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1.
Artículo en Inglés | MEDLINE | ID: mdl-38563675

RESUMEN

Strain LB-N7T, a novel Gram-negative, orange, translucent, gliding, rod-shaped bacterium, was isolated from water samples collected from an open system of Atlantic salmon (Salmo salar) smolts in a fish farm in Chile during a flavobacterial infection outbreak in 2015. Phylogenetic analysis based on 16S rRNA sequences (1337 bp) revealed that strain LB-N7T belongs to the genus Flavobacterium and is closely related to the type strains Flavobacterium ardleyense A2-1T (98.8 %) and Flavobacterium cucumis R2A45-3T (96.75 %). The genome size of strain LB-N7T was 2.93 Mb with a DNA G+C content 32.6 mol%. Genome comparisons grouped strain LB-N7T with Flavobacterium cheniae NJ-26T, Flavobacterium odoriferum HXWNR29T, Flavobacterium lacisediminis TH16-21T and Flavobacterium celericrescens TWA-26T. The calculated digital DNA-DNA hybridization values between strain LB-N7T and the closest related Flavobacterium strains were 23.3 % and the average nucleotide identity values ranged from 71.52 to 79.39 %. Menaquinone MK-6 was the predominant respiratory quinone, followed by MK-7. The major fatty acids were iso-C15 : 0 and anteiso-C15 : 0. The primary polar lipids detected included nine unidentified lipids, two amounts of aminopospholipid and phospholipids, and a smaller amount of aminolipid. Phenotypic, genomic, and chemotaxonomic data suggest that strain LB-N7T (=CECT 30406T=RGM 3221T) represents as a novel bacterial species, for which the name Flavobacterium psychraquaticum sp. nov. is proposed.


Asunto(s)
Flavobacterium , Salmo salar , Animales , Flavobacterium/genética , Chile , Filogenia , ARN Ribosómico 16S/genética , Composición de Base , Ácidos Grasos/química , Análisis de Secuencia de ADN , ADN Bacteriano/genética , Técnicas de Tipificación Bacteriana
2.
Neuroimage ; 279: 120295, 2023 10 01.
Artículo en Inglés | MEDLINE | ID: mdl-37536526

RESUMEN

How does the brain code the meanings conveyed by language? Neuroimaging studies have investigated this by linking neural activity patterns during discourse comprehension to semantic models of language content. Here, we applied this approach to the production of discourse for the first time. Participants underwent fMRI while producing and listening to discourse on a range of topics. We used a distributional semantic model to quantify the similarity between different speech passages and identified where similarity in neural activity was predicted by semantic similarity. When people produced discourse, speech on similar topics elicited similar activation patterns in a widely distributed and bilateral brain network. This network was overlapping with, but more extensive than, the regions that showed similarity effects during comprehension. Critically, cross-task neural similarities between comprehension and production were also predicted by similarities in semantic content. This result suggests that discourse semantics engages a common neural code that is shared between comprehension and production. Effects of semantic similarity were bilateral in all three RSA analyses, even while univariate activation contrasts in the same data indicated left-lateralised BOLD responses. This indicates that right-hemisphere regions encode semantic properties even when they are not activated above baseline. We suggest that right-hemisphere regions play a supporting role in processing the meaning of discourse during both comprehension and production.


Asunto(s)
Comprensión , Lenguaje , Humanos , Comprensión/fisiología , Encéfalo/fisiología , Semántica , Mapeo Encefálico/métodos , Imagen por Resonancia Magnética
3.
Artículo en Inglés | MEDLINE | ID: mdl-37010890

RESUMEN

Strain I-SCBP12nT, a novel Gram-stain-negative, aerobic, non-spore-forming, motile-by-gliding and rod-shaped bacterium, was isolated from a chinstrap penguin chick (Pygoscelis antarcticus) during a 2015 expedition to the Chilean Antarctic territory. Phylogenetic analysis based on 16S rRNA gene sequencing confirmed that strain I-SCBP12nT belonged to the genus Flavobacterium, being closely related to strains Flavobacterium chryseum P3160T (98.52 %), Flavobacterium hercynium WB 4.2-33T (98.47 %) and Flavobacterium chilense LM-19-FpT (98.47 %). The genome size of strain I-SCBP12nT was 3.69 Mb with DNA G+C content 31.95 mol%. Genomic comparisons of strain I-SCBP12nT with type species in the genus Flavobacterium were performed, with obtained average values near 75.17 and 84.33 % for the blast and MUMer analyses of average nucleotide identity, respectively, and 0.86 for the tetranucleotides frequency analysis. These values are far from the accepted species cut-off values. Strain I-SCBP12nT contained MK-6 as the predominant menaquinone and the major polar lipids were aminophospholipid, an unidentified aminolipid and unidentified lipids. The predominant fatty acids (> 5 %) were iso-C14 : 0, iso-C15 : 0, anteiso-C15 : 0, iso-C16 : 0, iso-C16 : 1, iso-C16 : 0 3-OH, C15 : 1 ω6c and summed feature 3 (C16 : 1 ω7c/C16 : 1 ω6c). Phenotypic, chemotaxonomic and genomic data supported the assignment of strain I-SCBP12nT (=CECT 30404T=RGM 3223T) to a novel species of Flavobacterium, for which the name Flavobacterium pygoscelis sp. nov.is proposed.


Asunto(s)
Ácidos Grasos , Spheniscidae , Animales , Ácidos Grasos/química , Flavobacterium , Filogenia , ARN Ribosómico 16S/genética , ADN Bacteriano/genética , Análisis de Secuencia de ADN , Composición de Base , Técnicas de Tipificación Bacteriana , Vitamina K 2
4.
Sci Adv ; 9(7): eade4954, 2023 02 17.
Artículo en Inglés | MEDLINE | ID: mdl-36800419

RESUMEN

Early natural historians-Comte de Buffon, von Humboldt, and De Candolle-established environment and geography as two principal axes determining the distribution of groups of organisms, laying the foundations for biogeography over the subsequent 200 years, yet the relative importance of these two axes remains unresolved. Leveraging phylogenomic and global species distribution data for Mimosoid legumes, a pantropical plant clade of c. 3500 species, we show that the water availability gradient from deserts to rain forests dictates turnover of lineages within continents across the tropics. We demonstrate that 95% of speciation occurs within a precipitation niche, showing profound phylogenetic niche conservatism, and that lineage turnover boundaries coincide with isohyets of precipitation. We reveal similar patterns on different continents, implying that evolution and dispersal follow universal processes.


Asunto(s)
Biodiversidad , Ecosistema , Filogenia , Geografía , Bosque Lluvioso , Clima Tropical
5.
Cortex ; 155: 287-306, 2022 10.
Artículo en Inglés | MEDLINE | ID: mdl-36075141

RESUMEN

Language processing requires the integration of diverse sources of information across multiple levels of processing. A range of psycholinguistic properties have been documented in previous studies as having influence on brain activation during language processing. However, most of those studies have used factorial designs to probe the effect of one or two individual properties using highly controlled stimuli and experimental paradigms. Little is known about the neural correlates of psycholinguistic properties in more naturalistic discourse, especially during language production. The aim of our study is to explore the above issues in a rich fMRI dataset in which participants both listened to recorded passages of discourse and produced their own narrative discourse in response to prompts. Specifically, we measured 13 psycholinguistic properties of the discourse comprehended or produced by the participants, and we used principal components analysis (PCA) to address covariation in these properties and extract a smaller set of latent language characteristics. These latent components indexed vocabulary complexity, sensory-motor and emotional language content, discourse coherence and speech quantity. A parametric approach was adopted to study the effects of these psycholinguistic variables on brain activation during comprehension and production. We found that the pattern of effects across the cortex was somewhat convergent across comprehension and production. However, the degree of convergence varied across language properties, being strongest for the component indexing sensory-motor language content. We report the full, unthresholded effect maps for each psycholinguistic variable, as well as mapping how these effects change along a large-scale cortical gradient of brain function. We believe that our findings provide a valuable starting point for future, confirmatory studies of discourse processing.


Asunto(s)
Comprensión , Percepción del Habla , Encéfalo/fisiología , Mapeo Encefálico , Comprensión/fisiología , Humanos , Imagen por Resonancia Magnética , Psicolingüística , Habla , Percepción del Habla/fisiología
6.
Cereb Cortex ; 32(19): 4317-4330, 2022 09 19.
Artículo en Inglés | MEDLINE | ID: mdl-35059718

RESUMEN

When comprehending discourse, listeners engage default-mode regions associated with integrative semantic processing to construct a situation model of its content. We investigated how similar networks are engaged when we produce, as well as comprehend, discourse. During functional magnetic resonance imaging, participants spoke about a series of specific topics and listened to discourse on other topics. We tested how activation was predicted by natural fluctuations in the global coherence of the discourse, that is, the degree to which utterances conformed to the expected topic. The neural correlates of coherence were similar across speaking and listening, particularly in default-mode regions. This network showed greater activation when less coherent speech was heard or produced, reflecting updating of mental representations when discourse did not conform to the expected topic. In contrast, regions that exert control over semantic activation showed task-specific effects, correlating negatively with coherence during listening but not during production. Participants who showed greater activation in left inferior prefrontal cortex also produced more coherent discourse, suggesting a specific role for this region in goal-directed regulation of speech content. Results suggest strong correspondence of discourse representations during speaking and listening. However, they indicate that the semantic control network plays different roles in comprehension and production.


Asunto(s)
Comprensión , Percepción del Habla , Encéfalo/diagnóstico por imagen , Encéfalo/fisiología , Mapeo Encefálico , Comprensión/fisiología , Humanos , Redes Neurales de la Computación , Percepción del Habla/fisiología
7.
Protoplasma ; 259(1): 203-215, 2022 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-33948739

RESUMEN

The genus Mimosa Linnaeus (Leguminosae) comprises more than 530 species, being one of the most diversified genera in the family. A vast morphologic variability has been described at all infrageneric levels. Considering stomata description, a very low proportion of species have been studied in the genus, and the description was limited to stomata types, but not to variation in the disposition of subsidiary cells. Here we analyze type, length, and distribution of stomatic complexes in 19 taxa of Mimosa subseries Dolentes and subseries Brevipedes, a high variability taxonomic complex, as well as their density on both foliar faces and epidermic pavement cell morphology. We found four different stomatal types, 2 distribution types, and 3 epidermic pavement cell shapes. Some of these features are taxonomically relevant at infraspecific levels, since it adds important information for the separation of the taxa, but also questions supraspecific taxonomic groups of previous proposals of the genus. We also hypothesized about the origin of the variation of some stomata features in relation to ecological and ploidy-level variability in this complex.


Asunto(s)
Fabaceae , Mimosa , Células Epidérmicas , Epidermis de la Planta , Estomas de Plantas
8.
Curr Res Microb Sci ; 2: 100049, 2021 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-34841340

RESUMEN

Botrytis cinerea is a phytopathogenic fungus that infects over 200 plant species and can cause significant crop losses in local and worldwide agricultural industries. However, its presence in the endemic flora in the Coquimbo Region and its impact on local flora have not been studied yet. In order to determine whether Botrytis spp is present in the native plant in the Coquimbo Region, fifty-two field-samples were analysed. A total of 30 putative Botrytis spp were isolated and phenotypic and genetically characterized. The internal transcribed spacer (ITS) analysis of these isolates revealed that it corresponded to genus Botrytis. For further confirmation, nuclear protein-coding genes (G3PDH, HSP60, and RPB2) were sequenced and showed 100% identity against B. cinerea. Complementary to this, Botrytis can also be clustered in two different groups, group I (B. pseudocinerea) and group II (B. cinerea), based on DNA polymorphism, the Botrytis isolates were identified as member of group II. On the order hand, we investigated the presence and frequency distribution of the transposable elements boty and flipper in the isolates obtained. The results indicate that 83.3% of the isolates presented both transposable elements, boty and flipper, indicating that the most prevalent genotype was transpose. In addition, 16.6% of the isolates showed substantially reduced virulence in apple fruit in comparison to B05.10 strain. According to fungicide resistance studies, the results indicate that resistance to Fenhexamid or Boscalid was observed in the 22.6% of isolates. The results show for the first time that B. cinerea has not been described before in fourteen new host plants and contributes to our fundamental understanding of the presence of B. cinerea in the native plant in the Coquimbo Region and the possible ecological impact of this disease on native and endemic plants.

9.
Environ Res ; 196: 110344, 2021 05.
Artículo en Inglés | MEDLINE | ID: mdl-33068585

RESUMEN

The air humidity in Antarctica is very low and this peculiar weather parameter make the use of flame retardants in research facilities highly needed for safety reasons, as fires are a major risk. Legacy and novel flame retardants (nFRs) including polybrominated diphenyl ethers (PBDEs), hexabromocyclododecanes (HBCDs), 1,2-bis(2,4,6-tribromophenoxy) ethane (BTBPE), Dechlorane Plus (DP), and other nFRs were measured in indoor dust samples collected at research Stations in Antarctica: Gabriel de Castilla, Spain (GCS), Julio Escudero, Chile (JES), and onboard the RRS James Clark Ross, United Kingdom (RRS JCR). The GC-HRMS and LC-MS-MS analyses of dust samples revealed ∑7PBDEs of 41.5 ± 43.8 ng/g in rooms at GCS, 18.7 ± 11.6 ng/g at JES, and 27.2 ± 37.9 ng/g onboard the RRS JCR. PBDE pattern was different between the sites and most abundant congeners were BDE-183 (40%) at GCS, BDE-99 (50%) at JES, and BDE-153 (37%) onboard the RRS JCR. The ∑(4)HBCDs were 257 ± 407 ng/g, 14.9 ± 14.5 ng/g, and 761 ± 1043 ng/g in indoor dust collected in rooms at GCS, JES, and RRS JCR, respectively. The ∑9nFRs were 224 ± 178 ng/g at GCS, 14.1 ± 13.8 ng/g at JES, and 194 ± 392 ng/g on the RRS JCR. Syn- and anti-DP were detected in most of the samples and both isomers showed the highest concentrations at GCS: 163 ± 93.6 and 48.5 ± 61.1 ng/g, respectively. The laboratory and living room showed the highest concentration of HBCDs, DPs, BTBPE. The wide variations in FR levels in dust from the three research facilities and between differently used rooms reflect the different origin of furnishing, building materials and equipment. The potential health risk associated to a daily exposure via dust ingestion was assessed for selected FRs: BDEs 47, 99, and 153, α-, ß-, and γ-HBCD, BTBPE, syn- and anti-DP. Although the estimated exposures are below the available reference doses, caution is needed given the expected increasing use of novel chemicals without a comprehensive toxicological profile.


Asunto(s)
Contaminación del Aire Interior , Retardadores de Llama , Contaminación del Aire Interior/análisis , Regiones Antárticas , Chile , Polvo/análisis , Exposición a Riesgos Ambientales/análisis , Monitoreo del Ambiente , Retardadores de Llama/análisis , Éteres Difenilos Halogenados/análisis , Humanos , España , Reino Unido
10.
Plants (Basel) ; 9(8)2020 Jul 24.
Artículo en Inglés | MEDLINE | ID: mdl-32721997

RESUMEN

Mimosa carolina (Leguminosae), a new species from the Parque Nacional Chapada das Mesas, located in the northern limit of the Brazilian Cerrado, is described and illustrated. In addition, a phylogenetic reconstruction was performed to recover the position of this species in relation to the main clades of the genus Mimosa. This new species is assigned to sect. Habbasia ser. Bipinnatae and exhibits relevant morphological differences with all described species of this series, most notably the prostate habit, glabrous stems, and absence of internal spicules. Our results indicate that this new entity is clearly nested in a strongly supported clade with other striated-corolla species of ser. Bipinnatae. Therefore, ser. Bipinnatae appears to be monophyletic, and a morphologically and ecologically cohesive group within Mimosa. An updated identification key for this series is provided.

11.
Antonie Van Leeuwenhoek ; 113(8): 1201-1211, 2020 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-32436126

RESUMEN

The bacterial strain M7D1T was isolated from samples of the rhizosphere of desert bloom plants on the Atacama region located in northern Chile as part of a study intended to isolate nitrifying bacteria in this adverse environment. It was previously identified as belonging to the Pseudomonas fluorescens group. In this study, the phylogenetic analysis of the 16s RNA, gyrA, rpoB and rpoD genes confirmed that this strain belongs to this group, especially Sub Group (SG) Koreensis, but it represents a potential new species. Additionally, the average nucleotide identity confirmed this as the highest identity value (0.92) with Pseudomonas moraviensis LMG 24280, which is lower than the 0.94 threshold established to classify two strains within the same species. The strain M7D1T shared a similar fatty acids methyl ester profile than the type strains of other Pseudomonas spp. previously described. Furthermore, it can be differentiated phenotypically from other related species of SG P. koreensis. Based on these results, the existence of a new species of Pseudomonas is demonstrated, for which the name Pseudomonas atacamensis is proposed. This strain presented a set of genes associated with plant growth-promoting rhizobacteria and it is a good candidate to be used for recovery of contaminated soils. However, more studies are required to demonstrate whether this bacterium is non-pathogenic, can survive in the presence of toxic compounds and promote growth or help to the stress management of plants.


Asunto(s)
Filogenia , Pseudomonas/clasificación , Pseudomonas/aislamiento & purificación , Rizosfera , Microbiología del Suelo , Técnicas de Tipificación Bacteriana , Composición de Base , Chile , ADN Bacteriano/genética , Ácidos Grasos/análisis , Genes Bacterianos/genética , Genoma Bacteriano , Hibridación de Ácido Nucleico , Pseudomonas/citología , Pseudomonas/genética , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
12.
Microbiol Resour Announc ; 9(21)2020 May 21.
Artículo en Inglés | MEDLINE | ID: mdl-32439667

RESUMEN

Here, we announce the draft genome sequence of Pseudomonas sp. strain AN3A02, isolated from the rhizosphere of one of the only two species of vascular plants existing in the Antarctic continent, Deschampsia antarctica Desv. This isolate, which inhibited the mycelial growth of Botrytis cinerea in dual culture, has a genome sequence of 6,778,644 bp, with a G+C content of 60.4%. These draft genome sequence data provide insight into the genetics underpinning the antifungal activity of this strain.

13.
J Fish Dis ; 43(5): 561-570, 2020 May.
Artículo en Inglés | MEDLINE | ID: mdl-32196708

RESUMEN

Flavobacterium psychrophilum is the causative agent of bacterial cold-water disease and rainbow trout syndrome in freshwater salmonid fish worldwide, generating injuries and high mortality rates. Despite several studies on this bacterium, the infection mechanism remains unknown due to limitations in the employed animal models. In this work, we propose using zebrafish (Danio rerio) as a model for studying bacterial pathogenicity. To substantiate this proposal, zebrafish infection by F. psychrophilum strain JIP 02/86 was characterized. Zebrafish larvae were infected using the bath method, and morphological changes and innate immune system activation were monitored using transgenic fish. Salmonid-like infection phenotypes were observed in 4.74% of treated larvae, as manifested by fin, muscle and caudal peduncle damage. Symptomatic and dead larvae accounted for 1.35% of all challenged larvae. Interestingly, infected larvae with no infection phenotypes showed stronger innate immune system activation than specimens with phenotypes. A failure of function assay for myeloid factor pu.1 resulted in more infected larvae (up to 43.5%), suggesting that low infection rates by F. psychrophilum would be due to the protective actions of the innate immune system against this bacterium in zebrafish larvae. Our results support the use of zebrafish as an infection model for studying F. psychrophilum. Furthermore, the percentage of infected fish can be modulated by disturbing, to varying extents, the differentiation of myeloid cells. Using this evidence as a starting point, different aspects of the infection mechanism of F. psychrophilum could be studied in vivo.


Asunto(s)
Modelos Animales de Enfermedad , Enfermedades de los Peces/microbiología , Infecciones por Flavobacteriaceae/veterinaria , Flavobacterium/fisiología , Pez Cebra , Animales , Infecciones por Flavobacteriaceae/microbiología
14.
Microbiol Resour Announc ; 9(9)2020 Feb 27.
Artículo en Inglés | MEDLINE | ID: mdl-32107298

RESUMEN

We announce the draft genome sequence of strain B2, which belongs to a potentially new Buttiauxella species, isolated from soil associated with rhizosphere of olivillo trees (Aextoxicon punctatum). Its size is 4,967,099 bp, and its G+C content is 49.1%. The genome of strain B2 carries genes related to rhizobacteria that promote the growth of plants.

15.
Int J Syst Evol Microbiol ; 70(3): 1963-1968, 2020 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-31985393

RESUMEN

A Gram-stain positive, pleomorphic, oxidase-negative, non-motile isolate from the ulcer of a farmed Atlantic salmon (Salmo salar), designated strain T11bT, was subjected to a comprehensive taxonomic investigation. A comparative analysis of the 16S rRNA gene sequence showed highest similarities to the type strains of Pseudarthrobacter siccitolerans (98.1 %) and Arthrobacter methylotrophus and Pseudarthrobacter phenanthrenivorans (both 98.0 %). The highest ANI value observed between the assembled genome of T11bT and the publicly available Pseudarthrobacter and Arthrobacter type strain genomes were 81.15 and 80.99 %, respectively. The major respiratory quinone was menaquinone MK-9(H2). The polyamine pattern contained predominantly spermidine. The polar lipid profile consisted of the major lipids diphosphatidylglycerol, phosphatidylglycerol, monogalactosyl-diacylglycerol and dimannosylglyceride. Minor amouts of trimannosyldiacylglycerol and phosphatidylinositol were also detected. The peptidoglycan was of the type A3α l-Lys-l-Ser-l-Thr-l-Ala (A11.23). In the fatty acid profile, anteiso and iso branched fatty acids predominated (anteiso C15 : 0, iso C16 : 0, anteiso C17 : 0). Moderate to low DNA-DNA similarities, physiological traits as well as unique traits in the fatty acid pattern distinguished strain T11bT from the next related species. All these data point to the fact that strain T11bT represents a novel species of the genus Arthrobacter for which we propose the name Arthrobacter ulcerisalmonis sp. nov. The type strain is T11bT (=CIP 111621T=CCM 8854T=LMG 30632T=DSM 107127T).


Asunto(s)
Arthrobacter/clasificación , Enfermedades de los Peces/microbiología , Filogenia , Salmo salar/microbiología , Úlcera/microbiología , Animales , Acuicultura , Arthrobacter/aislamiento & purificación , Técnicas de Tipificación Bacteriana , Composición de Base , Pared Celular/química , Chile , ADN Bacteriano/genética , Ácidos Grasos/química , Hibridación de Ácido Nucleico , Peptidoglicano/química , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Vitamina K 2/análogos & derivados , Vitamina K 2/química
16.
Int J Syst Evol Microbiol ; 70(1): 211-219, 2020 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-31617840

RESUMEN

One slightly beige-white pigmented, Gram-stain-negative, rod-shaped bacterium, strain I-STPP5bT, was isolated from the trachea of a Gentoo penguin chick individual (Pygoscelin papua) investigated in Fildes Bay, Chilean Antarctic (62° 12' S, 58° 57' W). I-STPP5bT consists of a 3.4 Mb chromosome with a DNA G+C content of 44.4 mol%. Of the 3056 predicted genes, 1206 were annotated as hypothetical proteins and 51 were tRNAs. Phylogenetic analysis based on nearly full-length 16S rRNA gene sequences showed that the isolate shared a 16S rRNA gene sequence identity to the type strains of Psychrobacter phenylpyruvicus (98.8 %), Psychrobacter arenosus and Psychrobacter pasteurii (both 98.3 %), Psychrobacter piechaudii (98.2 %) and Psychrobacter sanguinis (98.1 %), but 16S rRNA gene sequence similarities to all other Psychrobacter species were ≤98.0 %. Partial gyrB nucleotide and amino acid sequence similarities among strain STPP5bT and the next related type strains were all below 81.8 and 92.9%, respectively. DNA-DNA hybridisation (DDH) with P. phenylpyruvicus LMG 5372T, P. arenosus DSM 15389T and P. sanguinis DSM 23635T also showed low values (all below 30 %). The main cellular fatty acids of the strain were C18 : 1ω9c and C16 : 1ω7c and/or C16 : 1ω6c. Based on phylogenetic, chemotaxonomic, genomic and phenotypic analyses we propose a new species of the genus Psychrobacter, with the name Psychrobacter pygoscelis sp. nov. and strain I-STPP5bT (=CIP 111410T= CCM 8799T=LMG 30301T) as type strain.


Asunto(s)
Filogenia , Psychrobacter/clasificación , Spheniscidae/microbiología , Tráquea/microbiología , Animales , Regiones Antárticas , Técnicas de Tipificación Bacteriana , Composición de Base , Chile , ADN Bacteriano/genética , Ácidos Grasos/química , Hibridación de Ácido Nucleico , Psychrobacter/aislamiento & purificación , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
17.
PLoS One ; 14(8): e0220151, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31412055

RESUMEN

The Gran Chaco is a wide ecologic-geographic region comprising northern Argentina, western Paraguay, southern Bolivia and the southwestern extreme of Brazil. This region exhibits extreme temperatures, annually regular frosts, and sedimentary soils; it has been dramatically threatened by agriculture expansion in recent decades. Therefore, increasing knowledge of plant diversity is critical for conservation purposes. We present a Legume checklist of the Gran Chaco ecoregion including conservation status of its endemic species. Leguminosae is the third most diverse plant family in the Neotropics. Assuming a rigorous spatial definition of the Gran Chaco, we recorded 98 genera, 362 species, and 404 specific and infraspecific taxa. Endemic/typical taxa were 17%, comparable to adjacent tropical plant formations, and they were found in higher percentages in Caesalpinioideae (24%) and Cercidoideae (33%) than Papilionoideae (11%) subfamily. We also analyzed the plant diversity comparing lineages and subregions. The Gran Chaco Legumes are predominantly widespread generalists, or they belong to either Chaco sensu stricto or Neotropical Seasonally Dry Tropical Forest (SDTF) lineages. Though the Humid Chaco registered the highest species richness, Dry Chaco and Sierra Chaco, the most threatrened subregions, exhibited the highest percentages of exclusive and proper Chaco-lineage species. These results suggest that diversification of Legumes has been most relevant in Dry Chaco and Sierra Chaco, probably by their more demanding and harsh environmental conditions limiting the dispersion of generalists or intrusive-invading species. This study is paramount to reach an improved delimitation of the Gran Chaco ecoregion in transitional areas with the SDTF and Cerrado formations. Conservation status is critical in genera of high economic interest, such as Arachis, Mimosa and Prosopis. At least one third of endemic taxa exhibit a critical status of conservation or are endangered, many of them being relevant to inbreeding program or exhibiting multiple economic uses.


Asunto(s)
Biodiversidad , Conservación de los Recursos Naturales , Fabaceae/clasificación , Argentina , Fabaceae/crecimiento & desarrollo , Bosques , Geografía
18.
J Fish Dis ; 42(10): 1447-1455, 2019 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-31418903

RESUMEN

Vibrio ordalii is an extracellular, Gram-negative bacterium that produces vibriosis in salmonids. While pathogenesis is not fully understood, this bacterium has numerous likely genes for adhesion, colonization, invasion factors and, as recently suggested, intracellular behaviour. Therefore, this study aimed to clarify possible intracellular behaviour for V. ordalii Vo-LM-18 and ATCC 33509T in the fish-cell lines SHK-1 and CHSE-214. Confocal microscopy revealed Vo-LM-18 and ATCC 33509T inside cytoplasm in both fish-cell lines at 4 hr post-inoculation (hpi). At 8 and 16 hpi, the proportion of fish cells invaded by both strains increased. Moreover, intracellular V. ordalii were observed after 8 hpi inside mouse embryonic fibroblasts (MEF), demonstrating that entry was not due to a cellular phagocytosis process. Flow cytometry confirmed immunocytochemistry results, with both V. ordalii evidencing statistically significant differences in the number of infected cells between 8 and 16 hpi. Interestingly, V. ordalii infection did not significantly damage fish cells, as determined by LDH liberation. Viable counts at 8 hpi detected, on average for both lines, 176 ± 47 CFU/ml of culturable intracellular Vo-LM-18 and ATCC 33509T cells. These in vitro findings support the facultative intracellular behaviour of V. ordalii and may be of importance for understanding pathogenicity and survival in aquatic environments.


Asunto(s)
Enfermedades de los Peces/microbiología , Salmón , Vibriosis/veterinaria , Vibrio/fisiología , Animales , Línea Celular , Citometría de Flujo/veterinaria , Técnica del Anticuerpo Fluorescente Indirecta/veterinaria , Microscopía Confocal/veterinaria , Vibriosis/microbiología
19.
Int J Syst Evol Microbiol ; 69(9): 2794-2800, 2019 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-31310192

RESUMEN

An orange-pigmented, oxidase-positive bacterial strain (I-41R45T), isolated from the kidney of a black rock cod fish sampled in the Chilean Antarctic was studied in a polyphasic taxonomic investigation. Cells of the isolate were coccoid and stained Gram-negative. A comparison of the 16S rRNA gene sequence of strain I-41R45T with sequences of type strains of most closely related Paracoccus species showed highest sequence similarities to Paracoccus hibiscisoli (98.4 %), Paracoccus marcusii (98.3 %), Paracoccus haeundaensis and Paracoccus carotinifaciens (both 98.2 %). 16S rRNA gene sequence similarities to all other Paracoccus species were below 97 %. The draft genome of strain I-41R45T had a size of 4.59 Mb with a DNA G+C content of 65.26 mol% and included the prediction and annotation of 4426 coding genes, 1973 protein-coding genes and 46 tRNAs. The fatty acid profile of strain I-41R45T consisted mainly of the major fatty acids C18 : 1 ω7c/ω9t/ω12t and C18:0, typical of the genus Paracoccus. DNA-DNA hybridizations between I-41R45T and type strains of P. hibiscisoli, P. marcusiiand P. haeundaensis resulted in similarity values of 45 % (reciprocal 26 %), 66 % (reciprocal 61 %), and 29 % (reciprocal 36 %), respectively. DNA-DNA hybridization results, together with the differentiating biochemical and chemotaxonomic properties, showed that strain I-41R45T represents a novel Paracoccus species, for which the name Paracoccus nototheniae sp. nov. (type strain I-41R45T=CCM 8875T=CIP 111632T), is proposed.


Asunto(s)
Riñón/microbiología , Paracoccus/clasificación , Perciformes/microbiología , Filogenia , Animales , Regiones Antárticas , Técnicas de Tipificación Bacteriana , Composición de Base , Chile , ADN Bacteriano/genética , Ácidos Grasos/química , Hibridación de Ácido Nucleico , Paracoccus/aislamiento & purificación , Pigmentación , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
20.
Microbiol Resour Announc ; 8(22)2019 May 30.
Artículo en Inglés | MEDLINE | ID: mdl-31147434

RESUMEN

We announce the draft genome sequence of Pseudomonas sp. strain M7D1, isolated from the rhizosphere of a plant in the Atacama Desert bloom event. The genome sequence had 6,170,633 bp with a G+C content of 59.9%. This draft genome sequence gives information about the presence of genes related to iron acquisition, alleviation of abiotic stress, and other essential traits of plant growth-promoting rhizobacteria.

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