Drivers of functional diversity in the hyporheic zone of a large river.

The effects of regional (hydrogeology and geomorphology) and local (sediment and hydrology) characteristics on hyporheic assemblages were studied along a 40-km reach of a large gravel-bed river. Hyporheic water and fauna were sampled at the upstream and downstream positions of 15 large gravel bars. The resulting 30 stations varied in their sediment grain size, stability and direction of river-aquifer exchanges. The study concludes that at the 40-km (sector) scale, the longitudinal distribution of hyporheic fauna was controlled by 1) the hydrogeology of the valley (i.e. gaining vs loosing sectors) that modifies abundance and taxonomic richness of stygobites 2) current channel morphometry of the river (i.e. shape and location of meanders), and 3) historical changes (i.e. river incision) which modify abundance and richness of assemblages. At the local scale, we found that surface grain size and stability of the sediment evaluated by visual observation were poor predictors of hyporheos composition. In contrast, the local hydrology (i.e. downwellings, upwellings, low vertical exchanges) explained a large part of the abundance, taxonomic richness and composition of the hyporheic assemblages. Stations with low vertical exchanges were found poorly colonized, while the upwelling zones were rich in stygobites and downwelling areas harbor abundant and species-rich temporary hyporheos. It was also observed that functional diversity was controlled by the same parameters, with high relative abundances of stygobites in upwelling zones and POM feeders in downwelling zones. The heterogeneity of hydrological patterns, with alternation of upwellings and downwellings may represent the optimal spatial structure for hyporheic biodiversity conservation and resilience in rivers.

Scale-dependent effects of vegetation on flow velocity and biogeochemical conditions in aquatic systems.

In rivers, scale-dependent feedbacks resulting from physical habitat modifications control the lateral expansion of submerged plant patches, while the mechanisms that limit patch expansion on a longitudinal dimension remain unknown. Our objective was to investigate the effects of patch length on physical habitat modification (i.e., flow velocity, sediment grain size distribution), the consequences for biogeochemical conditions (i.e., accumulation/depletion of nutrients, microbial respiration), and for individual plants (i.e., shoot length). We measured all of these parameters along natural patches of increasing length. These measurements were performed at two sites that differed in mean flow velocity, sediment grain size, and trophic level. The results showed a significant effect of patch length on organic matter content and nutrient concentrations in interstitial water. For the shortest patches sampled, all of these parameters had similar values to those measured at the upstream control position. For longer patches, organic matter content and orthophosphate and ammonium concentrations increased within the patch compared to the upstream bare sediment, whereas nitrate concentrations decreased, suggesting changes in vertical water exchanges and an increase in anaerobic microbial activities. Furthermore, plant height was related to patch length by a quadratic pattern, probably due reduced hydrodynamic stress occurring for increasing patch length, combined with conditions that are less favourable for plants over a threshold length, possibly due to the light limitation or to the high concentration of ammonium that in the concentration range we measured may be toxic for plants. The threshold lengths over which patches influence the nutrient concentrations were reduced for the site with higher nutrient levels. We demonstrated that the plant-induced modifications of the physical habitat exert important effects on biogeochemical conditions, with possible consequences for patch dynamics and ecosystem functioning.

Does spatial heterogeneity of hyporheic fauna vary similarly with natural and artificial changes in braided river width?

Heterogeneity of hyporheic fauna is associated with geomorphological features and related vertical water exchanges. Constrictions on river floodplain are known to induce groundwater inputs and increase stygobite fauna. Two floodplain constrictions were studied in a large braided river (the Drôme River): one linked to a natural process (valley narrowing), another to an artificial river regulation (early 20th embankment). Spatial distribution of hyporheic organisms were sampled upstream and downstream of the two constrained sections, at 9 stations, 3 positions (left and right sides, centre of the braided strip), 3 replication points and at a depth of 50 cm in the river sediment. The spatial heterogeneity in community composition was higher near the banks than at the centre of the braided strip, no matter the width of the strip. The artificial constriction induced a decrease in spatial heterogeneity of the benthic fraction of the hyporheic fauna, but no changes were detected for the stygofauna. The natural valley narrowing reduced width and thickness of the alluvium and induced an inflow of groundwater resulting in an increase in stygofauna abundance. Natural floodplain narrowing linked to geology thus control the distribution of stygobite species, while artificial constrictions only modify the spatial distribution of the benthic fraction of the hyporheic fauna.

Do thermal infrared (TIR) remote sensing and direct hyporheic measurements (DHM) similarly detect river-groundwater exchanges? Study along a 40 km-section of the Ain River (France).

Water exchanges through the hyporheic zone are crucial to many ecological processes in streams. One major challenge for river managers is to find a practical method for localizing these exchanges using rapid data acquisition techniques. This work compares spatially continuous data, acquired by Thermal Infrared (TIR) techniques, with discrete data collected in surface water and in the hyporheic zone (DHM), at sites of expected water exchanges (gravel bars). Forty gravel bars, distributed along a 40 km-sector of the Ain River were sampled at upstream- and downstream-bar positions (80 sites) in order to reveal hyporheic exchanges. At each site, 4 physico-chemical parameters were measured at 0, -20 and -50 cm beneath the sediment surface. The field collections of TIR high-resolution images were conducted concomitantly, at low flow and high surface-water temperatures. Among the 80 sites selected for field measurements, 14 were identified as upwellings (groundwater inputs) and 66 as downwelling sites. From those 14 upwellings, 13 were also identified with TIR. The 44 additional sites identified with TIR corresponded to small-sized cold-water patches situated along the gravel bars or to groundwater discharge sites located between the bars (19 lateral seeps). Nevertheless, the DHM method documented on downwelling exchanges (infiltration of surface water), which were not captured by TIR images, and may represent hyporheic hotspots especially for benthic invertebrates. Along the studied sector of the Ain River, these downwelling zones were much more numerous than upwelling ones. Both methods in combination provide a rather complete picture of water exchange along rivers and are needed to evaluate the potential as refuges zones during critical dry periods.

[Strengths, weaknesses, and opportunities of French research in trophic ecology]. / Forces, failles et opportunités de la recherche française en écologie trophique.

The French National Institute of Ecology and Environment (INEE) aims at fostering pluridisciplinarity in Environmental Science and, for that purpose, funds ex muros research groups (GDR) on thematic topics. Trophic ecology has been identified as a scientific field in ecology that would greatly benefit from such networking activity, as being profoundly scattered. This has motivated the seeding of a GDR, entitled "GRET". The contours of the GRET's action, and its ability to fill these gaps within trophic ecology at the French national scale, will depend on the causes of this relative scattering. This study relied on a nationally broadcasted poll aiming at characterizing the field of trophic ecology in France. Amongst all the unique individuals that fulfilled the poll, over 300 belonged at least partly to the field of trophic ecology. The sample included all French public research institutes and career stages. Three main disruptions within the community of scientist in trophic ecology were identified. The first highlighted the lack of interfaces between microbial and trophic ecology. The second evidenced that research questions were strongly linked to single study fields or ecosystem type. Last, research activities are still quite restricted to the ecosystem boundaries. All three rupture points limit the conceptual and applied progression in the field of trophic ecology. Here we show that most of the disruptions within French Trophic Ecology are culturally inherited, rather than motivated by scientific reasons or justified by socio-economic stakes. Comparison with the current literature confirms that these disruptions are not necessarily typical of the French research landscape, but instead echo the general weaknesses of the international research in ecology. Thereby, communication and networking actions within and toward the community of trophic ecologists, as planned within the GRET's objectives, should contribute to fill these gaps, by reintegrating microbes within trophic concepts and setting the seeds for trans- and meta-ecosystemic research opportunities. Once the community of trophic ecologists is aware of the scientific benefit in pushing its boundaries forwards, turning words and good intentions into concrete research projects will depend on the opportunities to obtain research funding.

Ecology-based evaluation of groundwater ecosystems under intensive agriculture: A combination of community analysis and sentinel exposure.

Ecological criteria are needed for a comprehensive evaluation of groundwater ecosystem health by including biological components with the physical and chemical properties that are already required by European directives. Two methodological approaches to assess the ecological status of groundwater ecosystems were combined in two alluvial plains (the Ariège and Hers Rivers, southwestern France) varying in agriculture intensity (from grassland to crop rotation including maize and sunflower, and to maize monoculture). In the first approach, the composition of invertebrate assemblages (only obligate-groundwater crustaceans, i.e. stygobionts) sampled in 28 wells differing in their land use contexts was analysed. Abundance, species richness, and assemblage composition significantly changed with agricultural land use or urbanization around the wells. In the second approach, we tested an in situ exposure of sentinel organisms to quantify their response to the environmental pressures. The epigean and native amphipod species Gammarus cf. orinos was used as the sentinel species. Amphipods (30 individuals in each of 10 wells) were exposed for one week to the in situ conditions at two seasons with contrasted concentrations of pollutants. The Ecophysiological Index (EPI) synthetizing the survival rates and energetic storage decreased in wells with low oxygen and high nitrate concentrations, but only during the highest contamination period. Atrazine-related compounds negatively impacted sentinel health whatever the season. The combination of these two approaches may have major applications for orientating groundwater ecosystem management.

Long-term stormwater quantity and quality analysis using continuous measurements in a French urban catchment.

The assessment of urban stormwater quantity and quality is important for evaluating and controlling the impact of the stormwater to natural water and environment. This study mainly addresses long-term evolution of stormwater quantity and quality in a French urban catchment using continuous measured data from 2004 to 2011. Storm event-based data series are obtained (716 rainfall events and 521 runoff events are available) from measured continuous time series. The Mann-Kendall test is applied to these event-based data series for trend detection. A lack of trend is found in rainfall and an increasing trend in runoff is detected. As a result, an increasing trend is present in the runoff coefficient, likely due to growing imperviousness of the catchment caused by urbanization. The event mean concentration of the total suspended solid (TSS) in stormwater does not present a trend, whereas the event load of TSS has an increasing tendency, which is attributed to the increasing event runoff volume. Uncertainty analysis suggests that the major uncertainty in trend detection results lies in uncertainty due to available data. A lack of events due to missing data leads to dramatically increased uncertainty in trend detection results. In contrast, measurement uncertainty in time series data plays a trivial role. The intra-event distribution of TSS is studied based on both M(V) curves and pollutant concentrations of absolute runoff volumes. The trend detection test reveals no significant change in intra-event distributions of TSS in the studied catchment.

Dynamics of dissolved organic carbon (DOC) through stormwater basins designed for groundwater recharge in urban area: Assessment of retention efficiency.

Managed aquifer recharge (MAR) has been developed in many countries to limit the risk of urban flooding and compensate for reduced groundwater recharge in urban areas. The environmental performances of MAR systems like infiltration basins depend on the efficiency of soil and vadose zone to retain stormwater-derived contaminants. However, these performances need to be finely evaluated for stormwater-derived dissolved organic matter (DOM) that can affect groundwater quality. Therefore, this study examined the performance of MAR systems to process DOM during its transfer from infiltration basins to an urban aquifer. DOM characteristics (fluorescent spectroscopic properties, biodegradable and refractory fractions of dissolved organic carbon -DOC-, consumption by micro-organisms during incubation in slow filtration sediment columns) were measured in stormwater during its transfer through three infiltration basins during a stormwater event. DOC concentrations sharply decreased from surface to the aquifer for the three MAR sites. This pattern was largely due to the retention of biodegradable DOC which was more than 75% for the three MAR sites, whereas the retention of refractory DOC was more variable and globally less important (from 18% to 61% depending on MAR site). Slow filtration column experiments also showed that DOC retention during stormwater infiltration through soil and vadose zone was mainly due to aerobic microbial consumption of the biodegradable fraction of DOC. In parallel, measurements of DOM characteristics from groundwaters influenced or not by MAR demonstrated that stormwater infiltration increased DOC quantity without affecting its quality (% of biodegradable DOC and relative aromatic carbon content -estimated by SUVA254-). The present study demonstrated that processes occurring in soil and vadose zone of MAR sites were enough efficient to limit DOC fluxes to the aquifer. Nevertheless, the enrichments of DOC concentrations measured in groundwater below infiltration basins need to be considered in future studies to especially assess their impact on groundwater quality.

Coupling groundwater modeling and biological indicators for identifying river/aquifer exchanges.

Future climate changes and the resulting modifications in anthropogenic activities will alter the interactions between rivers and groundwater. The quantification of these hydraulic interactions is absolutely necessary for achieving sustainable water use and requires accurate analytical methodologies. This report proposes an interdisciplinary approach to the quantitative and qualitative characterization of hydraulic interactions between rivers and shallow aquifers, wherein it outlines the advantages of coupling groundwater modeling with biological markers. As a first step, we built independent diagnostic maps of hydrological exchanges at the sector scale on the basis of hydrogeological modeling and biological indicators. In a second step, these maps were compared to provide a quantitative and qualitative understanding of exchanges between groundwater and surface water. This comparison significantly improved the calibration of groundwater models through a better assessment of boundary zones. Our approach enabled us to identify the conditions under which it could be possible to use biological indicators instead of a large set of piezometric measures. The integration of such combined tools in a future decision support system will assist governmental authorities in proposing appropriate long-term water policies for the preservation of groundwater resources, such as for supplying potable water and/or mitigating pollution risks.

The combined effects of water level reduction and an increase in ammonia concentration on organic matter processing by key freshwater shredders in alluvial wetlands.

In a global change context, the intensity and the frequency of drastic low flow periods or drought events will most likely increase to a substantial extent over the coming decades, leading to a modification in the abiotic characteristics of wetlands. This change in environmental parameters may induce severe shifts in plant and animal communities and the functioning of ecosystems. In this study, we experimentally estimated the effect of drought and the accumulation of ammonia (NH3 ) on the feeding activities of three generalist macroinvertebrates (i.e. Gammarus pulex, Gammarus roeselii and Asellus aquaticus) on three types of organic matter: leaves of Berula erecta growing in submerged conditions, leaves of the same species growing in emerged conditions and dead leaves of Alnus glutinosa. We observed a modification in the biomechanical and stoichiometric characteristics of the plants as a result of the emersion of the aquatic plants. This shift produced a substantial decrease in organic matter recycling by invertebrates and in their associated physiological ability (i.e. the energy stores of the animals) to face conditions associated with environmental change. Moreover, the accumulation of NH3 amplified the negative effect of emersion. This snowball effect on invertebrates may profoundly modify the functioning of ecosystems, particularly in terms of organic matter production/degradation and carbon mineralization.

Seasonal variations of the effect of temperature on lethal and sublethal toxicities of ammonia for three common freshwater shredders.

In a context of global change, increases in temperature and in ammonia concentration should strongly affect the crustaceans of wetlands. We experimentally examined, at three different seasons (i.e. winter, spring, and summer), the effect of temperature (12, 18, and 24°C) on the lethal (survival rates) and sublethal (oxygen consumption) toxicity of unionized ammonia (NH(3)) on the amphipods Gammarus pulex and Gammarus roeselii and the isopod Asellus aquaticus. Our results demonstrate (1) a gradient of increasing tolerance and survival from G. roeselii to G. pulex and A. aquaticus, (2) an increasing toxicity of ammonia with temperature, and (3) a strong seasonal variation of the tolerance to ammonia, with a higher tolerance of individuals in winter than in summer. However, the sub-lethal effect of ammonia on the oxygen consumption rate was species dependant and changed according to temperature or season. Global change and resulting variations in crustacean densities will potentially affect the ecosystem functioning (e.g. organic matter recycling).

Leaf litter recycling in benthic and hyporheic layers in agricultural streams with different types of land use.

Changes in land use and intensification of agricultural pressure have greatly accelerated the alteration of the landscape in most developed countries. These changes may greatly disturb the adjacent ecosystems, particularly streams, where the effects of pollution are amplified. In this study, we used the leaf litter breakdown rate to assess the functional integrity of stream ecosystems and river sediments along a gradient of either traditional extensive farming or a gradient of vineyard area. In the benthic layer, the total litter breakdown process integrates the temporal variability of the anthropogenic disturbances and is strongly influenced by land use changes in the catchment even though a low concentration of toxics was measured during the study period. This study also confirmed the essential role played by amphipods in the litter breakdown process. In contrast, microbial processes may have integrated the variations in available nutrients and dissolved oxygen concentrations, but failed to respond to the disturbances induced by vineyard production (the increase in pesticides and metal concentrations) during the study period. The response of microbes may not be sensitive enough for assessing the global effect of seasonal agricultural practices. Finally, the leaf litter breakdown measured in the hyporheic zone seemed mainly driven by microbial activities and was hence more affected by vertical exchanges with surface water than by land use practices. However, the breakdown rate of leaf litter in the hyporheic zone may constitute a relevant way to evaluate the impact on river functioning of any human activities that induce massive soil erosion and sediment clogging.

Water-sediment exchanges control microbial processes associated with leaf litter degradation in the hyporheic zone: a microcosm study.

The present study aimed to experimentally quantify the influence of a reduction of surface sediment permeability on microbial characteristics and ecological processes (respiration and leaf litter decomposition) occurring in the hyporheic zone (i.e. the sedimentary interface between surface water and groundwater). The physical structure of the water-sediment interface was manipulated by adding a 2-cm layer of coarse sand (unclogged systems) or fine sand (clogged systems) at the sediment surface of slow filtration columns filled with a heterogeneous gravel/sand sedimentary matrix. The influence of clogging was quantified through measurements of hydraulic conductivity, water chemistry, microbial abundances and activities and associated processes (decomposition of alder leaf litter inserted at a depth of 9 cm in sediments, oxygen and nitrate consumption by microorganisms). Fine sand deposits drastically reduced hydraulic conductivity (by around 8-fold in comparison with unclogged systems topped by coarse sand) and associated water flow, leading to a sharp decrease in oxygen (reaching less than 1 mg L(-1) at 3 cm depth) and nitrate concentrations with depth in sediments. The shift from aerobic to anaerobic conditions in clogged systems favoured the establishment of denitrifying bacteria living on sediments. Analyses performed on buried leaf litter showed a reduction by 30% of organic matter decomposition in clogged systems in comparison with unclogged systems. This reduction was linked to a negative influence of clogging on the activities and abundances of leaf-associated microorganisms. Finally, our study clearly demonstrated that microbial processes involved in organic matter decomposition were dependent on hydraulic conductivity and oxygen availability in the hyporheic zone.

Effects of intense agricultural practices on heterotrophic processes in streams.

In developed countries, changes in agriculture practices have greatly accelerated the degradation of the landscape and the functioning of adjacent aquatic ecosystems. Such alteration can in turn impair the services provided by aquatic ecosystems, namely the decomposition of organic matter, a key process in most small streams. To study this alteration, we recorded three measures of heterotrophic activity corresponding to microbial hydrolasic activity (FDA hydrolysis) and leaf litter breakdown rates with (k(c)) and without invertebrates (k(f)) along a gradient of contrasted agricultural pressures. Hydrolasic activity and k(f) reflect local/microhabitat conditions (i.e. nutrient concentrations and organic matter content of the sediment) but not land use while k(c) reflects land-use conditions. k(c), which is positively correlated with the biomass of Gammaridae, significantly decreased with increasing agricultural pressure, contrary to the taxonomic richness and biomass of Trichoptera and Plecoptera. Gammaridae may thus be considered a key species for organic matter recycling in agriculture-impacted streams.

Seasonal dynamics of denitrification along topohydrosequences in three different riparian wetlands.

We investigated the seasonal patterns of denitrification rates and potentials in soil profiles along the topohydrosequence formed at the upland-wetland interface in three riparian wetlands with different vegetation cover (i.e., forest, understory vegetation, and grass). Denitrification was measured using the acetylene inhibition method on soil cores and slurries, which provided a means of comparing the relative activity of this process in different locations. We evaluated, on a seasonal basis, the respective importance of the vegetative cover and the hydromorphic gradient as factors limiting denitrification. Regardless of the season, vegetation type, or lateral position along each topohydrosequence in the riparian wetlands, strong significant gradients of both in situ and potential denitrification rates were measured within a soil profile. Results confirm that the upper organic soil horizon is the most active, when in contact with the ground water. In deeper soil horizons, denitrification activity was low (from 0.004 to 0.5 mg N kg(-1) dry soil d(-1)), but contributed significantly to the reduction of ground water NO3- load along the riparian ground water flowpath (from 9.32 to 0.98 mg NO3-N L(-1)). Along the soil topohydrosequence, the denitrifying community of the upper soil horizons did not vary significantly on a seasonal basis despite the large seasonal ground water fluctuations. Along each topohydrosequence, the denitrification-limiting factor gradually shifted from anaerobiosis to NO3- supply. In situ denitrification rates in the forested, understory vegetation and grass sites were not significantly different. This result emphasizes the importance of the topography of the valley rather than the vegetation cover in controlling denitrification activity in riparian wetlands.