A credit-like rating system to determine the legitimacy of scientific journals and publishers.

The predatory nature of a journal is in constant debate because it depends on multiple factors, which keep evolving. The classification of a journal as being predatory, or not, is no longer exclusively associated with its open access status, by inclusion or exclusion on perceived reputable academic indexes and/or on whitelists or blacklists. Inclusion in the latter may itself be determined by a host of criteria, may be riddled with type I errors (e.g., erroneous inclusion of a truly predatory journal in a whitelist) and/or type II errors (e.g., erroneous exclusion of a truly valid scholarly journal in a whitelist). While extreme cases of predatory publishing behavior may be clear cut, with true predatory journals displaying ample predatory properties, journals in non-binary grey zones of predatory criteria are difficult to classify. They may have some legitimate properties, but also some illegitimate ones. In such cases, it might be too extreme to refer to such entities as "predatory". Simply referring to them as "potentially predatory" or "borderline predatory" also does little justice to discern a predatory entity from an unscholarly, low-quality, unprofessional, or exploitative one. Faced with the limitations caused by this gradient of predatory dimensionality, this paper introduces a novel credit-like rating system, based in part on well-known financial credit ratings companies used to assess investment risk and creditworthiness, to assess journal or publisher quality. Cognizant of the weaknesses and criticisms of these rating systems, we suggest their use as a new way to view the scholarly nature of a journal or publisher. When used as a tool to supplement, replace, or reinforce current sets of criteria used for whitelists and blacklists, this system may provide a fresh perspective to gain a better understanding of predatory publishing behavior. Our tool does not propose to offer a definitive solution to this problem.

Contribution of Iranian scholars to medical sciences: A holistic overview of 140-years publication.

Background: This study investigated the trends in the scientific output of Iran published in PubMed indexed journals. To the best of our knowledge, there was no previous study to examine the Iranian scientific output in all fields of health and biomedical sciences. Methods: Using a bibliometric approach, we tracked 140 years (between 1877 and 2016) of Iranian scientific productions in PubMed. The journals which papers widely published over them were analyzed. The metadata of journals was extracted from Web of Science (WoS), Scopus, and Scimago Journal & Country Rank. The Gross Domestic Product (GDP) data was elaborated from the World Bank to evaluate the relationship with research output. We used Pearson's correlation coefficient at p<0.01 significance level and reported the data in a scatterplot. Results: We identified 106 226 documents produced by Iranian authors in journals indexed in PubMed since 1877. The number of papers climbed dramatically in 2000 and afterward, and this was consistent with the country's GDP. Although the scientific contribution of Iranian researchers is remarkable, 67% of papers (26 978 out of 106 226) were published in local Journals categorized into quartile 3 and 4 of WoS and Scopus. The study shows that GDP growth has had a positive influence on publication output (r=0.738, p<0.001). Conclusion: This is the first study with a panorama view of Iran's contribution to biomedical literature. Based on the results of our survey, although the number of Iranian publications rose over time but they are mostly published in low ranked journals. Health policy-makers advise reconsidering the criteria for measuring research activities. Improving policies will help researchers to publish in higher ranked journals.

Scientific impact of Iran University of Medical Sciences researchers in ResearchGate, Google Scholar, and Scopus: An altmetrics study.

Background: The emergence of web 2.0 and development of social media have strongly affected sharing, collaborating, connecting, and evaluating in academic setting. This study aimed to provide a clear image of faculty members' activities at Iran University of Medical Sciences (IUMS) and the way they communicate with the academic world in ResearchGate (RG). Methods: In this altmetrics study, we surveyed the presence and activity of IUMS faculty members in RG and compared the data with those derived from Google Scholar and Scopus. The Spearman's correlation coefficient was used to detect the correlation between RG variables and the 2 mentioned databases. The significance level was set at α = 0.01. Data were statistically analyzed using the Microsoft Excel 2013 and SPSS 22.0 software. Results: The results demonstrated 439 (45%) faculty members of IUMS had RG profiles, and the School of Medicine with 287 researchers had the largest contribution. Overall, 14 971 documents were shared, 91% of which were journal articles. The average RG score was 15.26 ± 9.28, of which 94% was acquired from publications. This indicates a positive and strong correlation between RG variables and Scopus and Google Scholar indicators, while the RG indicators were more correlated with Google Scholar than Scopus. Conclusion: Due to the essential role of self-archiving in the visibility, citation rate, and creation of further international collaborations, it is recommended that Iranian scholars consider using the Academic Social Networks like RG to enhance their online international contributions.

Epidemiologic and clinical findings of children with acquired immunodeficiency syndrome in four provinces of Iran.

INTRODUCTION: The human immunodeficiency virus (HIV) is still a remarkable challenge throughout the world, especially in developing countries. Despite the fact that HIV in children is becoming one of the most challenging diseases, it seems that pediatric AIDS in Iran is an unknown disease and there is a lack of studies about it. The aim of this study was to describe the characteristics of HIV-positive children who referred to the hospitals of Tehran, Kermanshah, Kurdistan, and Qom provinces of Iran. MATERIALS AND METHODS: This study was a retrospective investigation of medical records among 61 children with a diagnosis of HIV who were admitted to the children's hospitals in the four provinces of Iran during a 3-year period (2013-2016). RESULTS: The frequency of HIV in the center of Iran (Tehran and Qom provinces) was higher (N = 37, 61%). Most of the infected patients were between 5 and 15 years old, 52% were male, and 93% had a history of HIV in their family. Median age at diagnosis of HIV was 2 years. Most of the hospitalized patients were discharged and only two patients (3%) died due to HIV infection. The vast majority of patients (93%) were infected through maternal transmission and a low percentage (29%) were diagnosed before 1 year of age. All of them were in the third stage of the disease. All patients had a positive HIV PCR test. HIV EIA was positive in the majority of cases (98%). A history of addiction in the family was demonstrated in 22 cases (36%). Weight loss (N = 51, 84%), prolonged fever (N = 50, 81%), and respiratory infection (N = 26, 47%) were the most common symptoms. CONCLUSION: This study demonstrated a high frequency of pediatric HIV among children aged 5-15 years in four provinces of Iran. Novel strategies to prevent and eliminate mother-to-child transmission of HIV, diagnostic facilities, and treatment of infected mothers during pregnancy in our country are highly recommended.

Clinical and Epidemiologic Features of Visceral Leishmaniasis in Children: A 6-year Study from an Iranian Referral Hospital.

BACKGROUND: Visceral leishmaniasis (VL) is an emerging zoonosis disease that is endemic in the northwestern and southern part of Iran. This study aimed to evaluate the clinical characteristics and laboratory findings of the children with VL hospitalized at Children Medical Center Hospital (CMC), Tehran, Iran. METHODS: A retrospective study was performed based on studied medical records of children with a final diagnosis of VL from 2011 to 2016. For each patient's demographics, clinical laboratory findings and treatment were examined. RESULTS: The clinical features of 17 children were examined and the most frequent symptoms were fever (94.1%, n=16), pallor, loss of appetite (76.5%, n=13), splenomegaly (82.4%, n=14) and hepatomegaly (58.8%, n=10). The most frequent laboratory abnormalities were hematological including anemia (94.1%, n=16), leukopenia (52.9%, n=9) and thrombocytopenia (70.5%, n=12). In order to detect anti-Leishmania antibodies, DAT was performed in 11 patients and 82% of them were positive (titers ≥ 1: 3200). In addition, rK39 was used in 9 cases and 7 children (78%) had positive results. Direct parasitology revealed the presence of amastigotes of Leishmania in bone marrow aspirate (BMA) stained by Giemsa stain in 9 patients (69%, among 13 children). CONCLUSION: Leishmaniasis is a regional disease therefore management and control of disease, particularly in an endemic area, as well as detection of new emerging foci are recommended.

Prevalence of active tuberculosis infection in transplant recipients: A systematic review and meta-analysis.

INTRODUCTION: Tuberculosis (TB) is considered as a serious complication of organ transplant; therefore, the detection and appropriate treatment of active TB infection is highly recommended for the reduction of mortality in the future. The aim of this review was to conduct a systematic review and meta-analysis assessing the prevalence of active TB infection in transplant recipients (TRs). MATERIAL AND METHODS: Electronic databases, including MEDLINE (via PubMed), SCOPUS and Web of Science were searched up to December 24, 2017. The prevalence of active TB was estimated using the random effects meta-analysis. Heterogeneity was evaluated by subgroup analysis. Data were analyzed by STATA version 14. RESULTS: The pooled prevalence of post-transplant active TB was estimated 3% [95% CI: 2-3]. The pooled prevalence of active TB in different transplant forms was as follows: renal,3% [95% CI: 2-4]; stem cell transplant (SCT), 1% [95% CI: 0-3]; lung, 4% [95% CI: 2-6]; heart, 3% [95% CI: 2-4]; liver, 1% [95% CI: 1], and hematopoietic stem cell transplant (HSCT), 2% [95% CI: 1-3]. The prevalence of different clinical presentations of TB was as follows: pulmonary TB (59%; 95% CI: 54-65), extra pulmonary TB (27%; 95% CI: 21-33), disseminated TB (15%; 95% CI: 12-19) and miliary TB (8%; 95% CI: 4-13). The pooled prevalence of different diagnostic tests was as follows: chest X-ray, 57% [95% CI, 46-67]; culture, 56% [95% CI, 45-68]; smear, 49% [95% CI, 40-58]; PCR, 43% [95% CI, 40-58]; histology, 26% [95% CI, 20-32], and tuberculin skin test, 19% [95% CI, 10-28]. CONCLUSION: A high suspicion level for TB, the early diagnosis and the prompt initiation of therapy could increase the survival rates among SOT patients. Overall, renal and lung TRs appear to have a higher predisposition for acquiring TB than other type of recipients. Monitoring of the high-risk recipients, prompt diagnosis, and appropriate treatment are required to manage TB infection among TRs especially in endemic areas.

Isolation and Identification of Legionella spp. in environmental water sources based on macrophage infectivity potentiator (mip) gene sequencing in southwest Iran.

Legionella species are widespread in natural water sources and man-made aqueous environments, as well as fresh-water. The present study was conducted owing to the lack of research regarding the prevalence of Legionella spp in the water sources of Ahvaz city in southwest Iran. In this study the macrophage infectivity potentiator (mip) gene sequencing was used for identification of various Legionella species isolated from different water sources. In this study, 144 water samples were collected and inoculated on the buffered charcoal-yeast extract (BCYE) agar and modified Wadowsky-Yee (MWY) medium. The DNA was extracted from positive cultures. The Legionella species were confirmed by amplifying a 654 bp fragment of the 16S rRNA gene. The mip gene of all isolates were amplified by PCR and purified for sequencing. The mip gene sequences were analyzed by jPHYDIT software version 1. The results showed a 13.9% (20/144) prevalence of Legionella spp. in water sources of Ahvaz city, southwest Iran. Analyzing of the mip gene sequences showed, out of 20 Legionella isolates, 13 isolates (54.1%) were positive for L. pneumophila, 5 isolates (20.8%) were positive for L. worsleinsis, one isolates for each one of L. dumoffi and L. fairfieldensis, (4.1%). According to our research, the occurrence of Legionella spp in water sources could be a hazard for the health systems especially in the hospitals. The regular monitoring of these water sources by health planners may therefore be useful for decreasing the risk for Legionella spp. infections.

Virulence-associated genes and drug susceptibility patterns of uropathogenic Escherichia coli isolated from patients with urinary tract infection.

Background: Different Escherichia coli phylogenetic groups, such as A, B1, B2, and D, have four functional groups - adhesins, microcins, toxins, and capsules - which can cause urinary tract infections (UTIs). A phylogenetic group with a high virulence content becomes a worldwide health concern. Resistance to antimicrobial agents increasingly complicates the management of E. coli extraintestinal infections, as a major source of illness, death, and increased health care costs. The aim of this study was to determine the virulence content and the antimicrobial susceptibility pattern of different uropathogenic E. coli (UPEC) phylogenetic groups in Ahvaz, Iran. Methods: Phylogenetic groups, virulence-associated genes (VAGs), and antimicrobial susceptibility tests were detected by molecular and phenotypic methods in a total of 232 clinically well-characterized E. coli strains, isolated from two collections of patients with hospital-acquired (HA) and community-acquired (CA) UTIs. Results: Our results revealed that among 232 UPEC strains, the most frequent phylogenetic group was phylogroup D (58%) with the greatest content in virulence factors, including kpsM (23%), neuA (76.3%, capsule), cnf (29.6%, toxin), and Pap (54.8%, adhesin). Phylogroups D and, to a lesser extent, B2 were the most drug-resistant phylogroups. In addition, phylogroup D was responsible for the majority of HA (64.7%) and CA (48.4%) infections. Conclusion: Among UPEC strains causing UTIs, different phylogroups, through different VAGs, could cause severe infection. Knowledge about the distribution of the four functional groups and VAGs belonging to these phylogroups would significantly help to confine and prevent the development of lethal infection caused by these strains.

WITHDRAWN: Phylotyping based virulence associated genes and drug susceptibility of Uropathogenic Escherichia coli in urinary tract infection patients.

Ahead of Print article withdrawn by publisher.

Antimicrobial Resistance Patterns of the Gram-positive Bacteria Isolated from Children with Bloodstream Infection in an Iranian Referral Hospital: A 6-year Study.

BACKGROUND: Bloodstream infections (BSI) are considered as a serious cause of morbidity and mortality in children. The aim of this study was to report the common Gram-positive bacteria (GPB) responsible for bloodstream infections in children and determine their antimicrobial resistance patterns in Children Medical Center (CMC) Hospital, Tehran, Iran. METHODS: This retrospective study was conducted within a six-year period (March 2011 to September 2016) for pediatric patients with BSI. Standard bacteriological methods were performed for identification of the bacteria. Antimicrobial susceptibility tests were evaluated by using the disk diffusion method according to the CLSI recommendations. RESULTS: Among 68233 blood cultures, 2349 isolates were obtained which 59% of them (N=1393) were GPB and 41% (n=956) were Gram-negative. The most common GPB isolates were Coagulase negative Staphylococcus (CoNS) (N= 609, 44%), followed by Staphylococcus aureus (N=319, 23%), Enterococcus spp. (N=139, 10%), Streptococcus pneumonia (N= 106, 8%), Streptococci viridans (N= 180, 13%) Micrococcus spp. (N=24, 1.7%) and Streptococcus group B (N= 16, 1%). The rate of methicillin resistance in S. aureus and CoNS was 47% (N=116/246) and 91% (N=557/609), respectively. Isolates of S. pneumoniae showed high-level of resistance to trimethoprim/sulfamethoxazole (N=28/33, 85%) and erythromycin (N=59/91, 65%). S. viridans isolates and Micrococcus spp. were highly sensitive to linezolid (100%). All of the tested isolates of Streptococcus group B were sensitive to all the antibiotics used in this study. Among Enterococcus spp., 52% (N=69/133) of the m were resistant to vancomycin. CONCLUSIONS: Our results emphasize the importance of a valuable guide in identifying resistance trends and selecting appropriate antibiotic.

Prevalence and antimicrobial susceptibility of Salmonella and Shigella spp. among children with gastroenteritis in an Iranian referral hospital.

BACKGROUND: Gastroenteritis is one of the leading cause of illnesses through the world, especially in developing countries.Salmonella and Shigella infections are considered as the main public health problems in children. The aim of this study was to detect the prevalence and antimicrobial susceptibility of Salmonella and Shigella spp. among children with gastroenteritis in an Iranian referral hospital. METHODS: During April 2013 to April 2014, all medical records of children with gastroenteritis admitted to a pediatric medical center were evaluated. Positive stool cultures of children were evaluated and frequency of Salmonella and Shigella spp. and their antimicrobial susceptibility were detected. RESULTS: In this study, 676 patients with the mean age of 24.94 months were enrolled. Eighty-eight (42%) Salmonella spp., 85 (40%) Shigella spp., 33 (16%) E. coli and 5(2%) candida albicans were isolated from 211 positive stool cultures. Among 85 Shigella spp. isolates, S. sonnei, S. flexneri and other Shigella spp. were isolated from 39 (46%) isolates, 36(42%) and 10(12%), respectively. Among 88 isolated Salmonella spp., 36 (41%) isolates were Salmonella Serogroup D, 26 (30%) were Salmonella Serogroup B, 20 (23%) isolates were Salmonella Serogroup C and 6 (7%) were other Salmonella spp. isolates. Thirty-eight percent of Salmonella serogroup B were resistant to nalidixic acid, while higher frequency of nalidixic acid resistant was found in Salmonella serogroup C and Salmonella serogroup D. The higher frequency of ampicillin resistant was found in Shigella spp. than Salmonella spp. High frequency of cefotaxime resistant was seen in S. sonei and S. flexneri (77% and 56%, respectively), whereas more than 90% of Salmonella serogroup B, C and D were susceptible to this antibiotic. CONCLUSION: In conclusion, Shigella and Salmonella serogroups can be considered as important etiological agents of acute diarrhea in children. Since the prevalence of antibiotic resistance is increasing in recent years in Iran, further studies on the prevalence, antimicrobial susceptibility pattern and mechanisms of antibiotic resistance in these species is highly recommended.

Research Performance Measures and the Moderating Role of Faculty Characteristics in Epidemiology.

Several numeric measures have been proposed to evaluate the individual researchers' scientific performance. Among these measures, h-index is the most common and well recognized measure of research productivity and impact in scientific communities. However, empirical investigations and recent inspections revealed some shortcomings and limitations of this measure. In order to complement these limitations, several variants have been proposed in which g-index and ar-index were among the most discussed measures. The aim of this study was to examine h-index, g-index and ar-index across Iranian epidemiologists to identify the moderating characteristics as well as the distribution of these measures in the field. Using Web of Science Database, a list of Iranian epidemiologists was searched and total number of articles, total citations, and citations per paper, h-index, scientific age, g-index and ar-index were extracted and calculated for any epidemiologist. Descriptive statistics and multivariate linear regression models were used to examine research performance measures of Iranian epidemiologists. According to our findings, research performance measures found to be statistically associated with scientific age and academic ranking of Iranian Epidemiologists. Gender differences were not relevant to research performance across different measures.