Dissection of Genetic Factors underlying Wheat Kernel Shape and Size in an Elite × Nonadapted Cross using a High Density SNP Linkage Map.

Wheat kernel shape and size has been under selection since early domestication. Kernel morphology is a major consideration in wheat breeding, as it impacts grain yield and quality. A population of 160 recombinant inbred lines (RIL), developed using an elite (ND 705) and a nonadapted genotype (PI 414566), was extensively phenotyped in replicated field trials and genotyped using Infinium iSelect 90K assay to gain insight into the genetic architecture of kernel shape and size. A high density genetic map consisting of 10,172 single nucleotide polymorphism (SNP) markers, with an average marker density of 0.39 cM/marker, identified a total of 29 genomic regions associated with six grain shape and size traits; ∼80% of these regions were associated with multiple traits. The analyses showed that kernel length (KL) and width (KW) are genetically independent, while a large number (∼59%) of the quantitative trait loci (QTL) for kernel shape traits were in common with genomic regions associated with kernel size traits. The most significant QTL was identified on chromosome 4B, and could be an ortholog of major rice grain size and shape gene or . Major and stable loci also were identified on the homeologous regions of Group 5 chromosomes, and in the regions of (6A) and (7A) genes. Both parental genotypes contributed equivalent positive QTL alleles, suggesting that the nonadapted germplasm has a great potential for enhancing the gene pool for grain shape and size. This study provides new knowledge on the genetic dissection of kernel morphology, with a much higher resolution, which may aid further improvement in wheat yield and quality using genomic tools.

Interdependence of Cultivar and Environment on Fiber Composition in Wheat Bran.

Starch and cellulose are among the best known renewable reinforcing components. Scientists are continuously looking for various renewable sources such as flax, hemp, jute, and corn hulls with polymer matrixes to form composite materials and make structural biocomposites a reality. Wheat is a major cereal grain in the US and the world. During wheat milling, a large amount of wheat bran, a by-product, is disposed off as waste. The high percentage of water-insoluble fiber in wheat bran could be advantageous for reinforcing industrial material. However, the utilization of cellulosic fibers derived from wheat byproduct has not been explored in processing of biocomposites. Therefore, the objectives of this study were to characterize wheat bran fiber compositions including dry matter (DM), ash, crude protein (CP), neutral detergent fiber (NDF), acid detergent fiber (ADF), cellulose (Cell), hemicellulose (Hemi), calcium (Ca), fat, starch, and acid detergent lignin (ADL); identify the interrelationship between the fiber composition traits and the influence of the environment and genotype on these traits. The experiment included six diverse and popular hard red spring wheat (HRSW) cultivars commonly grown in spring wheat region of the Northern Plains of USA. The experiment was installed in three different environments in the Dakotas States, USA. Results from this study showed that the DM, ash, Ca, Cell, starch, and ADL contents were influenced mainly by environments. However, CP along with fat, ash and Ca contents were influenced by genotypes in addition to environment. All bran components were influenced by the genotype × environment (G × E) interactions. We observed significant negative correlation of Cell with CP and ADL which make wheat bran a suitable reinforcing industrial material. However surface treatment of bran fiber would make it even more efficient. These preliminary results indicate the potential use of wheat bran components as biocomposite, but further studies to elucidate more these finding are warranted.

Identification of novel genomic regions associated with resistance to Pyrenophora tritici-repentis races 1 and 5 in spring wheat landraces using association analysis.

Tan spot, caused by Pyrenophora tritici-repentis, is a major foliar disease of wheat worldwide. Host plant resistance is the best strategy to manage this disease. Traditionally, bi-parental mapping populations have been used to identify and map quantitative trait loci (QTL) affecting tan spot resistance in wheat. The association mapping (AM) could be an alternative approach to identify QTL based on linkage disequilibrium (LD) within a diverse germplasm set. In this study, we assessed resistance to P. tritici-repentis races 1 and 5 in 567 spring wheat landraces from the USDA-ARS National Small Grains Collection (NSGC). Using 832 diversity array technology (DArT) markers, QTL for resistance to P. tritici-repentis races 1 and 5 were identified. A linear model with principal components suggests that at least seven and three DArT markers were significantly associated with resistance to P. tritici-repentis races 1 and 5, respectively. The DArT markers associated with resistance to race 1 were detected on chromosomes 1D, 2A, 2B, 2D, 4A, 5B, and 7D and explained 1.3-3.1% of the phenotypic variance, while markers associated with resistance to race 5 were distributed on 2D, 6A and 7D, and explained 2.2-5.9% of the phenotypic variance. Some of the genomic regions identified in this study correspond to previously identified loci responsible for resistance to P. tritici-repentis, offering validation for our AM approach. Other regions identified were novel and could possess genes useful for resistance breeding. Some DArT markers associated with resistance to race 1 also were localized in the same regions of wheat chromosomes where QTL for resistance to yellow rust, leaf rust and powdery mildew, have been mapped previously. This study demonstrates that AM can be a useful approach to identify and map novel genomic regions involved in resistance to P. tritici-repentis.

Refrigerated dough quality: effect of environment and genotypes of hard red spring wheat.

Refrigerated dough products use wheat flour as their primary ingredient, so the quality and chemical composition of the flour determine the quality of the final product. Six varieties of hard red spring wheat, grown in 3 locations in Minnesota, U.S.A., were evaluated for use in refrigerated dough products. Total arabinoxylan percentages in the flours ranged from 0.97 to 1.54. Xylanase activity of the flour was measured and ranged from 0.20 to 0.84 mU/g. An important factor in the suitability for refrigerated dough is the syruping during storage. A large amount of variability in dough syruping was observed among the varieties and locations when the extent of dough syruping was measured over a period of 10 d. The mean dough syruping on day 10 ranged from 2.05% to 14.83%. Despite the significant interaction effect of genotype and environment, 2 varieties, Glenn and Oklee, had lower dough syrup formation with greater stability across growing locations and storage days than other varieties. Practical Application: Refrigerated dough production is one of the fastest growing segments of the ready-to-use food industry. Well-formulated and processed refrigerated doughs are practical to consume and should stay fresh during extended periods of storage; thus, maintenance of dough quality during refrigeration is critical. This study was designed to perform the research on genotypic and environmental effects on variations in dough syruping during refrigeration storage of doughs from hard red spring wheats.

Genetic analysis of resistance to Pyrenophora tritici-repentis races 1 and 5 in tetraploid and hexaploid wheat.

Tan spot of wheat, caused by the fungus Pyrenophora tritici-repentis, is a destructive disease worldwide that can lead to serious losses in quality and quantity of wheat grain production. Resistance to multiple races of P. tritici-repentis was identified in a wide range of genetically diverse genotypes, including three different species Triticum aestivum (AABBDD), T. spelta (AABBDD), and T. turgidum (AABB). The major objectives of this study were to determine the genetic control of resistance to P. tritici-repentis races 1 and 5 in 12 newly identified sources of resistance. The parents, F(1), F(2), and F(2:3) or F(2:5) families of each cross were analyzed for the allelism tests and/or inheritance studies. Plants were inoculated at the two-leaf stage under controlled environmental conditions and disease reaction was assessed based on lesion-type rating scale. A single recessive gene controlled resistance to necrosis caused by P. tritici-repentis race 1 in both tetraploid and hexaploid resistant genotypes. The lack of segregation in the inter- and intra-specific crosses between the resistant tetraploid and hexaploid genotypes indicated that they possess the same genes for resistance to tan necrosis and chlorosis induced by P. tritici-repentis race 1. A single dominant gene for chlorosis in hexaploid wheat and a single recessive gene for necrosis in tetraploid wheat, controlled resistance to P. tritici-repentis race 5.

Genetic structure of Phaeosphaeria nodorum populations in the north-central and midwestern United States.

Stagonospora nodorum blotch, caused by Phaeosphaeria nodorum, is considered one of the most destructive foliar diseases of wheat in the United States. However, relatively little is known about the population biology of this fungus in the major wheat-growing regions of the central United States. To rectify this situation, 308 single-spore isolates of P. nodorum were analyzed from 12 populations, five from hard red spring wheat cultivars in Minnesota and North Dakota and seven from soft red winter wheat in Indiana and Ohio. The genetic structure of the sampled populations was determined by analyzing polymorphisms at five microsatellite or simple-sequence repeat (SSR) loci and the mating type locus. Although a few clones were identified, most P. nodorum populations had high levels of gene (H(S) = 0.175 to 0.519) and genotype (D = 0.600 to 0.972) diversity. Gene diversity was higher among isolates collected from spring wheat cultivars in North Dakota and Minnesota (mean H(S) = 0.503) than in those from winter wheat cultivars in Indiana and Ohio (H(S) = 0.269). Analyses of clone-corrected data sets showed equal frequencies of both mating types in both regional and local populations, indicating that sexual recombination may occur regularly. However, significant gametic disequilibrium occurred in three of the four populations from North Dakota, and there was genetic differentiation both within and among locations. Genetic differentiation between the hard red spring and soft red winter wheat production regions was moderate (F(ST) = 0.168), but whether this is due to differences in wheat production or to geographical variation cannot be determined. These results suggest that sexual reproduction occurs in P. nodorum populations in the major wheat-growing regions of the central United States, and that geographically separated populations can be genetically differentiated, reflecting either restrictions on gene flow or selection.

Reaction of Elite Wheat Genotypes from the Northern Great Plains of North America to Septoria Diseases.

Stagonospora nodorum blotch (SNB), caused by Phaeosphaeria nodorum, and Septoria tritici blotch (STB), caused by Mycosphaerella graminicola, are the main pathogens of the Septoria disease complex of wheat (Triticum aestivum) in North America. This study was conducted to determine the disease reaction of 126 elite hard red spring, white, and durum wheat cultivars and advanced breeding lines collected from the northern Great Plains of the United States and Canada to SNB and STB. Seedlings of the 126 wheat genotypes were evaluated for resistance to SNB and STB under controlled environmental conditions. Moreover, these 126 wheat genotypes also were infiltrated with culture filtrate of P. nodorum isolate Sn2000. Based on disease reactions, three cultivars (McNeal, Dapps, and Oklee) and 12 advanced breeding lines (CA-901-580W, 97SO254-8-1, MN03291, MN03308, WA007925, MT0245, ND756, ND801, ND803, ND808, ND809, and ND811) adapted to the northern Great Plains were found to be resistant to both Septoria diseases and insensitive to the culture filtrate. Additionally, eight genetically diverse lines and cultivars, including two tetraploid wheat genotypes, were identified to be resistant to both Septoria diseases. These results suggest that the wheat genotypes contain a broad genetic base for resistance to the Septoria diseases in the northern Great Plains of the United States and Canada, and the resistant sources identified in this study may be utilized in wheat-breeding programs.

Identification and Molecular Mapping of a Gene Conferring Resistance to Pyrenophora tritici-repentis Race 3 in Tetraploid Wheat.

ABSTRACT Race 3 of the fungus Pyrenophora tritici-repentis, causal agent of tan spot, induces differential symptoms in tetraploid and hexaploid wheat, causing necrosis and chlorosis, respectively. This study was conducted to examine the genetic control of resistance to necrosis induced by P. tritici-repentis race 3 and to map resistance genes identified in tetraploid wheat (Triticum turgidum). A mapping population of recombinant inbred lines (RILs) was developed from a cross between the resistant genotype T. tur-gidum no. 283 (PI 352519) and the susceptible durum cv. Coulter. Based on the reactions of the Langdon-T. dicoccoides (LDN[DIC]) disomic substitution lines, chromosomal location of the resistance genes was determined and further molecular mapping of the resistance genes for race 3 was conducted in 80 RILs of the cross T. turgidum no. 283/Coulter. Plants were inoculated at the two-leaf stage and disease reaction was assessed 8 days after inoculation based on lesion type. Disease reaction of the LDN(DIC) lines and molecular mapping on the T. turgidum no. 283/Coulter population indicated that the gene, designated tsn2, conditioning resistance to race 3 is located on the long arm of chromosome 3B. Genetic analysis of the F(2) generation and of the F(4:5) and F(6:7) families indicated that a single recessive gene controlled resistance to necrosis induced by race 3 in the cross studied.

Evaluation of Elite Wheat Germ Plasm for Resistance to Tan Spot.

Tan spot, caused by Pyrenophora tritici-repentis, is a serious foliar disease of wheat (Triticum aestivum) in North America. Control of tan spot through management practices and fungicide application is possible; however, the use of resistant varieties is the most effective and economical means of controlling tan spot. This study was conducted to determine the disease reaction of 126 elite hard red spring, white, and durum wheat varieties and advanced breeding lines collected from the northern Great Plains of the United States and Canada to individual races/toxins of P. tritici-repentis. Seedling evaluation of the 126 genotypes was done under controlled environmental conditions with virulent races 2, 3, and 5 of P. tritici-repentis and toxins Ptr ToxA and Ptr ToxB. Based on disease reactions, two resistant varieties and two advanced breeding lines adapted to the northern Great Plains were found to be resistant to all the races and insensitive to the toxins tested. Additionally, six genetically diverse lines/varieties were identified to be resistant to tan spot; however, these sources may not be well adapted to the northern Great Plains. These results suggest that the wheat germ plasm contains a broad genetic base for resistance to the most prevalent races of P. tritici-repentis in North America, and the resistant sources identified in this study may be utilized in wheat breeding programs to develop tan spot resistant varieties.

Evaluation of Resistance of Winter Wheat to Fusarium acuminatum by Inoculation of Seedling Roots with Single, Germinated Macroconidia.

Fusarium acuminatum is one of the causal agents of dryland root rot of winter wheat in Colorado. The effect of F. acuminatum seedling root infection, recorded at heading, on winter wheat cultivars Sandy and CO84 was investigated in the greenhouse. Winter wheat seeds were surface disinfested, germinated, and vernalized. Vernalized seedling roots were inoculated by placing a single, germinated macroconidium of F. acuminatum on the largest root. Inoculated and non-inoculated vernalized seedlings were transplanted to pots and half the plants subjected to water stress. Inoculated plants had significantly lower survival rates and, at maturity, lower relative leaf water content, fewer tillers, shorter plant height, and higher cell ion leakage than non-inoculated plants. Wheat cultivars differed significantly for most traits studied. CO84 was susceptible whereas Sandy was more tolerant of the pathogen, particularly under water stress conditions. These results suggest that relative leaf water content, cell ion leakage, and to some extent seedling survival may be useful attributes for evaluation of resistance to the root rot pathogen.