Global dissection of the recombination landscape in soybean using a high-density 600K SoySNP array.

Recombination is crucial for crop breeding because it can break linkage drag and generate novel allele combinations. However, the high-resolution recombination landscape and its driving forces in soybean are largely unknown. Here, we constructed eight recombinant inbred line (RIL) populations and genotyped individual lines using the high-density 600K SoySNP array, which yielded a high-resolution recombination map with 5636 recombination sites at a resolution of 1.37 kb. The recombination rate was negatively correlated with transposable element density and GC content but positively correlated with gene density. Interestingly, we found that meiotic recombination was enriched at the promoters of active genes. Further investigations revealed that chromatin accessibility and active epigenetic modifications promoted recombination. Our findings provide important insights into the control of homologous recombination and thus will increase our ability to accelerate soybean breeding by manipulating meiotic recombination rate.

Identification of Quantitative Trait Locus and Candidate Genes for Drought Tolerance in a Soybean Recombinant Inbred Line Population.

With global warming and regional decreases in precipitation, drought has become a problem worldwide. As the number of arid regions in the world is increasing, drought has become a major factor leading to significant crop yield reductions and food crises. Soybean is a crop that is relatively sensitive to drought. It is also a crop that requires more water during growth and development. The aim of this study was to identify the quantitative trait locus (QTL) that affects drought tolerance in soybean by using a recombinant inbred line (RIL) population from a cross between the drought-tolerant cultivar 'Jindou21' and the drought-sensitive cultivar 'Zhongdou33'. Nine agronomic and physiological traits were identified under drought and well-watered conditions. Genetic maps were constructed with 923,420 polymorphic single nucleotide polymorphism (SNP) markers distributed on 20 chromosomes at an average genetic distance of 0.57 centimorgan (cM) between markers. A total of five QTLs with a logarithm of odds (LOD) value of 4.035-8.681 were identified on five chromosomes. Under well-watered conditions and drought-stress conditions, one QTL related to the main stem node number was located on chromosome 16, accounting for 17.177% of the phenotypic variation. Nine candidate genes for drought resistance were screened from this QTL, namely Glyma.16G036700, Glyma.16G036400, Glyma.16G036600, Glyma.16G036800, Glyma.13G312700, Glyma.13G312800, Glyma.16G042900, Glyma.16G043200, and Glyma.15G100700. These genes were annotated as NAC transport factor, GATA transport factor, and BTB/POZ-MATH proteins. This result can be used for molecular marker-assisted selection and provide a reference for breeding for drought tolerance in soybean.

The GmSNAP11 Contributes to Resistance to Soybean Cyst Nematode Race 4 in Glycine max.

Soybean cyst nematode (SCN) has devastating effects on soybean production, making it crucial to identify genes conferring SCN resistance. Here we employed next-generation sequencing-based bulked segregant analysis (BSA) to discover genomic regions, candidate genes, and diagnostic markers for resistance to SCN race 4 (SCN4) in soybean. Phenotypic analysis revealed highly significant differences among the reactions of 145 recombinant inbred lines (RILs) to SCN4. In combination with euclidean distance (ED) and Δsingle-nucleotide polymorphism (SNP)-index analyses, we identified a genomic region on Gm11 (designated as rhg1-paralog) associated with SCN4 resistance. Overexpression and RNA interference analyzes of the two candidate genes identified in this region (GmPLAC8 and GmSNAP11) revealed that only GmSNAP11 significantly contributes to SCN4 resistance. We developed a diagnostic marker for GmSNAP11. Using this marker, together with previously developed markers for SCN-resistant loci, rhg1 and Rhg4, we evaluated the relationship between genotypes and SCN4 resistance in 145 RILs and 30 soybean accessions. The results showed that all the SCN4-resistant lines harbored all the three loci, however, some lines harboring the three loci were still susceptible to SCN4. This suggests that these three loci are necessary for the resistance to SCN4, but they alone cannot confer full resistance. The GmSNAP11 and the diagnostic markers developed could be used in genomic-assisted breeding to develop soybean varieties with increased resistance to SCN4.

Assessing the fermentation quality and microbial community of the mixed silage of forage soybean with crop corn or sorghum.

The silage quality of forage soybean (FS) rich in protein with crop corn (CN) or sorghum (SG) rich in water soluble carbohydrate was investigated, and microbial community after ensiling was analyzed. Results showed that pH in mixed silages dropped to 3.5-3.8 lower than 100%FS silage (4.5). Microbial analysis indicated that mixed ensiling could influence the microbial community. Although Lactobacillus and Weissella were the dominant genera in all silage samples, Lactobacillus abundance in mixed silages (33-76%) was higher compared with 100%FS silage (27%). In conclusion, FS ensiled with CN or SG could be an alternative approach to improve FS silage quality.

Porous graphene oxide/carboxymethyl cellulose monoliths, with high metal ion adsorption.

Orderly porous graphene oxide/carboxymethyl cellulose (GO/CMC) monoliths were prepared by a unidirectional freeze-drying method. The porous monoliths were characterized by Fourier transform infrared spectra, X-ray diffraction and scanning electron microscopy. Their properties including compressive strength and moisture adsorption were measured. The incorporation of GO changed the porous structure of the GO/CMC monoliths and significantly increased their compressive strength. The porous GO/CMC monoliths exhibited a strong ability to adsorb metal ions, and the Ni(2+) ions adsorbed on GO/CMC monolith were reduced by NaBH4 to obtain Ni GO/CMC monolith which could be used as catalyst in the reduction of 4-nitrophenol to 4-aminophenol. Since CMC is biodegradable and non-toxic, the porous GO/CMC monoliths are potential environmental adsorbents.

Cost-effective reduced graphene oxide-coated polyurethane sponge as a highly efficient and reusable oil-absorbent.

Reduced graphene oxide coated polyurethane (rGPU) sponges were fabricated by a facile method. The structure and properties of these rGPU sponges were characterized by Fourier transform infrared spectroscopy, thermal gravimetric analysis, X-ray diffraction, and scanning electron microscopy. The rGPU sponges are hydrophobic and oleophilic and show extremely high absorption for organic liquids. For all the organic liquids tested, the absorption capacities were higher than 80 g g(-1) and 160 g g(-1) (the highest value) was achieved for chloroform. In addition, the absorption capacity of the rGPU sponge did not deteriorate after it was reused 50 times, so the rGPU sponge has excellent recyclability.

Molecularly imprinted photonic crystals for the direct label-free distinguishing of L-proline and D-proline.

Novel molecularly imprinted photonic crystals (IPCs) for the highly sensitive label-free detection of L-proline and for the chiral recognition of L/D-proline were reported. A series of L-proline imprinted polyacrylamide photonic crystals (PAM-LPIPCs) and poly(acrylamide-co-acrylic acid) photonic crystals (PAM-co-AA-LPIPCs) were fabricated via the in situ polymerization of polystyrene opal. The PAM-LPIPCs exhibit good molecular response in L-proline solutions and can be visualized by the naked eye much like a pH test paper. The concentration of imprinted molecules (L-proline) in aqueous solution can be detected by the chromatic signal (structural color) or the optical signal (λmax). Furthermore, the responsivity and sensitivity of the PAM-co-AA-LPIPCs can be improved by increasing the amount of the imprinted content or the proportion of AA, or by decreasing the ratio of the cross-linking agent. When all these factors were balanced, a PAM2-co-AA0.4-LP0.5 IPC with good strength, high responsivity, high sensitivity and specific molecular recognition was obtained. It is found that the presented crystals can show obvious response to L-proline solution even at a low concentration of 1%. The PAM2-co-AA0.4-LP0.5 IPC not only very selectively distinguishes between L-proline and nicotinic acid, but it is also good at chiral recognition between L-proline and D-proline. What is more, the response is rapid and reversible and the IPC is recyclable.

An environmentally friendly method for the fabrication of reduced graphene oxide foam with a super oil absorption capacity.

Three kinds of graphene oxide (GO) foams were fabricated using different freezing methods (unidirectional freezing drying (UDF), non-directional freezing drying, and air freezing drying), and the corresponding reduced graphene oxide (RGO) foams were prepared by their thermal reduction of those GO foams. These RGO foams were characterized by Fourier transform infrared spectroscopy, thermal gravimetric analysis, X-ray diffraction, X-ray photoelectron spectroscopy, and scanning electron microscopy. The absorption process and the factors that influence the absorption capacity were investigated. The RGO foams are hydrophobic and showed extremely high absorbing abilities for organic liquids. The absorption capacity of the RGO foams made by UDF was higher than 100 g g(-1) for all the oils tested (gasoline, diesel oil, pump oil, lubricating oil and olive oil) and had the highest value of about 122 g g(-1) for olive oil. The oil absorption capacity of the GO foams was lower than that of the RGO foams, but for olive oil, the absorption capacity was still high than 70 g g(-1), which is higher than that of most oil absorbents.

Graphene oxide supported Au-Ag alloy nanoparticles with different shapes and their high catalytic activities.

A simple method was developed to fabricate Au-Ag nanoparticle/graphene oxide nanocomposites (Au-Ag/GO) by using simultaneous redox reactions between AgNO3, HAuCl4 and GO. The Au-Ag/GO was characterized by x-ray photoelectron spectroscopy, transmission electron microscopy and energy dispersive x-ray spectroscopy. The GO nanosheets acted as the reducing agent and the support for the Au-Ag alloy nanoparticles. In addition, Au-Ag alloy nanoparticles with different shapes including core-shell-like, dendrimer-like and flower-like were obtained by simply modifying the concentration of the reactants and the reaction temperature. With no reducing or stabilizing agents added, the Au-Ag/GO nanocomposites show superior catalytic performance for the reduction of 4-nitrophenol and for the aerobic homocoupling of phenylboronic acid.