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1.
Nat Nanotechnol ; 18(8): 957-966, 2023 08.
Artículo en Inglés | MEDLINE | ID: mdl-37157020

RESUMEN

The varied transcriptomic response to nanoparticles has hampered the understanding of the mechanism of action. Here, by performing a meta-analysis of a large collection of transcriptomics data from various engineered nanoparticle exposure studies, we identify common patterns of gene regulation that impact the transcriptomic response. Analysis identifies deregulation of immune functions as a prominent response across different exposure studies. Looking at the promoter regions of these genes, a set of binding sites for zinc finger transcription factors C2H2, involved in cell stress responses, protein misfolding and chromatin remodelling and immunomodulation, is identified. The model can be used to explain the outcomes of mechanism of action and is observed across a range of species indicating this is a conserved part of the innate immune system.


Asunto(s)
Nanoestructuras , Dedos de Zinc , Dedos de Zinc/genética , Factores de Transcripción/genética , Factores de Transcripción/metabolismo , Perfilación de la Expresión Génica , Proteínas de Plantas
2.
Phys Rev Lett ; 114(11): 118301, 2015 Mar 20.
Artículo en Inglés | MEDLINE | ID: mdl-25839314

RESUMEN

We show that an electro-osmotic flow near the slippery hydrophobic surface depends strongly on the mobility of surface charges, which are balanced by counterions of the electrostatic diffuse layer. For a hydrophobic surface with immobile charges, the fluid transport is considerably amplified by the existence of a hydrodynamic slippage. In contrast, near the hydrophobic surface with mobile adsorbed charges, it is also controlled by an additional electric force, which increases the shear stress at the slipping interface. To account for this, we formulate electrohydrodynamic boundary conditions at the slipping interface, which should be applied to quantify electro-osmotic flows instead of hydrodynamic boundary conditions. Our theoretical predictions are fully supported by dissipative particle dynamics simulations with explicit charges. These results lead to a new interpretation of zeta potential of hydrophobic surfaces.


Asunto(s)
Interacciones Hidrofóbicas e Hidrofílicas , Modelos Químicos , Hidrodinámica , Presión Osmótica , Electricidad Estática , Propiedades de Superficie
3.
J Phys Condens Matter ; 24(6): 065102, 2012 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-22231780

RESUMEN

The structure of charge-stabilized colloidal dispersions has been studied through a one-component model using a Yukawa potential with density-dependent parameters examined with integral equation theory and Monte Carlo simulations. Partial thermodynamic consistency was guaranteed by considering the osmotic pressure of the dispersion from the approximate mean-field renormalized jellium and Poisson-Boltzmann cell models. The colloidal structures could be accurately described by the Ornstein-Zernike equation with the Rogers-Young closure by using the osmotic pressure from the renormalized jellium model. Although we explicitly show that the correct effective pair-potential obtained from the inverse Monte Carlo method deviates from the Yukawa shape, the osmotic pressure constraint allows us to have a good description of the colloidal structure without losing information on the system thermodynamics. Our findings are corroborated by primitive model simulations of salt-free colloidal dispersions.

4.
J Phys Condens Matter ; 23(18): 184114, 2011 May 11.
Artículo en Inglés | MEDLINE | ID: mdl-21508470

RESUMEN

Optical tweezers are experimental tools with extraordinary resolution in positioning (± 1 nm) a micron-sized colloid and in the measurement of forces (± 50 fN) acting on it-without any mechanical contact. This enables one to carry out a multitude of novel experiments in nano- and microfluidics, of which the following will be presented in this review: (i) forces within single pairs of colloids in media of varying concentration and valency of the surrounding ionic solution, (ii) measurements of the electrophoretic mobility of single colloids in different solvents (concentration, valency of the ionic solution and pH), (iii) similar experiments as in (i) with DNA-grafted colloids, (iv) the nonlinear response of single DNA-grafted colloids in shear flow and (v) the drag force on single colloids pulled through a polymer solution. The experiments will be described in detail and their analysis discussed.


Asunto(s)
Biofisica/métodos , Coloides/química , ADN/química , Pinzas Ópticas , Polímeros/química , Reología , Electrólitos , Concentración de Iones de Hidrógeno , Iones , Microscopía por Video/métodos , Distribución Normal
5.
Phys Rev Lett ; 100(17): 178304, 2008 May 02.
Artículo en Inglés | MEDLINE | ID: mdl-18518346

RESUMEN

We determine the structure of charge-stabilized colloidal suspensions at low ionic strength over an extended range of particle volume fractions using a combination of light and small angle neutron scattering experiments. The variation of the structure factor with concentration is analyzed within a one-component model of a colloidal suspension. We show that the observed structural behavior corresponds to a nonmonotonic density dependence of the colloid effective charge and the mean interparticle interaction energy. Our findings are corroborated by similar observations from primitive model computer simulations of salt-free colloidal suspensions.

6.
Phys Rev E Stat Nonlin Soft Matter Phys ; 74(5 Pt 1): 051408, 2006 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-17279910

RESUMEN

We study macroion correlation effects on the thermodynamics of highly charged colloidal suspensions using a mean-field theory and primitive model computer simulations. We suggest a simple way to include the macroion correlations into the mean-field theory as an extension of the renormalized jellium model of Trizac and Levin [Phys. Rev. E 69, 031403 (2004)]. The effective screening parameters extracted from our mean-field approach are then used in a one-component model with macroions interacting via a Yukawa-like potential to predict macroion distributions. We find that inclusion of macroion correlations leads to a weaker screening and hence smaller effective macroion charge and lower osmotic pressure of the colloidal dispersion as compared to other mean-field models. This result is supported by comparison to primitive model simulations and experiments for charged macroions in the low-salt regime, where the macroion correlations are expected to be significant.

7.
Eur Phys J E Soft Matter ; 13(2): 153-64, 2004 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-15052425

RESUMEN

We investigated the interactions between protein molecules in solution, in particular for low salt concentrations and thus strong electrostatic interactions where a treatment based on the second virial coefficient is not sufficient. Static and dynamic light scattering experiments on solutions containing the peptide human calcitonin (hCT) were combined with calculations based on the Ornstein-Zernike equation with the hypernetted chain (HNC) closure and computer simulations within the primitive electrolyte model. The simulation illustrates the distribution of proteins in solution and the formation of (transient) protein aggregates. It furthermore allows us to predict the physical stability of hCT solutions in dependence of ionic strength, pH and hCT concentration.


Asunto(s)
Péptidos/química , Unión Proteica , Calcitonina/química , Electrólitos , Humanos , Concentración de Iones de Hidrógeno , Luz , Modelos Moleculares , Modelos Teóricos , Método de Montecarlo , Conformación Proteica , Sales (Química)/farmacología , Dispersión de Radiación , Electricidad Estática , Factores de Tiempo
8.
Phys Rev E Stat Nonlin Soft Matter Phys ; 63(2 Pt 1): 020401, 2001 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-11308458

RESUMEN

Effective macroion-macroion potentials in solutions of macroions carrying 60 elementary charges and either monovalent or divalent counterions have been calculated at different concentrations by means of Monte Carlo simulations with a consequent inversion of radial distribution functions according to Lyubartsev and Laaksonen [Phys. Rev. E 52, 3730 (1995)]. With monovalent counterions, the effective potentials are essentially of a Yukawa type, whereas with divalent ones, an attractive region appears at short separation. A charge renormalization scheme invoking the cell model and the assumption of a Yukawa-type potential works favorably only in the case of monovalent counterions.


Asunto(s)
Electrólitos/química , Iones , Fenómenos Biofísicos , Biofisica , Método de Montecarlo
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