Unraveling the intramolecular cyclization mechanism of oxidized tryptophan in aqueous solution as a function of pH.

The aqueous intramolecular cyclization of 3a-hydroperoxitryptophan, Trp-OOH, (an intermediate in the photodynamic treatment of cancer) is studied at the PCM-MP2/aug-cc-pVDZ//PCM-B3LYP/aug-cc-pVDZ computational level with and without explicit water molecules. The three-cycle product may evolve to the metabolite N-formyl kynurenine in living beings or can be a building block in the formation of indole alkaloids in organic synthesis. When the pH is close to the isoelectric point of tryptophan, we have found two cyclization mechanisms, one passing along zwitterion intermediates, I-route (beginning with a proton transfer from the ammonium to the N-indole atom) and the other involving neutral isomers, C-route (starting with the attack of N-amino to C2-indole). At this pH, the discrete-continuum model with six explicit water molecules predicts a Gibbs energy barrier of 14.6 kcal mol(-1) for the I-route and of 11.6 kcal mol(-1) for the C-route. It is possible to experimentally tune the operating mechanism since in acidic environments only the I-route is available (Gibbs energy barrier of 8.4 kcal mol(-1)) whereas in basic media only the C-route can operate (Gibbs energy barrier of 6.7 kcal mol(-1)). These data explain the trend of Trp-OOH to easily decompose under basification.

Theoretical study of the oxidation of histidine by singlet oxygen.

Herein we present a theoretical study of the reaction of singlet oxygen with histidine performed both in the gas phase and in aqueous solution. The potential energy surface of the reactive system was explored at the B3LYP/cc-pVTZ level of theory and the electronic energies were refined by means of single-point CCSD(T)/cc-pVTZ(-f) calculations. Solvent effects were taken into account by using a solvent continuum model (COSMO) and by adding explicit water molecules. The results show that the first step in the reaction mechanism corresponds to a nearly symmetric Diels-Alder addition of the singlet oxygen molecule to the imidazole ring to yield an endoperoxide, in agreement with experimental evidence. The intermediate formed can evolve along two different reaction paths leading to two isomeric hydroperoxides and, eventually, to open-chain or internally cyclised oxidised products. Water plays a significant role in stabilising the reaction structures by solvation and by acting as a bifunctional catalyst in the elimination/addition reaction steps. Our results explain why substituents at the N1-imidazole ring can hamper the evolution of the initial endoperoxide and result in Gibbs energy barriers in solution similar to those experimentally measured and suggest a likely route to the formation of peptide aggregates during the oxidation of histidine by singlet molecular oxygen.