Deacylases-structure, function, and relationship to diseases.

Reversible S-acylation plays a pivotal role in various biological processes, modulating protein functions such as subcellular localization, protein stability/activity, and protein-protein interactions. These modifications are mediated by acyltransferases and deacylases, among which the most abundant modification is S-palmitoylation. Growing evidence has shown that this rivalrous pair of modifications, occurring in a reversible cycle, is essential for various biological functions. Aberrations in this process have been associated with various diseases, including cancer, neurological disorders, and immune diseases. This underscores the importance of studying enzymes involved in acylation and deacylation to gain further insights into disease pathogenesis and provide novel strategies for disease treatment. In this Review, we summarize our current understanding of the structure and physiological function of deacylases, highlighting their pivotal roles in pathology. Our aim is to provide insights for further clinical applications.

A Chinese named entity recognition model incorporating recurrent cell and information state recursion.

Chinese is characterized by high syntactic complexity, chaotic annotation granularity, and slow convergence. Joint learning models can effectively improve the accuracy of Chinese Named Entity Recognition (NER), but they focus too much on local feature information and reduce the ability of long sequence feature extraction. To address the limitations of long sequence feature extraction ability, we propose a Chinese NER model called Incorporating Recurrent Cell and Information State Recursion (IRCSR-NER). The model integrates recurrent cells and information state recursion to improve the recognition ability of long entity boundaries. To solve the problem that Chinese and English have different focuses in syntactic analysis. We use the syntactic dependency approach to add lexical relationship information to sentences represented at the word level. The IRCSR-NER is applied to sequence feature extraction to improve the model efficiency and long-text feature extraction ability. The model captures contextual long-distance dependent information while focusing on local feature information. We evaluated our proposed model using four public datasets and compared it with other mainstream models. Experimental results demonstrate that our model outperforms traditional and mainstream models.

Computer-Aided Diagnosis of Complications After Liver Transplantation Based on Transfer Learning.

Liver transplantation is one of the most effective treatments for acute liver failure, cirrhosis, and even liver cancer. The prediction of postoperative complications is of great significance for liver transplantation. However, the existing prediction methods based on traditional machine learning are often unavailable or unreliable due to the insufficient amount of real liver transplantation data. Therefore, we propose a new framework to increase the accuracy of computer-aided diagnosis of complications after liver transplantation with transfer learning, which can handle small-scale but high-dimensional data problems. Furthermore, since data samples are often high dimensional in the real world, capturing key features that influence postoperative complications can help make the correct diagnosis for patients. So, we also introduce the SHapley Additive exPlanation (SHAP) method into our framework for exploring the key features of postoperative complications. We used data obtained from 425 patients with 456 features in our experiments. Experimental results show that our approach outperforms all compared baseline methods in predicting postoperative complications. In our work, the average precision, the mean recall, and the mean F1 score reach 91.22%, 91.70%, and 91.18%, respectively.

Age Weakens the Other-Race Effect among Han Subjects in Recognizing Own- and Other-Ethnicity Faces.

The development and change in the other-race effect (ORE) in different age groups have always been a focus of researchers. Previous studies have mainly focused on the influence of maturity of life (from infancy to early adulthood) on the ORE, while few researchers have explored the ORE in older people. Therefore, this study used behavioral and eye movement techniques to explore the influence of age on the ORE and the visual scanning pattern of Han subjects recognizing own- and other-ethnicity faces. All participants were asked to complete a study-recognition task for faces, and the behavioral results showed that the ORE of elderly Han subjects was significantly lower than that of young Han subjects. The results of eye movement showed that there were significant differences in the visual scanning pattern of young subjects in recognizing the faces of individuals of their own ethnicity and other ethnicities, which were mainly reflected in the differences in looking at the nose and mouth, while the differences were reduced in the elderly subjects. The elderly subjects used similar scanning patterns to recognize the own- and other-ethnicity faces. This indicates that as age increases, the ORE of older people in recognizing faces of those from different ethnic groups becomes weaker, and elderly subjects have more similar visual scanning patterns in recognizing faces of their own and other ethnicities.

Nuclear magnetic resonance-based solvent system selection for counter-current chromatography separation of compounds present in the same high-performance liquid chromatography peak: Flavonoids in barley seedlings as an example.

Partition coefficient is a key parameter for counter-current chromatography separation. High-performance liquid chromatography (HPLC) is the most commonly used tool for the screening of partition coefficients. However, HPLC technology is not applicable to the compounds present in the same chromatographic peak. Nuclear magnetic resonance (NMR) technology could easily distinguish compounds according to their characteristic absorption even if they exist in the same HPLC peak. In this study, two flavonoids present in the same HPLC peak were successfully purified by counter-current chromatography with a solvent system screened by NMR to show the great potential of NMR technology in the screening of the partition coefficient of co-efflux compounds. Through NMR screening, an optimized ethyl acetate/n-buthanol/water (7:3:10, v/v/v) system was applied in this study. As a result, two flavonoids, including 4.8 mg of 3'-methoxyl-6'''-O-feruloylsaponarin and 9.8 mg of 6'''-O-feruloylsaponarin were separated from 15 mg of the mixture. There is only one methoxy group difference between the two flavonoids. This study provides a new strategy for the screening of counter-current chromatography solvent systems and broadens the application scope of counter-current chromatography.

Circular Photogalvanic Current in Ni-Doped Cd3As2 Films Epitaxied on GaAs(111)B Substrate.

Magnetic element doped Cd3As2 Dirac semimetal has attracted great attention for revealing the novel quantum phenomena and infrared opto-electronic applications. In this work, the circular photogalvanic effect (CPGE) was investigated at various temperatures for the Ni-doped Cd3As2 films which were grown on GaAs(111)B substrate by molecular beam epitaxy. The CPGE current generation was found to originate from the structural symmetry breaking induced by the lattice strain and magnetic doping in the Ni-doped Cd3As2 films, similar to that in the undoped ones. However, the CPGE current generated in the Ni-doped Cd3As2 films was approximately two orders of magnitude smaller than that in the undoped one under the same experimental conditions and exhibited a complex temperature variation. While the CPGE current in the undoped film showed a general increase with rising temperature. The greatly reduced CPGE current generation efficiency and its complex variation with temperature in the Ni-doped Cd3As2 films was discussed to result from the efficient capture of photo-generated carriers by the deep-level magnetic impurity bands and enhanced momentum relaxation caused by additional strong impurity scattering when magnetic dopants were introduced.

The prognostic nutritional index represents a novel inflammation-nutrition-based prognostic factor for nasopharyngeal carcinoma.

Purpose: This study explored the relationship between the prognostic nutritional index (PNI) and overall survival rate (OS) in patients with nasopharyngeal carcinoma (NPC), and established and validated an effective nomogram to predict clinical outcomes. Methods: This study included 618 patients newly diagnosed with locoregionally advanced NPC. They were divided into training and validation cohorts at a ratio of 2:1 based on random numbers. The primary endpoint of this study was OS, progression-free survival (PFS) was the second endpoint. A nomogram was drawn from the results of multivariate analyses. Harrell's concordance index (C-index), area under the receiver operator characteristic curve (AUC), and decision curve analysis (DCA) were used to evaluate the clinical usefulness and predictive ability of the nomogram and were compared to the current 8th edition of the International Union Against Cancer/American Joint Committee (UICC/AJCC) staging system. Results: The PNI cutoff value was 48.1. Univariate analysis revealed that age (p < 0.001), T stage (p < 0.001), N stage (p = 0.036), tumor stage (p < 0.001), PNI (p = 0.001), lymphocyte-neutrophil ratio (NLR, p = 0.002), and lactate dehydrogenase (LDH, p = 0.009) were significantly associated with OS, age (p = 0.001), T-stage (p < 0.001), tumor stage (p < 0.001), N-stage (p = 0.011), PNI (p = 0.003), NLR (p = 0.051), and LDH (p = 0.03) were significantly associated with PFS. Multivariate analysis showed that age (p < 0.001), T-stage (p < 0.001), N-stage(p = 0.02), LDH (p = 0.032), and PNI (p = 0.006) were significantly associated with OS, age (p = 0.004), T-stage (<0.001), N-stage (<0.001), PNI (p = 0.022) were significantly associated with PFS. The C-index of the nomogram was 0.702 (95% confidence interval [CI]: 0.653-0.751). The Akaike information criterion (AIC) value of the nomogram for OS was 1142.538. The C-index of the TNM staging system was 0.647 (95% CI, 0.594-0.70) and the AIC was 1163.698. The C-index, DCA, and AUC of the nomogram demonstrated its clinical value and higher overall net benefit compared to the 8th edition of the TNM staging system. Conclusion: The PNI represents a new inflammation-nutrition-based prognostic factor for patients with NPC. In the proposed nomogram, PNI and LDH were present, which led to a more accurate prognostic prediction than the current staging system for patients with NPC.

Evolutionary history of transformation from chronic lymphocytic leukemia to Richter syndrome.

Richter syndrome (RS) arising from chronic lymphocytic leukemia (CLL) exemplifies an aggressive malignancy that develops from an indolent neoplasm. To decipher the genetics underlying this transformation, we computationally deconvoluted admixtures of CLL and RS cells from 52 patients with RS, evaluating paired CLL-RS whole-exome sequencing data. We discovered RS-specific somatic driver mutations (including IRF2BP2, SRSF1, B2M, DNMT3A and CCND3), recurrent copy-number alterations beyond del(9p21)(CDKN2A/B), whole-genome duplication and chromothripsis, which were confirmed in 45 independent RS cases and in an external set of RS whole genomes. Through unsupervised clustering, clonally related RS was largely distinct from diffuse large B cell lymphoma. We distinguished pathways that were dysregulated in RS versus CLL, and detected clonal evolution of transformation at single-cell resolution, identifying intermediate cell states. Our study defines distinct molecular subtypes of RS and highlights cell-free DNA analysis as a potential tool for early diagnosis and monitoring.

Prosocial motivation can promote the time-based prospective memory of school-age children.

In real life, we are often motivated to plan things to be performed at specific times in the future. Some of these intended actions help other individuals, and thus involve time-based prospective memory (TBPM) under prosocial motivational conditions. Children's social development is very rapid, and they have relatively stable prosocial motivation during school age. Few studies have paid attention to this issue. This study focuses on three aspects of this issue: (1) the impact of prosocial motivation on the TBPM of school-age children, (2) whether there are sex differences in this effect, and, for the first time, (3) the processing mechanism by which prosocial motivation affects TBPM in school-age children in the framework of the motivation cognitive model. A total of 112 elementary school students, aged between 8 and 12, participated in the experiment, using a 2 (group: prosocial motivation, control) × 2 (sex: boy, girl) between-subjects design. The results showed that prosocial motivation can significantly reduce children's time difference of TBPM. However, we found no sex differences in the effect of prosocial motivation on TBPM in the above two indicators. With regard to the processing mechanism, we found that the prosocial motivation group paid more attention to external time information throughout the experiment. However, their internal attention and the effectiveness of attention did not improve. These results partially support the motivation cognitive model. Overall, this study found that prosocial motivation relies mainly on external attention to improve the TBPM performance of school-age children.

Expression and significance of serum KL-6 in patients with acute respiratory distress syndrome.

Background: Acute respiratory distress syndrome (ARDS) is a common and serious complication that occurs in the ICU. the determination of early ARDS indicators, along with timely treatment, can potentially diminish medical costs and reduce ARDS-related mortality. In this report, we evaluated the clinical significance of circulating Krebs von den Lungen-6 (KL-6) content among patients with intra- and extrapulmonary ARDS to investigate the clinical significance of serum KL-6. Methods: Patients who met the ARDS Berlin criteria and were hospitalized in the intensive care unit of the China-Japan Union Hospital of Jilin University between September 2021 and September 2022 were recruited for analysis. ARDS patients were divided into an intrapulmonary ARDS group (n=23) and an extrapulmonary ARDS group (n=27) based on their primary diagnosis. Baseline demographic data, including age and sex, and clinical data, including underlying diseases and mortality, of the two groups were collected and analyzed. Peripheral venous blood was collected on Day 0 (baseline), Day 1, Day 3, and Day 7. The kinetic levels of serum KL-6 were compared between patients who survived and those who died within one week of ARDS diagnosis. The prognosis, survival times, and status of patients within 28 days after diagnosis were evaluated. Results: In the intrapulmonary ARDS group, patients who died had significantly higher serum KL-6 levels in the seven days following diagnosis than those who survived. In contrast, in the extrapulmonary group, the difference in KL-6 values between patients who survived and died was only significant on the first day after diagnosis. The peak levels of serum KL-6 in the death group were significantly higher than those in the survival group for both intra- and extrapulmonary ARDS (P=0.0253). The optimal cutoff value of the serum KL-6 level was 1,452.3 U/mL in intrapulmonary ARDS patients and 828.2 U/mL in extrapulmonary patients. Serum KL-6 levels higher than the cutoff levels were confirmed to be a significant prognostic predictor of poor survival within 28 days of diagnosis in patients with intra- and extrapulmonary ARDS. Conclusions: The serum KL-6 level is potentially a good indicator for predicting the prognosis of patients with ARDS.

The left side of the face may be fixated on more often than the right side: visual lateralization in recognizing own- and other-race faces.

Studies have found that Westerners recognize own-race faces with left visual lateralization (from the viewer's perspective), but whether subjects recognize own- and other-race faces with similar degrees of left visual lateralization is unclear. In the present study, two experiments were conducted to clarify this issue. In Experiment 1, faces were divided into left and right sides to ascertain whether Chinese subjects scanned the left side of Chinese and Western faces more often than the right side. In Experiment 2, facial features were divided into six areas of interest along the midline of the face (specifically, the left and right eyes, sides of the nose, and sides of the mouth) to determine whether Chinese subjects scanned facial features on the left side of Chinese and Western faces more often than on the right side. The results of Experiment 1 showed that the fixation counts and scanning duration for the left side of the face were greater than those for the right side of the face, with no significant effect from the race of the face. The results of Experiment 2 showed that the fixation counts and scanning duration of the left eye and left side of the mouth were greater than those of the right eye and right side of the mouth, respectively, whereas no significant effect was found between the left and right sides of the nose for either Chinese or Western faces. The results indicate that Chinese subjects recognize own- and other-race faces with similar left visual lateralization, which is mainly reflected in scanning of the eyes and mouth.

The role of task demands in racial face encoding.

People more accurately remember faces of their own racial group compared to faces of other racial groups; this phenomenon is called the other-race effect. To date, numerous researchers have devoted themselves to exploring the reasons for this other-race effect, and they have posited several theoretical explanations. One integrated explanation is the categorization-individuation model, which addresses two primary ways (categorization and individuation) of racial face processing and emphasizes the emergence of these two ways during the encoding stage. Learning-recognition and racial categorization tasks are two classical tasks used to explore racial face processing. Event-related potentials can facilitate investigation of the encoding differences of own- and other-race faces under these two typical task demands. Unfortunately, to date, results have been mixed. In the current study, we investigated whether categorization and individuation differ for own- and other-race faces during the encoding stage by using racial categorization and learning-recognition tasks. We found that task demands not only influence the encoding of racial faces, but also have a more profound effect in the encoding stage of recognition tasks for other-race faces. More specifically, own-race faces demonstrate deeper structural encoding than other-race faces, with less attentional involvement. Moreover, recognitions tasks might ask for more individual-level encoding, requiring more attentional resources in the early stage that may be maintained until relatively late stages. Our results provide some evidence concerning task selection for future racial face studies and establish a groundwork for a unified interpretation of racial face encoding.

Ultrafast Optical Probe of Coherent Acoustic Phonons in Dirac Semimetal Cd3As2 Film Epitaxied on GaAs(111)B Substrate.

Coherent longitudinal acoustic phonon (CAP) generation in epitaxial Dirac semimetal Cd3As2 films with different thicknesses was investigated by a time-resolved reflectance technique. The short-lived weak CAP oscillations can be observed only in the thicker Cd3As2 films, and their central frequency of 0.039 THz has no dependence on sample thickness, but is nearly inversely proportional to the probe wavelength. For the 20 nm thin film, the observed long-lived CAP with a central frequency of 0.049 THz is generated in the GaAs(111)B substrate underneath. A sound velocity of 3800 m/s for the Cd3As2 film and 5360 m/s for the GaAs(111)B substrate is thus deduced. In addition, the opposite CAP amplitude and lifetime dependence on temperature further confirms the electronic and thermal stress origination of CAP generated in GaAs(111)B and Cd3As2 film, respectively, based on the propagating strain pulse model. The central frequency of CAP is found to be stable with increasing pumping fluence and temperature, which makes Cd3As2 a potential material for thermoelectric device applications.

A Novel Keyword Generation Model Based on Topic-Aware and Title-Guide.

Keywords are usually one or more words or phrases that describe the subject information of the document. The traditional automatic keywords extraction methods cannot obtain the keywords which do not appear in the document, and the semantic information is not considered in the extraction process. In this paper, we introduce a novel Keyword Generation Model based on Topic-aware and Title-guide (KGM-TT). In the KGM-TT, the neural topic model is used to identify the latent topic words, and a hierarchical encoder technology with attention mechanism is able to encode the title and its content, respectively. The keywords are generated by the recurrent neural network with attention and replication mechanism in our model. This model can not only generate the keywords which do not appeared in the source document but also use the topic information and the highly summative word meaning in the title to assist the generation of keywords. The experimental results show that the F1 value of this model is about 10% higher than that of CopyRNN and CopyCNN.

SDTM: A Novel Topic Model Framework for Syndrome Differentiation in Traditional Chinese Medicine.

Syndrome differentiation is the most basic diagnostic method in traditional Chinese medicine (TCM). The process of syndrome differentiation is difficult and challenging due to its complexity, diversity, and vagueness. Recently, artificial intelligent methods have been introduced to discover the regularities of syndrome differentiation from TCM medical records, but the existing DM algorithms failed to consider how a syndrome is generated according to TCM theories. In this paper, we propose a novel topic model framework named syndrome differentiation topic model (SDTM) to dynamically characterize the process of syndrome differentiation. The SDTM framework utilizes latent Dirichlet allocation (LDA) to discover the latent semantic relationship between symptoms and syndromes in mass of Chinese medical records. We also use similarity measurement method to make the uninterpretable topics correspond with the labeled syndromes. Finally, Bayesian method is used in the final differentiated syndromes. Experimental results show the superiority of SDTM over existing topic models for the task of syndrome differentiation.

Strain-induced circular photogalvanic current in Dirac semimetal Cd3As2 films epitaxied on a GaAs(111)B substrate.

Dirac semimetal (DSM) Cd3As2 has drawn great attention for exploring the novel quantum phenomena and high-speed optoelectronic applications. The circular photogalvanic effect (CPGE) current, resulting from the optically-excited spin orientation transport, was theoretically predicted to vanish in an ideal Dirac system due to the symmetric photoexcitation about the Dirac point. Here, we reported the observation of the CPGE photocurrent in epitaxial Cd3As2 thin films grown on a GaAs(111)B substrate. The signature of the CPGE is confirmed by its sign reversal upon switching the helicity of optical radiation, as well as its dependence on the excitation incident angle and power. By comparison of the CPGE response between the films with different thicknesses, it is suggested that the observed CPGE results from the reduced structure symmetry and substantially modified electronic band structure of the Cd3As2 thin film that undergoes large epitaxial strain. Our experimental findings provide a valuable reference for the band engineering and exotic helicity-dependent photocurrent phenomena in DSMs towards their potential opto-spintronic device applications.

Semantic feedback processing mechanism of the enactment effect: Evidence from event-related potentials.

The enactment effect refers to a phenomenon in which the memory performance for action phrases is enhanced by performing the described action (e.g., sharpen a pencil) compared with simply reading the action phrase. This produced effect can result in improved motor processing. This study investigated the contribution of semantic integration to the enactment effect by contrasting well-integrated phrases, such as "blow up the balloon," with poorly integrated phrases, such as "sew the toothpick," and analysing the N400 component of event-related potentials (ERPs). The subjects encoded action phrases with different degrees of semantic integration by either pretending to perform or reading action phrases. They then completed a phrase recognition test, while electroencephalographic signals were simultaneously recorded. The behavioural results showed that semantic integration improved memory performance under the motor encoding condition but not under the verbal encoding condition. The ERP results revealed that, regardless of whether it was an old (memorised) or new (distractor) phrase, a larger N400 component was elicited under the motor encoding condition than under the verbal encoding condition. In the motor encoding condition, poorly integrated phrases elicited a larger N400 component than well-integrated phrases; in the verbal encoding condition, this effect was not observed. The N400 effect associated with semantic processing was enhanced by semantic integration under the motor encoding condition rather than the verbal encoding condition. These results supported a deep semantic processing mechanism under the motor encoding condition, and a semantic feedback processing mechanism for the enactment effect was partially supported.

Anti-Angiogenic Agent Combined with Anti-PD-1 Immunotherapy Showed Activity in Patients With Classical Hodgkin Lymphoma Who Have Failed Immunotherapy: A Retrospective Case Report Study.

Background: PD-1/PD-L1 inhibitor immunotherapy has showed impressive activity in various cancers, especially relapsed/refractory (r/r) classical Hodgkin lymphoma (cHL). However, acquired resistance is inevitable for most patients. Sometimes severe side effects also lead to treatment termination. When immunotherapy failed, alternative treatment options are limited. In the past few years, we have used the anti-angiogenic agent apatinib and PD-1 inhibitor camrelizumab to treat cHL patients who failed prior immunotherapy. In this study, we analyzed the data of these patients. Patients and Methods: Patients with r/r cHL who had failed immunotherapy and subsequently received apatinib-camrelizumab (AC) combination therapy were included in this study. Patient data were collected from medical records and follow-up system. The efficacy and safety of AC therapy were analyzed. Results: Seven patients who failed immunotherapy were identified in our database, of which five patients acquired immunotherapy resistance and two patients experienced severe side effects. They received a combination of camrelizumab (200 mg every four weeks) and apatinib (425 mg or 250 mg per day). As of the cut-off date, these patients had received a median of 4 cycles (range, 2 - 31) of treatment. Two (2/7) patients achieved complete response, four (4/7) partial response, and one (1/7) stable disease. The median progression-free survival was 10.0 months (range, 2.0 - 27.8). Low-dose apatinib (250 mg) plus camrelizumab was well tolerated and had no unexpected side effects. Besides, no reactive cutaneous capillary endothelial proliferation was observed in AC-treated patients. Conclusions: Low dose apatinib plus camrelizumab might be a promising treatment option for r/r cHL patients who have failed immunotherapy. This combination treatment is worthy of further investigation in more patients including solid cancer patients who have failed immunotherapy.

Efficacy of Chemotherapy in Survival of Stage I Nasopharyngeal Carcinoma.

PURPOSE: To identify whether chemoradiotherapy improves survival of stage I nasopharyngeal carcinoma (NPC). MATERIALS AND METHODS: NPC patients were extracted from the Surveillance, Epidemiology, and End Results database between 2010 and 2015. Pathologically confirmed stage T1N0M0 (the 7th edition AJCC) were investigated. Overall survival (OS) and cancer-specific survival (CSS) were compared between the radiotherapy and chemoradiotherapy groups using the Kaplan-Meier method and propensity score matching (PSM) analyses. RESULTS: This study included 91 (40.27%) patients in the chemoradiotherapy group and 135 (59.73%) patients in the radiotherapy group. Before PSM, chemoradiotherapy was associated with worse 3-year OS (74.31 vs 87.23%; P = 0.025) and 5-year OS (64.28 vs 83.12%; P = 0.001) compared to those associated with radiotherapy. Similarly, chemoradiotherapy showed worse 3-year CSS (87.01 vs 96.97%; P = 0.028) and 5-year CSS (80.39 vs. 96.97%; P = 0.002) than those of radiotherapy. After PSM, chemoradiotherapy revealed worse 5-year OS (63.10 vs. 82.49%; P = 0.031) and CSS (80.95 vs. 93.70%; P = 0.016) than radiotherapy. The multivariate regression analysis revealed that chemoradiotherapy was an independent risk prognostic factor for OS and CSS before and after PSM. CONCLUSION: Radiotherapy alone is recommended for stage I NPC patients.

Plexcitons, electric field gradient and electron-phonon coupling in tip-enhanced Raman spectroscopy (TERS).

Tip-Enhanced Raman Spectroscopy (TERS) provides very high spatial resolution and detection sensitivity, so it has important applications in nano-scale molecular analysis. Plexciton is a polarization mode caused by a strongly coupled interaction between plasma excitons and excitons. It is a hot topic in plasma photonics research. We introduce the characteristics, production methods, observation methods and some applications of TERS. The electric field gradient (EFG) is an important factor affecting TERS resolution. The electron-phonon interaction is a fundamental inelastic interaction and plays an important role in current-carrying single-molecular junctions. This article summarizes the characteristics and applications of these three parts for readers to gain a preliminary understanding.