because heating and proteinase K treatment can diminish and abolish the activity. Furthermore, our data suggest a species-differential TLR recognition of L-Ag473. Overall, these data suggest a new paradigm for the ligand-TLR interaction in addition to demonstrating the self-adjuvanting activity of the vaccine candidate L-Ag473.


Asunto(s)
Proteínas Bacterianas/química , Proteínas Bacterianas/inmunología , Inmunomodulación , Lípidos/química , Lipoproteínas/química , Lipoproteínas/inmunología , Secuencia de Aminoácidos , Animales , Proteínas Bacterianas/metabolismo , Células de la Médula Ósea/citología , Línea Celular , Quimiocinas/biosíntesis , Células Dendríticas/efectos de los fármacos , Células Dendríticas/inmunología , Células Dendríticas/metabolismo , Humanos , Lipoproteínas/metabolismo , Macrófagos/efectos de los fármacos , Macrófagos/inmunología , Macrófagos/metabolismo , Ratones , Datos de Secuencia Molecular , Conformación Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/inmunología , Proteínas Recombinantes/metabolismo , Transducción de Señal , Linfocitos T/efectos de los fármacos , Linfocitos T/inmunología , Linfocitos T/metabolismo , Receptor Toll-Like 4/metabolismo
16.
Nucleic Acids Res ; 39(14): e97, 2011 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-21602263

RESUMEN

Programmed -1 ribosomal frameshifting (-1 PRF) is a mechanism that directs elongating ribosomes to shift-reading frame by 1 base in the 5' direction that is utilized by many RNA viruses. Importantly, rates of -1 PRF are fine-tuned by viruses, including Retroviruses, Coronaviruses, Flavivriuses and in two endogenous viruses of the yeast Saccharomyces cerevisiae, to deliver the correct ratios of different viral proteins for efficient replication. Thus, -1 PRF presents a novel target for antiviral therapeutics. The underlying molecular mechanism of -1 PRF is conserved from yeast to mammals, enabling yeast to be used as a logical platform for high-throughput screens. Our understanding of the strengths and pitfalls of assays to monitor -1 PRF have evolved since the initial discovery of -1 PRF. These include controlling for the effects of drugs on protein expression and mRNA stability, as well as minimizing costs and the requirement for multiple processing steps. Here we describe the development of an automated yeast-based dual fluorescence assay of -1 PRF that provides a rapid, inexpensive automated pipeline to screen for compounds that alter rates of -1 PRF which will help to pave the way toward the discovery and development of novel antiviral therapeutics.


Asunto(s)
Fluorometría/métodos , Sistema de Lectura Ribosómico , Ensayos Analíticos de Alto Rendimiento , Colorantes Fluorescentes/análisis , Genes Reporteros , Luciferasas de Luciérnaga/análisis , Luciferasas de Luciérnaga/genética , Luciferasas de Renilla/análisis , Luciferasas de Renilla/genética , Levaduras/genética
17.
Nucleic Acids Res ; 39(1): 300-12, 2011 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-20823091

RESUMEN

Several important viruses including the human immunodeficiency virus type 1 (HIV-1) and the SARS-associated Coronavirus (SARS-CoV) employ programmed -1 ribosomal frameshifting (PRF) for their protein expression. Here, a kinetic framework is developed to describe -1 PRF. The model reveals three kinetic pathways to -1 PRF that yield two possible frameshift products: those incorporating zero frame encoded A-site tRNAs in the recoding site, and products incorporating -1 frame encoded A-site tRNAs. Using known kinetic rate constants, the individual contributions of different steps of the translation elongation cycle to -1 PRF and the ratio between two types of frameshift products were evaluated. A dual fluorescence reporter was employed in Escherichia coli to empirically test the model. Additionally, the study applied a novel mass spectrometry approach to quantify the ratios of the two frameshift products. A more detailed understanding of the mechanisms underlying -1 PRF may provide insight into developing antiviral therapeutics.


Asunto(s)
Sistema de Lectura Ribosómico , Modelos Genéticos , Extensión de la Cadena Peptídica de Translación , VIH-1/genética , Virus Linfotrópico T Tipo 1 Humano/genética , Cinética , Espectrometría de Masas , ARN de Transferencia/metabolismo , Ribosomas/metabolismo
18.
Nucleic Acids Res ; 37(21): 7302-11, 2009 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-19783813

RESUMEN

In +1 programmed ribosomal frameshifting (PRF), ribosomes skip one nucleotide toward the 3'-end during translation. Most of the genes known to demonstrate +1 PRF have been discovered by chance or by searching homologous genes. Here, a bioinformatic framework called FSscan is developed to perform a systematic search for potential +1 frameshift sites in the Escherichia coli genome. Based on a current state of the art understanding of the mechanism of +1 PRF, FSscan calculates scores for a 16-nt window along a gene sequence according to different effects of the stimulatory signals, and ribosome E-, P- and A-site interactions. FSscan successfully identified the +1 PRF site in prfB and predicted yehP, pepP, nuoE and cheA as +1 frameshift candidates in the E. coli genome. Empirical results demonstrated that potential +1 frameshift sequences identified promoted significant levels of +1 frameshifting in vivo. Mass spectrometry analysis confirmed the presence of the frameshifted proteins expressed from a yehP-egfp fusion construct. FSscan allows a genome-wide and systematic search for +1 frameshift sites in E. coli. The results have implications for bioinformatic identification of novel frameshift proteins, ribosomal frameshifting, coding sequence detection and the application of mass spectrometry on studying frameshift proteins.


Asunto(s)
Escherichia coli/genética , Sistema de Lectura Ribosómico , Programas Informáticos , Algoritmos , Secuencia de Aminoácidos , Secuencia de Bases , Secuencia Conservada , Proteínas de Escherichia coli/genética , Genes Bacterianos , Genoma Bacteriano , Datos de Secuencia Molecular
19.
Nucleic Acids Res ; 36(8): 2619-29, 2008 May.
Artículo en Inglés | MEDLINE | ID: mdl-18344525

RESUMEN

Programmed ribosomal frameshifting (PRF) is a process by which ribosomes produce two different polypeptides from the same mRNA. In this study, we propose three different kinetic models of +1 PRF, incorporating the effects of the ribosomal E-, P- and A-sites toward promoting efficient +1 frameshifting in Escherichia coli. Specifically, the timing of E-site tRNA dissociation is discussed within the context of the kinetic proofreading mechanism of aminoacylated tRNA (aa-tRNA) selection. Mathematical modeling using previously determined kinetic rate constants reveals that destabilization of deacylated tRNA in the E-site, rearrangement of peptidyl-tRNA in the P-site, and availability of cognate aa-tRNA corresponding to the A-site act synergistically to promote efficient +1 PRF. The effect of E-site codon:anticodon interactions on +1 PRF was also experimentally examined with a dual fluorescence reporter construct. The combination of predictive modeling and empirical testing allowed the rate constant for P-site tRNA slippage (k(s)) to be estimated as k(s) approximately 1.9 s(-1) for the release factor 2 (RF2) frameshifting sequence. These analyses suggest that P-site tRNA slippage is the driving force for +1 ribosomal frameshifting while the presence of a 'hungry codon' in the A-site and destabilization in the E-site further enhance +1 PRF in E. coli.


Asunto(s)
Sistema de Lectura Ribosómico , Modelos Genéticos , ARN de Transferencia/metabolismo , Ribosomas/metabolismo , Anticodón/química , Sitios de Unión , Codón/química , Escherichia coli/genética , Cinética , Aminoacil-ARN de Transferencia/metabolismo , Ribosomas/química
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