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1.
Yakugaku Zasshi ; 144(6): 633-641, 2024.
Artículo en Japonés | MEDLINE | ID: mdl-38825472

RESUMEN

Iron is necessary for all living organisms, and bacteria that cause infections in human hosts also need ferrous ions for their growth and proliferation. In the human body, most ferric ions (Fe3+) are tightly bound to iron-binding proteins such as hemoglobin, transferrin, lactoferrin, and ferritin. Pathogenic bacteria express highly specific iron uptake systems, including siderophores and specific receptors. Most bacteria secrete siderophores, which are low-molecular weight metal-chelating agents, to capture Fe3+ outside cell. Siderophores are mainly classified as either catecholate or hydroxamate. Vibrio vulnificus, a Gram-negative pathogenic bacterium, is responsible for serious infections in humans and requires iron for growth. A clinical isolate, V. vulnificus M2799, secretes a catecholate siderophore, vulnibactin, that captures ferric ions from the environment. In our study, we generated deletion mutants of the genes encoding proteins involved in the vulnibactin mediated iron-utilization system, such as ferric-vulnibactin receptor protein (VuuA), periplasmic ferric-vulnibactin binding protein (FatB), ferric-vulnibactin reductase (VuuB), and isochorismate synthase (ICS). ICS and VuuA are required under low-iron conditions for ferric-utilization in M2799, but the alternative proteins FatB and VuuB can function as a periplasmic binding protein and a ferric-chelate reductase, respectively. VatD, which functions as ferric-hydroxamate siderophores periplasmic binding protein, was shown to participate in the ferric-vulnibactin uptake system in the absence of FatB. Furthermore, the ferric-hydroxamate siderophore reductase IutB was observed to participate in ferric-vulnibactin reduction in the absence of VuuB. We propose that ferric-siderophore periplasmic binding proteins and ferric-chelate reductases represent potential targets for drug discovery in the context of infectious diseases.


Asunto(s)
Descubrimiento de Drogas , Hierro , Sideróforos , Hierro/metabolismo , Sideróforos/metabolismo , Humanos , Infecciones Bacterianas/tratamiento farmacológico , Infecciones Bacterianas/metabolismo , Terapia Molecular Dirigida , Ácidos Hidroxámicos/metabolismo , Proteínas de Unión a Hierro/metabolismo
2.
Biometals ; 37(2): 507-517, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38133869

RESUMEN

Siderophores are small-molecule iron chelators produced by many microorganisms that capture and uptake iron from the natural environment and host. Their biosynthesis in microorganisms is generally performed using non-ribosomal peptide synthetase (NRPS) or NRPS-independent siderophore (NIS) enzymes. Vibrio parahaemolyticus secretes its cognate siderophore vibrioferrin under iron-starvation conditions. Vibrioferrin is a dehydrated condensate composed of α-ketoglutarate, L-alanine, aminoethanol, and citrate, and pvsA (the gene encoding the ATP-grasp enzyme), pvsB (the gene encoding the NIS enzyme), pvsD (the gene encoding the NIS enzyme), and pvsE (the gene encoding decarboxylase) are engaged in its biosynthesis. Here, we elucidated the biosynthetic pathway of vibrioferrin through in vitro enzymatic reactions using recombinant PvsA, PvsB, PvsD, and PvsE proteins. We also found that PvsD condenses L-serine and citrate to generate O-citrylserine, and that PvsE decarboxylates O-citrylserine to form O-citrylaminoethanol. In addition, we showed that O-citrylaminoethanol is converted to alanyl-O-citrylaminoethanol by amidification with L-Ala by PvsA and that alanyl-O-citrylaminoethanol is then converted to vibrioferrin by amidification with α-ketoglutarate by PvsB.


Asunto(s)
Pirrolidinonas , Vibrio parahaemolyticus , Vibrio parahaemolyticus/genética , Vibrio parahaemolyticus/química , Vibrio parahaemolyticus/metabolismo , Vías Biosintéticas , Ácidos Cetoglutáricos/metabolismo , Hierro/metabolismo , Sideróforos/química , Citratos/metabolismo
3.
J Appl Microbiol ; 133(3): 2002-2013, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-35818769

RESUMEN

AIMS: The aims were to determine the effects of subinhibitory concentrations of eight cephem and carbapenem antibiotics on the biofilm formation of Acinetobacter baumannii cells and examine their effects on pre-established biofilms. METHODS AND RESULTS: Effects of antibiotics on biofilm formation were assayed using microtitre plates with polystyrene peg-lids. Cefmetazole, ceftriaxone, ceftazidime and cefpirome increased the biomass of pre-established biofilms on pegs in the range of their sub-minimum inhibitory concentrations (MICs), whereas none increased biofilm formation by planktonic cells. Carbapenems had a negative effect. The constituents of antibiotic-induced biofilms were analysed. Ceftriaxone or ceftazidime treatment markedly increased the matrix constituent amounts in the biofilms (carbohydrate, 2.7-fold; protein, 8.9-12.7-fold; lipid, 3.3-3.6-fold; DNA, 9.1-12.2-fold; outer membrane vesicles, 2.7-3.8-fold and viable cells, 6.8-10.1-fold). The antibiotic-enhanced biofilms had increased outer membrane protein A and were resistant to the anti-biofilm effect of azithromycin. CONCLUSIONS: Some cephems increased the biomass of pre-established biofilms in the ranges of their sub-MICs. The antibiotic-enhanced biofilms possessed more virulent characteristics than normal biofilms. SIGNIFICANCE AND IMPACT OF THE STUDY: Incomplete administration of certain cephems following biofilm-related Ac. baumannii infections could adversely cause exacerbated and chronic clinical results.


Asunto(s)
Acinetobacter baumannii , Antibacterianos/farmacología , Carbapenémicos/farmacología , Ceftazidima/farmacología , Ceftriaxona/farmacología , ADN , Matriz Extracelular de Sustancias Poliméricas
4.
Mar Drugs ; 19(12)2021 Dec 17.
Artículo en Inglés | MEDLINE | ID: mdl-34940709

RESUMEN

Vibrio vulnificus is a Gram-negative pathogenic bacterium that causes serious infections in humans and requires iron for growth. A clinical isolate, V. vulnificus M2799, secretes a catecholate siderophore, vulnibactin, that captures ferric ions from the environment. In the ferric-utilization system in V. vulnificus M2799, an isochorismate synthase (ICS) and an outer membrane receptor, VuuA, are required under low-iron conditions, but alternative proteins FatB and VuuB can function as a periplasmic-binding protein and a ferric-chelate reductase, respectively. The vulnibactin-export system is assembled from TolCV1 and several RND proteins, including VV1_1681. In heme acquisition, HupA and HvtA serve as specific outer membrane receptors and HupB is a sole periplasmic-binding protein, unlike FatB in the ferric-vulnibactin utilization system. We propose that ferric-siderophore periplasmic-binding proteins and ferric-chelate reductases are potential targets for drug discovery in infectious diseases.


Asunto(s)
Hierro/metabolismo , Vibrio vulnificus/metabolismo , Animales , Organismos Acuáticos , Iones , Proteínas de Unión Periplasmáticas/metabolismo , Vibrio vulnificus/genética
5.
Biol Pharm Bull ; 44(11): 1790-1795, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34719655

RESUMEN

Vibrio vulnificus can utilize the xenosiderophore desferrioxamine B (DFOB) as an iron source under iron-restricted conditions. We previously identified in V. vulnificus that transcription of the desA gene encoding the outer membrane receptor for ferrioxamine B (FOXB) is activated by the AraC-type transcriptional regulator encoded by desR together with DFOB. In this study, we overexpressed and purified DesR as a glutathione S-transferase-fused protein and examined interaction between the promoter region of desA and DesR. Electrophoretic mobility shift assay (EMSA) revealed that DesR directly binds to the regulatory region of desA, and this binding was enhanced by the presence of DFOB in a concentration-dependent manner, while the presence of FOXB did not affect the potentiation of their binding. Moreover, EMSA identified that DNA fragments lacking a probable DesR binding sequence were unable to form complexes with DesR. Finally, deoxyribonuclease I footprinting assay demonstrated that the DNA binding sequence of DesR is located between -27 and -50 nucleotides upstream of the desA transcription start site. These results strongly indicate that DesR can directly activate the transcription of desA in cooperation with DFOB, which acts as a coactivator for DesR.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/genética , Proteínas Bacterianas/metabolismo , Genes Bacterianos/genética , Receptores de Superficie Celular/genética , Factores de Transcripción/metabolismo , Vibrio vulnificus/metabolismo , Proteínas de la Membrana Bacteriana Externa/metabolismo , Ensayo de Cambio de Movilidad Electroforética , Regiones Promotoras Genéticas , Receptores de Superficie Celular/metabolismo
6.
Biochem Biophys Res Commun ; 585: 36-41, 2021 12 31.
Artículo en Inglés | MEDLINE | ID: mdl-34784549

RESUMEN

One of the histopathological features of Alzheimer's disease (AD) is higher order neurofibrillary tangles formed by abnormally aggregated tau protein. The sequence 275VQIINK280 in the microtubule-binding domain of tau plays a key role in tau aggregation. Therefore, an aggregation inhibitor targeting the VQIINK region in tau may be an effective therapeutic agent for AD. We have previously shown that the Fab domain (Fab2r3) of a tau antibody that recognizes the VQIINK sequence can inhibit tau aggregation, and we have determined the tertiary structure of the Fab2r3-VQIINK complex. In this report, we determined the tertiary structure of apo Fab2r3 and analyzed differences in the structures of apo Fab2r3 and Fab2r3-VQIINK to examine the ligand recognition mechanism of Fab2r3. In comparison with the Fab2r3-VQIINK structure, there were large differences in the arrangement of the constant and variable domains in apo Fab2r3. Remarkable structural changes were especially observed in the H3 and L3 loop regions of the complementarity determining regions (CDRs) in apo Fab2r3 and the Fab2r3-VQIINK complex. These structural differences in CDRs suggest that formation of hydrophobic pockets suitable for the antigen is important for antigen recognition by tau antibodies.


Asunto(s)
Enfermedad de Alzheimer/metabolismo , Secuencias de Aminoácidos , Anticuerpos Monoclonales/metabolismo , Agregado de Proteínas , Agregación Patológica de Proteínas/metabolismo , Proteínas tau/metabolismo , Secuencia de Aminoácidos , Anticuerpos Monoclonales/química , Regiones Determinantes de Complementariedad/química , Regiones Determinantes de Complementariedad/metabolismo , Cristalografía por Rayos X , Humanos , Fragmentos Fab de Inmunoglobulinas/química , Fragmentos Fab de Inmunoglobulinas/metabolismo , Modelos Moleculares , Ovillos Neurofibrilares/química , Ovillos Neurofibrilares/metabolismo , Unión Proteica , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Proteínas tau/química , Proteínas tau/inmunología
7.
Biomed Res ; 41(6): 259-268, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-33268670

RESUMEN

Recently, opportunistic nosocomial infections caused by Acinetobacter baumannii have become increasingly prevalent worldwide. The pathogen often establishes biofilms that adhere to medical devices, causing chronic infections refractory to antimicrobial therapy. Clinical reports have indicated that some macrolide antibiotics are effective against chronic biofilm-related infections. In this study, we examined the direct anti-biofilm effects of seven macrolides (azithromycin, clarithromycin, erythromycin, josamycin, spiramycin, fidaxomicin, and ivermectin) on A. baumannii using a simple and newly established in vitro assay system for the swift and serial spectrophotometric determinations of two biofilm-amount indexes of viability and biomass. These macrolides were found to possess direct anti-biofilm effects exerting specific anti-biofilm effects not exclusively depending on their bacteriostatic/bactericidal effects. The anti-biofilm effect of azithromycin was found to be the strongest, while those of fidaxomicin and ivermectin were weak and limited. These results provide insights into possible adjunctive chemotherapy with macrolides for A. baumannii infection. Common five macrolides also interfered with the Agrobacterium tumefaciens NTL(pCF218) (pCF372) bioassay system of N-acyl homoserine lactones, providing insights into sample preparation for the bioassay, and putatively suggesting the actions of macrolides as remote signals in bacterial quorum sensing systems.


Asunto(s)
Acinetobacter baumannii/efectos de los fármacos , Acil-Butirolactonas/antagonistas & inhibidores , Antibacterianos/farmacología , Biopelículas/efectos de los fármacos , Percepción de Quorum/efectos de los fármacos , Infecciones por Acinetobacter/tratamiento farmacológico , Infecciones por Acinetobacter/microbiología , Acinetobacter baumannii/crecimiento & desarrollo , Acinetobacter baumannii/metabolismo , Acil-Butirolactonas/metabolismo , Agrobacterium tumefaciens/efectos de los fármacos , Agrobacterium tumefaciens/crecimiento & desarrollo , Agrobacterium tumefaciens/metabolismo , Azitromicina/farmacología , Biopelículas/crecimiento & desarrollo , Bioensayo , Claritromicina/farmacología , Eritromicina/farmacología , Fidaxomicina/farmacología , Humanos , Ivermectina/farmacología , Josamicina/farmacología , Pruebas de Sensibilidad Microbiana , Viabilidad Microbiana/efectos de los fármacos , Espiramicina/farmacología
8.
Biometals ; 33(4-5): 187-200, 2020 10.
Artículo en Inglés | MEDLINE | ID: mdl-32681432

RESUMEN

Vibrio vulnificus, a pathogenic bacterium that causes serious infections in humans, requires iron for growth. Clinical isolate, V. vulnificus M2799, secretes a catecholate siderophore, namely, vulnibactin, to capture iron (III) from the environment. Growth experiments using a deletion mutant indicated that VuuB, a member of the FAD-containing siderophore-interacting protein family, plays a crucial role in Fe3+-vulnibactin reduction. IutB, a member of the ferric-siderophore reductase family, stands a substitute for VuuB in its absence. It remained unclear why V. vulnificus M2799 has two proteins with relevant functions. Here we biochemically characterized VuuB and IutB using purified recombinant proteins. Purified VuuB, a flavoprotein, catalyzed the reduction of Fe3+-nitrilotriacetic acid as its electron acceptor, in the presence of NADH as its electron donor and FAD as its cofactor. IutB catalyzed the reduction of Fe3+-nitrilotriacetic acid, in the presence of NADH, NADPH, or reduced glutathione as its electron donor. The optimal pH values and temperatures of VuuB and IutB were 7.0 and 37 °C, and 8.5 and 45 °C, respectively. On analyzing their ferric-chelate reductase activities, both VuuB and IutB were found to catalyze the reduction of Fe3+-aerobactin, Fe3+-vibriobactin, and Fe3+-vulnibactin. When the biologically relevant substrate, Fe3+-vulnibactin, was used, the levels of ferric-chelate reductase activities were similar between VuuB and IutB. Finally, the mRNA levels were quantified by qRT-PCR in M2799 cells cultivated under low-iron conditions. The number of vuuB mRNA was 8.5 times greater than that of iutB. The expression ratio correlated with the growth of their mutants in the presence of vulnibactin.


Asunto(s)
Amidas/metabolismo , FMN Reductasa/metabolismo , Compuestos Férricos/metabolismo , Flavoproteínas/metabolismo , Oxazoles/metabolismo , Vibrio vulnificus/metabolismo , Amidas/química , FMN Reductasa/genética , Compuestos Férricos/química , Flavoproteínas/genética , Oxazoles/química , Vibrio vulnificus/citología
9.
FEBS Lett ; 2020 Apr 13.
Artículo en Inglés | MEDLINE | ID: mdl-32282060

RESUMEN

Neurofibrillary tangles formed by abnormally aggregated tau protein are a histopathological feature of tauopathies. A tau aggregation inhibitor is a potential therapeutic agent for tauopathies. In this study, we prepared a monoclonal antibody for tau, monoclonal antibody to tau protein (Tau2r3), using as epitope the 272 GGKVQIINKKLD283 peptide in the microtubule-binding domain of tau, the key region mediating tau aggregation. We show that Tau2r3 clearly inhibits tau aggregation. To analyze the inhibition mechanism of Tau2r3, we solved the crystal structure of the Fab domain of Tau2r3 (Fab2r3) in complex with the VQIINK peptide. In the Fab2r3-VQIINK structure, the second and sixth polar residues and the fourth hydrophobic residue of VQIINK are crucial for binding to Fab2r3. The structural data for the Fab2r3-VQIINK complex could contribute to the design of new tau aggregation inhibitors.

10.
FEMS Microbiol Lett ; 365(20)2018 10 01.
Artículo en Inglés | MEDLINE | ID: mdl-30203068

RESUMEN

We found that Vibrio furnissii can utilize aerobactin (AERO) as a xenosiderophore. A homology search of its genome revealed that this bacterium possesses genes encoding an AERO-mediated iron acquisition system similar to that of V. vulnificus. The system consists of the ABC transporter gene vatCDB, the GntR-type transcriptional repressor gene iutR, and the outer membrane receptor gene iutA. The functions of the vatCDB operon and iutA in V. furnissii were confirmed by the inability of the corresponding deletion mutants to utilize AERO. Reverse transcription-quantitative PCR revealed that iutA transcription under iron-limiting conditions was extensively activated by the addition of AERO to the growth medium; therefore, we focused on elucidating this phenomenon. Electrophoretic mobility shift and DNase I footprinting assays revealed that glutathione S-transferase-fused IutR (GST-IutR) bound directly to a specific palindromic sequence in the iutA promoter region. However, GST-IutR did not bind to this sequence when either AERO or ferric AERO was present in the assay mixture. These in vitro findings suggest that, under iron-limiting conditions, iutA transcription in V. furnissii is artfully regulated both by IutR, acting as a direct repressor of iutA, and by AERO, acting as an effector for IutR, leading to the derepression of iutA transcription.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/biosíntesis , Regulación Bacteriana de la Expresión Génica , Proteínas Represoras/metabolismo , Transcripción Genética , Vibrio/genética , Proteínas de la Membrana Bacteriana Externa/genética , Medios de Cultivo/química , Eliminación de Gen , Perfilación de la Expresión Génica , Ácidos Hidroxámicos/metabolismo , Operón , Reacción en Cadena en Tiempo Real de la Polimerasa , Proteínas Represoras/genética , Vibrio/crecimiento & desarrollo , Vibrio/metabolismo
11.
Microb Pathog ; 117: 100-108, 2018 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-29432914

RESUMEN

Vibrio vulnificus, the causative agent of serious, often fatal, infections in humans, requires iron for its pathogenesis. As such, it obtains iron via both vulnibactin and heme-mediated iron-uptake systems. In this study, we identified the heme acquisition system in V. vulnificus M2799. The nucleotide sequences of the genes encoding heme receptors HupA and HvtA and the ATP-binding cassette (ABC) transport system proteins HupB, HupC, and HupD were determined, and then used in the construction of deletion mutants developed from a Δics strain, which could not synthesize vulnibactin. Growth experiments using these mutants indicated that HupA and HvtA are major and minor heme receptors, respectively. The expressions of two proteins were analyzed by the quantitative reverse-transcriptase polymerase chain reaction (qRT-PCR). Furthermore, complementation analyses confirmed that the HupBCD proteins are the only ABC transport system shared by both the HupA and HvtA receptors. This is the first genetic evidence that the HupBCD proteins are essential for heme acquisition by V. vulnificus. Further investigation showed that hupA, hvtA, and hupBCD are regulated by Fur. The qRT-PCR analysis of the heme receptor genes revealed that HupR, a LysR-family positive transcriptional activator, upregulates the expression of hupA, but not hvtA. In addition, ptrB was co-transcribed with hvtA, and PtrB had no influence on growth in low-iron CM9 medium supplemented with hemin, hemoglobin, or cytochrome C.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/metabolismo , Proteínas Bacterianas/metabolismo , Proteínas Portadoras/metabolismo , Hierro/metabolismo , Factores de Transcripción/metabolismo , Vibrio vulnificus/metabolismo , Transportadoras de Casetes de Unión a ATP/genética , Transportadoras de Casetes de Unión a ATP/metabolismo , Amidas/metabolismo , Proteínas de la Membrana Bacteriana Externa/genética , Proteínas Bacterianas/genética , Secuencia de Bases , Proteínas Portadoras/genética , Grupo Citocromo b/genética , Citocromos c/metabolismo , ADN Bacteriano , Perfilación de la Expresión Génica , Regulación Bacteriana de la Expresión Génica , Genes Bacterianos/genética , Hemina/metabolismo , Hemoglobinas/metabolismo , Humanos , Hidrogenasas/genética , Transferasas Intramoleculares/metabolismo , Metaloendopeptidasas/metabolismo , Oxazoles/metabolismo , Proteínas de Unión Periplasmáticas/genética , Proteínas de Unión Periplasmáticas/metabolismo , Proteínas Represoras/genética , Proteínas Represoras/metabolismo , Análisis de Secuencia , Eliminación de Secuencia , Factores de Transcripción/genética , Transcripción Genética , Vibrio vulnificus/genética , Vibrio vulnificus/crecimiento & desarrollo
12.
Biometals ; 30(2): 203-216, 2017 04.
Artículo en Inglés | MEDLINE | ID: mdl-28150143

RESUMEN

Vibrio vulnificus, an opportunistic pathogen that causes a serious, often fatal, infection in humans, requires iron for its growth. This bacterium utilizes iron from the environment via the vulnibactin-mediated iron uptake system. The mechanisms of vulnibactin biosynthesis, vulnibactin export, and ferric-vulnibactin uptake systems have been reported, whereas the ferric-vulnibactin reduction mechanism in the cell remains unclear. The results of our previous study showed that VuuB, a member of the flavin adenine dinucleotide-containing siderophore-interacting protein family, is a ferric-vulnibactin reductase, but there are other reductases that can complement for the defective vuuB. The aim of this study was to identify these proteins that can complement the loss of function of VuuB. We constructed mutants of genes encoding putative reductases in V. vulnificus M2799, and analyzed their growth under low-iron conditions. Complementation analyses confirmed that IutB, which functions as a ferric-aerobactin reductase, participates in ferric-vulnibactin reduction in the absence of VuuB. This is the first genetic evidence that ferric-vulnibactin is reduced by a member of the ferric-siderophore reductase protein family. In the aerobactin-utilization system, IutB plays a major role in ferric-aerobactin reduction in V. vulnificus M2799, and VuuB and DesB can compensate for the defect of IutB. Furthermore, the expression of iutB and desB was found to be regulated by iron and a ferric uptake regulator.


Asunto(s)
Amidas/metabolismo , Proteínas Bacterianas/metabolismo , Regulación Bacteriana de la Expresión Génica , Hierro/metabolismo , Oxazoles/metabolismo , Oxidorreductasas/metabolismo , Sideróforos/metabolismo , Vibrio vulnificus/metabolismo , Amidas/química , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Clonación Molecular , Deferoxamina/química , Deferoxamina/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Prueba de Complementación Genética , Vectores Genéticos/química , Vectores Genéticos/metabolismo , Ácidos Hidroxámicos/química , Ácidos Hidroxámicos/metabolismo , Mutación , Oxazoles/química , Oxidación-Reducción , Oxidorreductasas/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Homología de Secuencia de Aminoácido , Sideróforos/química , Vibrio vulnificus/genética
13.
J Biochem ; 161(6): 493-501, 2017 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-28130416

RESUMEN

BxlE from Streptomyces thermoviolaceus OPC-520 is a xylo-oligosaccharide (mainly xylobiose)-binding protein that serves as the initial receptor for the bacterial ABC-type xylo-oligosaccharide transport system. To determine the ligand-binding mechanism of BxlE, X-ray structures of ligand-free (open form) and ligand (xylobiose)-bound (closed form) BxlE were determined at 1.85 Å resolution. BxlE consists of two globular domains that are linked by two ß-strands, with the cleft at the interface of the two domains creating the ligand-binding pocket. In the ligand-free open form, this pocket consists of a U-shaped and negatively charged groove located between the two domains. In the xylobiose-bound closed form of BxlE, both the N and C domains move to fold the ligand without conformational changes in either domain. Xylobiose is buried in the groove and wrapped by the N-domain mainly via hydrogen bond interactions and by the C-domain primarily via non-polar interactions with Trp side chains. In addition to the concave shape matching the binding of xylobiose, an inter-domain salt bridge between Asp-47 and Lys-294 limits the space in the ligand-binding site. This domain-stabilized mechanism of ligand binding to BxlE is a unique feature that is not observed with other solute-binding proteins.


Asunto(s)
Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Disacáridos/química , Disacáridos/metabolismo , Streptomyces/química , Proteínas Bacterianas/aislamiento & purificación , Calorimetría , Cristalografía por Rayos X , Modelos Moleculares
14.
FEMS Microbiol Lett ; 362(21)2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26394644

RESUMEN

The cytotoxicity of Vibrio parahaemolyticus has been related to the type III secretion system 1 effector protein VP1680, which is secreted and translocated into host cells with the help of the specific chaperone protein, VP1682. This study sought to confirm the in silico analysis, which predicted that a small regulatory RNA (Spot 42) could base pair with the region encompassing the ribosomal-binding site and initiation codon of the vp1682 mRNA. Electrophoresis mobility shift assays indicated that Spot 42 could bind to the vp1682 mRNA with the help of Hfq. Consistent with these results, the translation of the vp1682 mRNA was inhibited when both Hfq and Spot 42 were added to the in vitro translation reaction. The cytotoxic activity against infected Caco-2 cells was significantly increased in the Spot 42 deletion mutant (Δspf) at 4 h after infection as compared with the parental strain. Additionally, we observed that both VP1682 and VP1680 were more highly expressed in Δspf mutants than in the parental strain. These results indicate that Spot 42 post-transcriptionally regulates the expression of VP1682 in V. parahaemolyticus, which contributes to cytotoxicity in vivo.


Asunto(s)
Chaperonas Moleculares/genética , ARN Pequeño no Traducido/genética , ARN Pequeño no Traducido/metabolismo , Sistemas de Secreción Tipo III/química , Sistemas de Secreción Tipo III/genética , Vibrio parahaemolyticus/genética , Vibrio parahaemolyticus/metabolismo , Células CACO-2 , Ensayo de Cambio de Movilidad Electroforética , Regulación Bacteriana de la Expresión Génica , Proteína de Factor 1 del Huésped/genética , Proteína de Factor 1 del Huésped/metabolismo , Humanos , Chaperonas Moleculares/metabolismo , Transporte de Proteínas/genética , ARN Mensajero/genética , ARN Mensajero/metabolismo , Eliminación de Secuencia
15.
Acta Crystallogr F Struct Biol Commun ; 71(Pt 8): 1078-82, 2015 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-26249703

RESUMEN

Vibrio vulnificus is a halophilic marine microorganism which causes gastroenteritis and primary septicaemia in humans. An important factor that determines the survival of V. vulnificus in the human body is its ability to acquire iron. VatD is a periplasmic siderophore-binding protein from V. vulnificus M2799. The current study reports the expression, purification and crystallization of VatD. Crystals of both apo VatD and a VatD-desferrioxamine B-Fe(3+) (VatD-FOB) complex were obtained. The crystal of apo VatD belonged to space group P6422, while the crystal of the VatD-FOB complex belonged to space group P21. The difference in the two crystal forms could be caused by the binding of FOB to VatD.


Asunto(s)
Proteínas Bacterianas/química , Periplasma/química , Proteínas de Unión Periplasmáticas/química , Proteínas Recombinantes de Fusión/química , Vibrio vulnificus/química , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Clonación Molecular , Cristalización , Cristalografía por Rayos X , Deferoxamina/química , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Hierro/química , Datos de Secuencia Molecular , Periplasma/metabolismo , Proteínas de Unión Periplasmáticas/genética , Unión Proteica , Proteínas Recombinantes de Fusión/genética , Alineación de Secuencia , Sideróforos/química , Vibrio vulnificus/metabolismo
16.
Biosci Biotechnol Biochem ; 78(10): 1777-87, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25273145

RESUMEN

We found that, under iron-limiting conditions, Aeromonas hydrophila ATCC 7966(T) could utilize the xenosiderophore desferrioxamine B (DFOB) for growth by inducing the expression of its own outer membrane receptor. Two consecutive genes, desR and desA, were selected as candidates involved in DFOB utilization. The presence of the ferric-uptake regulator boxes in their promoters suggested that these genes are under iron-dependent regulation. Mutation of desA, a gene that encodes the outer membrane receptor of ferrioxamine B, disrupted the growth of the amonabactin-deficient mutant in the presence of DFOB. ß-Galactosidase reporter assays and reverse transcriptase-quantitative PCR demonstrated that desR, a gene that encodes an AraC-like regulator homolog is required for the induction of desA transcription in the presence of DFOB and under iron-limiting conditions. The functions of desA and desR were analyzed using complementation experiments. Our data provided evidence that DesA is powered primarily by the TonB2 system.


Asunto(s)
Aeromonas hydrophila/genética , Aeromonas hydrophila/metabolismo , Factor de Transcripción de AraC/genética , Factor de Transcripción de AraC/metabolismo , Proteínas de la Membrana Bacteriana Externa/genética , Proteínas de la Membrana Bacteriana Externa/metabolismo , Deferoxamina/metabolismo , Compuestos Férricos/metabolismo , Secuencia de Aminoácidos , Factor de Transcripción de AraC/química , Metabolismo Energético , Hierro/metabolismo , Familia de Multigenes/genética , Operón/genética , Fenotipo , Eliminación de Secuencia , Especificidad por Sustrato , Transcripción Genética
17.
Microb Pathog ; 75: 59-67, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-25205089

RESUMEN

Vibrio vulnificus, an opportunistic marine bacterium that causes a serious, often fatal, infection in humans, requires iron for its pathogenesis. This bacterium exports vulnibactin for iron acquisition from the environment. The mechanisms of vulnibactin biosynthesis and ferric-vulnibactin uptake systems have recently been reported, while the vulnibactin export system has not been reported. Mutant growth under low-iron concentration conditions and a bioassay of the culture supernatant indicate that the VV1_0612 protein plays a crucial role in the vulnibactin secretion as a component of the resistance-nodulation-division (RND)-type efflux system in V. vulnificus M2799. To identify which RND protein(s) together with VV1_0612 TolC constituted the RND efflux system for vulnibactin secretion, deletion mutants of 11 RND protein-encoding genes were constructed. The growth inhibition of a multiple mutant (Δ11) of the RND protein-encoding genes was observed 6 h after the beginning of the culture. Furthermore, ΔVV1_1681 exhibited a growth curve that was similar to that of Δ11, while the multiple mutant except ΔVV1_1681 showed the same growth as the wild-type strain. These results indicate that the VV1_1681 protein is involved in the vulnibactin export system of V. vulnificus M2799. This is the first genetic evidence that vulnibactin is secreted through the RND-type efflux systems in V. vulnificus.


Asunto(s)
Amidas/metabolismo , Proteínas de Transporte de Membrana/metabolismo , Oxazoles/metabolismo , Vibrio vulnificus/metabolismo , Medios de Cultivo/química , Análisis Mutacional de ADN , ADN Bacteriano/química , ADN Bacteriano/genética , Eliminación de Gen , Proteínas de Transporte de Membrana/genética , Datos de Secuencia Molecular , Análisis de Secuencia de ADN , Vibrio vulnificus/genética , Vibrio vulnificus/crecimiento & desarrollo
18.
PLoS One ; 9(8): e105749, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25148374

RESUMEN

A pvsB-vctA-irgA triple deletion mutant of Vibrio parahaemolyticus can utilize enterobactin under iron-limiting conditions by inducing a previously undescribed receptor, PeuA (VPA0150), in response to extracellular alkaline pH and enterobactin. In silico analyses revealed the existence of a two-component regulatory system operon, peuRS, immediately upstream of peuA, which constitutes an operon with the TonB2 system genes. Both the peuRS and peuA-tonB2 operons were found to be upregulated under iron-limiting conditions in a ferric uptake regulator (Fur)-dependent manner. The involvement of peuA and peuRS in enterobactin utilization was analyzed by complementation experiments using deletion mutants. Primer extension analysis indicated that, under iron-limiting conditions, the transcription of peuA was initiated from the +1 site at pH 7.0 and from both the +1 and +39 sites at pH 8.0 in the presence of enterobactin. The +39 transcript was absent from the peuRS deletion mutant. Secondary structure prediction of their 5'-untranslated regions suggested that translation initiation is blocked in the +1 transcript, but not in the +39 transcript. Consistent with this, in vitro translation analysis demonstrated that production of PeuA was determined only by the +39 transcript. These studies establish a novel gene regulation mechanism in which the two-component regulatory system PeuRS enhances expression of the alternative +39 transcript that possesses non-inhibitory structure, allowing the peuA expression to be regulated at the translation stage.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/biosíntesis , Proteínas Portadoras/biosíntesis , Regulación Bacteriana de la Expresión Génica/fisiología , Receptores de Superficie Celular/biosíntesis , Transcripción Genética/fisiología , Vibrio parahaemolyticus/metabolismo , Proteínas de la Membrana Bacteriana Externa/genética , Proteínas Portadoras/genética , Concentración de Iones de Hidrógeno , Operón/fisiología , Receptores de Superficie Celular/genética , Vibrio parahaemolyticus/genética
19.
Microb Pathog ; 65: 73-81, 2013 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-24135791

RESUMEN

Vibrio vulnificus, an opportunistic marine bacterium that causes a serious, often fatal, infection in humans, requires iron for its pathogenesis. This bacterium uses iron from the environment via the vulnibactin-mediated-iron-uptake system. In this study, we constructed the deletion mutants of the genes encoding the proteins involved in the vulnibactin-mediated-iron-uptake system, isochorismate synthase (ICS), vulnibactin utilization protein (VuuB), periplasmic ferric-vulnibactin binding protein (FatB), and ferric-vulnibactin receptor protein (VuuA). The Δics and ΔvuuA mutants were unable to grow under low-iron concentration conditions compared with the isogenic wild-type, indicating that the involvement of ICS in the vulnibactin biosynthesis pathway and uptake of ferric-vulnibactin through the VuuA receptor protein are essential for V. vulnificus M2799 growth under low-iron concentration conditions. Similar growth impairment was also observed in ΔfatB, with growth recovery of this mutant observed 6 h after the beginning of the culture. These results indicate that there must be other periplasmic ferric-vulnibactin binding proteins in V. vulnificus M2799 that complement the defective fatB gene. Complementary growth studies confirmed that VatD protein, which functions as a periplasmic ferric-aerobactin binding protein, was found to participate in the ferric-vulnibactin uptake system in the absence of FatB. Furthermore, the expression of ics, vuuB, fatB, vuuA, and vatD genes was found to be regulated by iron and the ferric uptake regulator.


Asunto(s)
Acetiltransferasas/metabolismo , Amidas/metabolismo , Proteínas de Transporte de Membrana/metabolismo , Oxazoles/metabolismo , Proteínas Periplasmáticas/metabolismo , Vibrio vulnificus/metabolismo , Acetiltransferasas/genética , Proteínas de la Membrana Bacteriana Externa/genética , Proteínas de la Membrana Bacteriana Externa/metabolismo , Secuencia de Bases , Proteínas Portadoras/genética , Proteínas Portadoras/metabolismo , Ácidos Hidroxámicos/metabolismo , Hierro/metabolismo , Proteínas de Transporte de Membrana/genética , Pruebas de Sensibilidad Microbiana , Datos de Secuencia Molecular , Proteínas Periplasmáticas/genética , Unión Proteica/genética , Eliminación de Secuencia/genética , Sideróforos/metabolismo , Vibriosis/tratamiento farmacológico , Vibriosis/genética , Vibrio vulnificus/genética
20.
Biosci Biotechnol Biochem ; 77(2): 353-60, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23391908

RESUMEN

Aeromonas hydrophila ATCC 7966(T) produces a catecholate siderophore amonabactin in response to iron starvation. In this study, we determined that this strain utilizes exogenously supplied enterobactin (Ent) for growth under iron-limiting conditions. A homology search of the A. hydrophila ATCC 7966(T) genomic sequence revealed the existence of a candidate gene encoding a protein homologous to Vibrio parahaemolyticus IrgA that functions as the outer membrane receptor for ferric Ent. SDS-PAGE showed induction of IrgA under iron-limiting conditions. The growth of the double mutant of irgA and entA (one of the amonabactin biosynthetic genes) was restored when it was complemented with irgA in the presence of Ent. Moreover, a growth assay of three isogenic tonB mutants indicated that the tonB2 system exclusively provides energy for IrgA to transport ferric Ent. Finally, reverse transcriptase-quantitative PCR revealed that the transcription of irgA and the TonB2 system cluster genes is iron-regulated, consistently with the presence of a predicted Fur box in the promoter region.


Asunto(s)
Aeromonas hydrophila/genética , Proteínas de la Membrana Bacteriana Externa/genética , Proteínas Bacterianas/genética , Enterobactina/metabolismo , Regulación Bacteriana de la Expresión Génica , Hierro/metabolismo , Receptores de Superficie Celular/genética , Aeromonas hydrophila/metabolismo , Secuencia de Aminoácidos , Proteínas de la Membrana Bacteriana Externa/metabolismo , Proteínas Bacterianas/metabolismo , Secuencia de Bases , Transporte Biológico , Prueba de Complementación Genética , Proteínas de la Membrana/genética , Proteínas de la Membrana/metabolismo , Datos de Secuencia Molecular , Oxidorreductasas actuantes sobre Donantes de Grupo CH-CH/genética , Oxidorreductasas actuantes sobre Donantes de Grupo CH-CH/metabolismo , Regiones Promotoras Genéticas , Receptores de Superficie Celular/metabolismo , Homología de Secuencia de Aminoácido , Vibrio cholerae/genética , Vibrio cholerae/metabolismo , Vibrio parahaemolyticus/genética , Vibrio parahaemolyticus/metabolismo
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