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1.
Environ Microbiome ; 19(1): 31, 2024 May 08.
Artículo en Inglés | MEDLINE | ID: mdl-38720385

RESUMEN

BACKGROUND: Protists are essential contributors to eukaryotic diversity and exert profound influence on carbon fluxes and energy transfer in freshwaters. Despite their significance, there is a notable gap in research on protistan dynamics, particularly in the deeper strata of temperate lakes. This study aimed to address this gap by integrating protists into the well-described spring dynamics of Rímov reservoir, Czech Republic. Over a 2-month period covering transition from mixing to established stratification, we collected water samples from three reservoir depths (0.5, 10 and 30 m) with a frequency of up to three times per week. Microbial eukaryotic and prokaryotic communities were analysed using SSU rRNA gene amplicon sequencing and dominant protistan groups were enumerated by Catalysed Reporter Deposition-Fluorescence in situ Hybridization (CARD-FISH). Additionally, we collected samples for water chemistry, phyto- and zooplankton composition analyses. RESULTS: Following the rapid changes in environmental and biotic parameters during spring, protistan and bacterial communities displayed swift transitions from a homogeneous community to distinct strata-specific communities. A prevalence of auto- and mixotrophic protists dominated by cryptophytes was associated with spring algal bloom-specialized bacteria in the epilimnion. In contrast, the meta- and hypolimnion showcased a development of a protist community dominated by putative parasitic Perkinsozoa, detritus or particle-associated ciliates, cercozoans, telonemids and excavate protists (Kinetoplastida), co-occurring with bacteria associated with lake snow. CONCLUSIONS: Our high-resolution sampling matching the typical doubling time of microbes along with the combined microscopic and molecular approach and inclusion of all main components of the microbial food web allowed us to unveil depth-specific populations' successions and interactions in a deep lentic ecosystem.

2.
Autops Case Rep ; 13: e2023447, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-38046944

RESUMEN

External auditory canal (EAC) cylindroma is a rare tumor that mainly presents as a painless mass over the lateral aspect of the ear canal. They have been designated under different nomenclatures in the literature, and controversies persist about their etiology and histogenesis. Moreover, a clinical diagnosis of EAC cylindroma is often challenging because of their rarity and a close resemblance with other adnexal benign and malignant tumors. None of the previous authors have extensively reviewed the dermal cylindroma of the EAC. We provide an extensive review involving PubMed and Google Scholar and report by Preferred Reporting Items for Systematic Reviews and Meta-Analyses standards. A total of 8 cases are included in the current study. The mean age is 55.13 years. There are six females and two males. The left and right ear are involved in 62.50% and 37.50% of cases, respectively. The most common sign/symptom is painless mass (50%). Five authors reported a primary lesion (62.50%), while the remaining 3 reported a recurrent tumor (37.50%). Benign versus malignant cylindroma is reported in 87.50% and 12.50% of cases, respectively. All, except one case, reported a solitary swelling. Surgical excision was employed in all the cases. Primary defect closure versus defect closure with local/distant skin graft /flap is utilized in 37.50% and 62.50% of cases, respectively.

3.
Microbiome ; 11(1): 112, 2023 05 20.
Artículo en Inglés | MEDLINE | ID: mdl-37210505

RESUMEN

BACKGROUND: Planktonic microbial communities have critical impacts on the pelagic food web and water quality status in freshwater ecosystems, yet no general model of bacterial community assembly linked to higher trophic levels and hydrodynamics has been assessed. In this study, we utilized a 2-year survey of planktonic communities from bacteria to zooplankton in three freshwater reservoirs to investigate their spatiotemporal dynamics. RESULTS: We observed site-specific occurrence and microdiversification of bacteria in lacustrine and riverine environments, as well as in deep hypolimnia. Moreover, we determined recurrent bacterial seasonal patterns driven by both biotic and abiotic conditions, which could be integrated into the well-known Plankton Ecology Group (PEG) model describing primarily the seasonalities of larger plankton groups. Importantly, bacteria with different ecological potentials showed finely coordinated successions affiliated with four seasonal phases, including the spring bloom dominated by fast-growing opportunists, the clear-water phase associated with oligotrophic ultramicrobacteria, the summer phase characterized by phytoplankton bloom-associated bacteria, and the fall/winter phase driven by decay-specialists. CONCLUSIONS: Our findings elucidate the major principles driving the spatiotemporal microbial community distribution in freshwater ecosystems. We suggest an extension to the original PEG model by integrating new findings on recurrent bacterial seasonal trends. Video Abstract.


Asunto(s)
Ecosistema , Plancton , Animales , Fitoplancton , Zooplancton , Bacterias/genética , Estaciones del Año
4.
Microbiome ; 11(1): 15, 2023 01 26.
Artículo en Inglés | MEDLINE | ID: mdl-36698172

RESUMEN

BACKGROUND: The phytoplankton spring bloom in freshwater habitats is a complex, recurring, and dynamic ecological spectacle that unfolds at multiple biological scales. Although enormous taxonomic shifts in microbial assemblages during and after the bloom have been reported, genomic information on the microbial community of the spring bloom remains scarce. RESULTS: We performed a high-resolution spatio-temporal sampling of the spring bloom in a freshwater reservoir and describe a multitude of previously unknown taxa using metagenome-assembled genomes of eukaryotes, prokaryotes, and viruses in combination with a broad array of methodologies. The recovered genomes reveal multiple distributional dynamics for several bacterial groups with progressively increasing stratification. Analyses of abundances of metagenome-assembled genomes in concert with CARD-FISH revealed remarkably similar in situ doubling time estimates for dominant genome-streamlined microbial lineages. Discordance between quantitations of cryptophytes arising from sequence data and microscopic identification suggested the presence of hidden, yet extremely abundant aplastidic cryptophytes that were confirmed by CARD-FISH analyses. Aplastidic cryptophytes are prevalent throughout the water column but have never been considered in prior models of plankton dynamics. We also recovered the first metagenomic-assembled genomes of freshwater protists (a diatom and a haptophyte) along with thousands of giant viral genomic contigs, some of which appeared similar to viruses infecting haptophytes but owing to lack of known representatives, most remained without any indication of their hosts. The contrasting distribution of giant viruses that are present in the entire water column to that of parasitic perkinsids residing largely in deeper waters allows us to propose giant viruses as the biological agents of top-down control and bloom collapse, likely in combination with bottom-up factors like a nutrient limitation. CONCLUSION: We reconstructed thousands of genomes of microbes and viruses from a freshwater spring bloom and show that such large-scale genome recovery allows tracking of planktonic succession in great detail. However, integration of metagenomic information with other methodologies (e.g., microscopy, CARD-FISH) remains critical to reveal diverse phenomena (e.g., distributional patterns, in situ doubling times) and novel participants (e.g., aplastidic cryptophytes) and to further refine existing ecological models (e.g., factors affecting bloom collapse). This work provides a genomic foundation for future approaches towards a fine-scale characterization of the organisms in relation to the rapidly changing environment during the course of the freshwater spring bloom. Video Abstract.


Asunto(s)
Metagenoma , Virus , Agua Dulce , Bacterias , Plancton , Virus/genética , Eucariontes/genética , Agua
5.
Physica A ; 609: 128341, 2023 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-36465189

RESUMEN

We show that inner composition alignment networks derived for financial time-series data, studied in response to worldwide lockdown imposed in response to COVID-19 situation, show distinct patterns before, during and after lockdown phase. It is observed that significant couplings between companies as captured by inner composition alignment between time series, reduced considerably across the globe during lockdown and post-lockdown recovery period. The study of global community structure of the networks show that factions of companies emerge during recovery phase, with strong coupling within the members of the faction group, a trend which was absent before lockdown period. The study of strongly connected components of the networks further show that market has fragmented in response to COVID-19 situation. We find that most central firms as characterized by in-degree, out-degree and betweenness centralities belong to Chinese and Japanese economies, indicating a role played by these organizations in financial information propagation across the globe. We further observe that recovery phase of the lockdown period is strongly influenced by financial sector, which is one of the main result of this study. It is also observed that two different group of companies, which may not be co-moving, emerge across economies during COVID-19. We further notice that many companies in US and European economy tend to shield themselves from local influences.

6.
ISME J ; 17(1): 84-94, 2023 01.
Artículo en Inglés | MEDLINE | ID: mdl-36207492

RESUMEN

Morphology-based microscopic approaches are insufficient for a taxonomic classification of bacterivorous heterotrophic nanoflagellates (HNF) in aquatic environments since their cells do not display reliably distinguishable morphological features. This leads to a considerable lack of ecological insights into this large and taxonomically diverse functional guild. Here, we present a combination of fluorescence in situ hybridization followed by catalyzed reporter deposition (CARD-FISH) and environmental sequence analyses which revealed that morphologically indistinguishable, so far largely cryptic and uncultured aplastidic cryptophytes are ubiquitous and prominent protistan bacterivores in diverse freshwater ecosystems. Using a general probe for Cryptophyceae and its heterotrophic CRY1 lineage, we analyzed different water layers in 24 freshwater lakes spanning a broad range of trophic states, sizes and geographical locations. We show that bacterivorous aplastidic cryptophytes and the CRY1 lineage accounted for ca. 2/3 and » of total HNF, respectively, in both epilimnetic and hypolimnetic samples. These heterotrophic cryptophytes were generally smaller and more abundant than their chloroplast-bearing counterparts. They had high uptake rates of bacteria, hinting at their important roles in channeling carbon flow from prokaryotes to higher trophic levels. The worldwide ubiquity of Cryptophyceae and its CRY1 lineage was supported by 18S rRNA gene sequence analyses across a diverse set of 297 freshwater metagenomes. While cryptophytes have been considered to be mainly plastidic "algae", we show that it is the aplastidic counterparts that contribute considerably to bacterial mortality rates. Additionally, our results suggest an undiscovered diversity hidden amongst these abundant and morphologically diverse aplastidic cryptophytes.


Asunto(s)
Criptófitas , Ecosistema , Hibridación Fluorescente in Situ , Criptófitas/genética , Criptófitas/microbiología , Procesos Heterotróficos , Bacterias/genética , Lagos , Filogenia
7.
Autops. Case Rep ; 13: e2023447, 2023. tab, graf
Artículo en Inglés | LILACS-Express | LILACS | ID: biblio-1520266

RESUMEN

ABSTRACT External auditory canal (EAC) cylindroma is a rare tumor that mainly presents as a painless mass over the lateral aspect of the ear canal. They have been designated under different nomenclatures in the literature, and controversies persist about their etiology and histogenesis. Moreover, a clinical diagnosis of EAC cylindroma is often challenging because of their rarity and a close resemblance with other adnexal benign and malignant tumors. None of the previous authors have extensively reviewed the dermal cylindroma of the EAC. We provide an extensive review involving PubMed and Google Scholar and report by Preferred Reporting Items for Systematic Reviews and Meta-Analyses standards. A total of 8 cases are included in the current study. The mean age is 55.13 years. There are six females and two males. The left and right ear are involved in 62.50% and 37.50% of cases, respectively. The most common sign/symptom is painless mass (50%). Five authors reported a primary lesion (62.50%), while the remaining 3 reported a recurrent tumor (37.50%). Benign versus malignant cylindroma is reported in 87.50% and 12.50% of cases, respectively. All, except one case, reported a solitary swelling. Surgical excision was employed in all the cases. Primary defect closure versus defect closure with local/distant skin graft /flap is utilized in 37.50% and 62.50% of cases, respectively.

8.
Nat Chem Biol ; 18(12): 1417-1424, 2022 12.
Artículo en Inglés | MEDLINE | ID: mdl-36163386

RESUMEN

Anti-CRISPR (Acr) proteins are encoded by phages to inactivate CRISPR-Cas systems of bacteria and archaea and are used to enhance the CRISPR toolbox for genome editing. Here we report the structure and mechanism of AcrIF24, an Acr protein that inhibits the type I-F CRISPR-Cas system from Pseudomonas aeruginosa. AcrIF24 is a homodimer that associates with two copies of the surveillance complex (Csy) and prevents the hybridization between CRISPR RNA and target DNA. Furthermore, AcrIF24 functions as an anti-CRISPR-associated (Aca) protein to repress the transcription of the acrIF23-acrIF24 operon. Alone or in complex with Csy, AcrIF24 is capable of binding to the acrIF23-acrIF24 promoter DNA with nanomolar affinity. The structure of a Csy-AcrIF24-promoter DNA complex at 2.7 Å reveals the mechanism for transcriptional suppression. Our results reveal that AcrIF24 functions as an Acr-Aca fusion protein, and they extend understanding of the diverse mechanisms used by Acr proteins.


Asunto(s)
Bacteriófagos , Proteínas Asociadas a CRISPR , Proteínas Asociadas a CRISPR/genética , Proteínas Virales/química , Proteínas Virales/genética , Proteínas Virales/metabolismo , Sistemas CRISPR-Cas , Bacteriófagos/genética , Bacteriófagos/metabolismo , Pseudomonas aeruginosa/genética , Pseudomonas aeruginosa/metabolismo
9.
Environ Sci Pollut Res Int ; 29(41): 61838-61855, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-34432212

RESUMEN

Presence of higher concentration of ammonia (> 0.5 mg/L) as well as nitrite (> 0.2 mg/L) in aquaculture environment create difficulties for fish survival. The existing methods for removal of these pollutants are time-consuming. A stable biofilm-based system for ammonia removal from aquaculture wastewater was developed in the current study to overcome the limitations of conventional treatment processes. In order to do so, initially the bacterial candidate was well characterized and tested for rapid biofilm development. The ammonia bioremediating Bacillus albus (ASSF01), from the activated sludge of shrimp farm, with a generation time of 67 min 12 s in suspension culture, was a structured biofilm former. The staining based measurement showed biofilm initiation from the very first hour of incubation. This finding was further validated using scanning electron microscopy (SEM), profilometry, and ellipsometry with Brewster angular microscopy (BAM). Hurst exponent (H) calculation using the profilometer and ellipsometer data yielded a value of H of above 0.9 and 0.62, indicating positive correlation or persistence behavior, hence a stable biofilm former. Each method of biofilm measurement, in spite of variation in complexity and sensitivity, was equally effective for biofilm progression analysis. The generation time of ASSF01 upon immobilization was 15 min and 36 s, ensuring rapid development of stable system. Response surface methodology (RSM)-based optimization of aquaculture wastewater treatment by the isolate in a biofilm reactor at ambient temperature revealed the optimum influent concentration of ammonia (3.2 mg/L), nitrate (6.89 mg/L), and phosphate (1.17 mg/L) to be reduced to discharge level (as per aquaculture requirement) with 14 h of hydraulic retention time. This study demonstrates the potential of the isolate as an efficient bioremediant for treating ammonia-containing aquaculture wastewater in a single unit biofilm reactor, ensuring rapid stabilization, environmental protection, and aquaculture sustenance.


Asunto(s)
Amoníaco , Aguas Residuales , Amoníaco/análisis , Acuicultura , Bacillus , Biopelículas , Reactores Biológicos/microbiología , Nitrógeno/análisis , Eliminación de Residuos Líquidos/métodos , Aguas Residuales/análisis
10.
Environ Microbiol ; 24(9): 4256-4273, 2022 09.
Artículo en Inglés | MEDLINE | ID: mdl-34933408

RESUMEN

Heterotrophic nanoflagellates (HNF) and ciliates are major protistan planktonic bacterivores. The term HNF, however, describes a functional guild only and, in contrast to the morphologically distinguishable ciliates, does not reflect the phylogenetic diversity of flagellates in aquatic ecosystems. Associating a function with taxonomic affiliation of key flagellate taxa is currently a major task in microbial ecology. We investigated seasonal changes in the HNF and ciliate community composition as well as taxa-specific bacterivory in four hypertrophic freshwater lakes. Taxa-specific catalyzed reporter deposition-fluorescence in situ hybridization probes assigned taxonomic affiliations to 51%-96% (average ±SD, 75 ± 14%) of total HNF. Ingestion rates of fluorescently labelled bacteria unveiled that HNF contributed to total protist-induced bacterial mortality rates more (56%) than ciliates (44%). Surprisingly, major HNF bacterivores were aplastidic cryptophytes and their Cry1 lineage, comprising on average 53% and 24% of total HNF abundance and 67% and 21% of total HNF bacterivory respectively. Kinetoplastea were important consumers of bacteria during summer phytoplankton blooms, reaching 38% of total HNF. Katablepharidacea (7.5% of total HNF) comprised mainly omnivores, with changing contributions of bacterivorous and algivorous phylotypes. Our results show that aplastidic cryptophytes, accompanied by small omnivorous ciliate genera Halteria/Pelagohalteria, are the major protistan bacterivores in hypertrophic freshwaters.


Asunto(s)
Cilióforos , Lagos , Bacterias/genética , Criptófitas , Ecosistema , Hibridación Fluorescente in Situ , Lagos/microbiología , Filogenia
11.
Mol Cell ; 81(21): 4457-4466.e5, 2021 11 04.
Artículo en Inglés | MEDLINE | ID: mdl-34450043

RESUMEN

The type V-K CRISPR-Cas system, featured by Cas12k effector with a naturally inactivated RuvC domain and associated with Tn7-like transposon for RNA-guided DNA transposition, is a promising tool for precise DNA insertion. To reveal the mechanism underlying target DNA recognition, we determined a cryoelectron microscopy (cryo-EM) structure of Cas12k from cyanobacteria Scytonema hofmanni in complex with a single guide RNA (sgRNA) and a double-stranded target DNA. Coupled with mutagenesis and in vitro DNA transposition assay, our results revealed mechanisms for the recognition of the GGTT protospacer adjacent motif (PAM) sequence and the structural elements of Cas12k critical for RNA-guided DNA transposition. These structural and mechanistic insights should aid in the development of type V-K CRISPR-transposon systems as tools for genome editing.


Asunto(s)
Sistemas CRISPR-Cas , Microscopía por Crioelectrón/métodos , ADN/química , ARN Guía de Kinetoplastida , ARN/química , Secuencias de Aminoácidos , Cianobacterias , ADN/metabolismo , Edición Génica , Técnicas Genéticas , Mutagénesis , Mutagénesis Sitio-Dirigida , Mutación , Conformación Proteica , Dominios Proteicos , Recombinación Genética
12.
Front Microbiol ; 12: 640066, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33746931

RESUMEN

Phagotrophic protists are key players in aquatic food webs. Although sequencing-based studies have revealed their enormous diversity, ecological information on in situ abundance, feeding modes, grazing preferences, and growth rates of specific lineages can be reliably obtained only using microscopy-based molecular methods, such as Catalyzed Reporter Deposition-Fluorescence in situ Hybridization (CARD-FISH). CARD-FISH is commonly applied to study prokaryotes, but less so to microbial eukaryotes. Application of this technique revealed that Paraphysomonas or Spumella-like chrysophytes, considered to be among the most prominent members of protistan communities in pelagic environments, are omnipresent but actually less abundant than expected, in contrast to little known groups such as heterotrophic cryptophyte lineages (e.g., CRY1), cercozoans, katablepharids, or the MAST lineages. Combination of CARD-FISH with tracer techniques and application of double CARD-FISH allow visualization of food vacuole contents of specific flagellate groups, thus considerably challenging our current, simplistic view that they are predominantly bacterivores. Experimental manipulations with natural communities revealed that larger flagellates are actually omnivores ingesting both prokaryotes and other protists. These new findings justify our proposition of an updated model of microbial food webs in pelagic environments, reflecting more authentically the complex trophic interactions and specific roles of flagellated protists, with inclusion of at least two additional trophic levels in the nanoplankton size fraction. Moreover, we provide a detailed CARD-FISH protocol for protists, exemplified on mixo- and heterotrophic nanoplanktonic flagellates, together with tips on probe design, a troubleshooting guide addressing most frequent obstacles, and an exhaustive list of published probes targeting protists.

13.
Appl Biochem Biotechnol ; 193(6): 1617-1630, 2021 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-33496925

RESUMEN

Neem (Azadirachta indica [AI]) is a unique and traditional source of antioxidant and antibacterial compounds. The GC-MS studies revealed that phytoextract of Azadirachta indica comprises a large number of phytocompounds that possess the efficacy of inhibiting the biofilm. It was observed that phytocompounds like catechin showed maximum eradication of biofilm along with the degradation of EPS structural components like carbohydrates and proteins compared to quercetin, nimbolide, nimbin, and azardirachtin, and hence, catechin was proved to be the best against dental plaque-forming bacteria. It was also observed that catechin was able to bring about a marked reduction in quorum sensing (QS) both in Alcaligenes faecalis and Pseudomonas gingivalis dental biofilm-forming strains. The extent of such reduction was maximum for catechin (94.56±2.56% in P. gingivalis & 96.56±2.5 in A. faecalis) in comparison to other bioactive compounds. It was further observed that the bioactive compounds possess the ability to quickly pass across the membrane and bring about inhibition in the DNA and RNA content of the sessile cells. This was further validated by microscopic and in silico studies. Thus, this study revealed that catechin obtained from the phytoextract of AI showed a marked ability to inhibit the dental biofilm and can be used as a natural drug-like compound in treating biofilm-associated chronic infections.


Asunto(s)
Alcaligenes faecalis/fisiología , Azadirachta/química , Biopelículas/efectos de los fármacos , Catequina , Hojas de la Planta/química , Porphyromonas gingivalis/fisiología , Biopelículas/crecimiento & desarrollo , Catequina/química , Catequina/farmacología , Simulación por Computador
14.
Biotechnol Rep (Amst) ; 28: e00532, 2020 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-33024713

RESUMEN

Textile industries are currently not showing much interest in Ramie fibers due to the difficulties associated with their post-harvest downstream processing. The degumming chemicals are often detrimental to the environment upon discharged. Chemical degumming alone results in fibril-released coarse and brittle fibers. This problem has been addressed by combining partial chemical treatment with microbial degumming of the fibers for 72 h at 37 °C using a novel microbial formulation with Bacillus thuringiensis MCC2138 and Bacillus subtilis ABDR01. The extracellular microbial enzyme-based degumming without the release of fibrils produced a durable, soft, and lustrous fiber with higher tensile strength while utilizing fewer chemicals, thereby leading to lower discharge toxicity. The improved texture and strength compared to complete chemical treatment are attributed to even degumming of the fiber ensuring proper spinnability. Through this approach, Ramie is expected to gain visibility in the global textile market, thereby leading to Ramie cultivators' economic benefits.

15.
Environ Microbiol ; 22(11): 4658-4668, 2020 11.
Artículo en Inglés | MEDLINE | ID: mdl-32830371

RESUMEN

Diplonemids are considered marine protists and have been reported among the most abundant and diverse eukaryotes in the world oceans. Recently we detected the presence of freshwater diplonemids in Japanese deep freshwater lakes. However, their distribution and abundances in freshwater ecosystems remain unknown. We assessed abundance and diversity of diplonemids from several geographically distant deep freshwater lakes of the world by amplicon-sequencing, shotgun metagenomics and catalysed reporter deposition-fluorescent in situ hybridization (CARD-FISH). We found diplonemids in all the studied lakes, albeit with low abundances and diversity. We assembled long 18S rRNA sequences from freshwater diplonemids and showed that they form a new lineage distinct from the diverse marine clades. Freshwater diplonemids are a sister-group to a marine clade, which are mainly isolates from coastal and bay areas, suggesting a recent habitat transition from marine to freshwater habitats. Images of CARD-FISH targeted freshwater diplonemids suggest they feed on bacteria. Our analyses of 18S rRNA sequences retrieved from single-cell genomes of marine diplonemids show they encode multiple rRNA copies that may be very divergent from each other, suggesting that marine diplonemid abundance and diversity both have been overestimated. These results have wider implications on assessing eukaryotic abundances in natural habitats by using amplicon-sequencing alone.


Asunto(s)
Euglenozoos/clasificación , Euglenozoos/aislamiento & purificación , Lagos/microbiología , Biodiversidad , Ecosistema , Euglenozoos/citología , Euglenozoos/genética , Hibridación Fluorescente in Situ , Japón , Metagenómica , Filogenia , ARN Ribosómico 18S/genética , Especificidad de la Especie
16.
FEMS Microbiol Ecol ; 96(10)2020 10 06.
Artículo en Inglés | MEDLINE | ID: mdl-32556274

RESUMEN

Heterotrophic nanoflagellates (HNF) are considered as major planktonic bacterivores, however, larger HNF taxa can also be important predators of eukaryotes. To examine this trophic cascading, natural protistan communities from a freshwater reservoir were released from grazing pressure by zooplankton via filtration through 10- and 5-µm filters, yielding microbial food webs of different complexity. Protistan growth was stimulated by amendments of five Limnohabitans strains, thus yielding five prey-specific treatments distinctly modulating protistan communities in 10- versus 5-µm fractions. HNF dynamics was tracked by applying five eukaryotic fluorescence in situ hybridization probes covering 55-90% of total flagellates. During the first experimental part, mainly small bacterivorous Cryptophyceae prevailed, with significantly higher abundances in 5-µm treatments. Larger predatory flagellates affiliating with Katablepharidacea and one Cercozoan lineage (increasing to up to 28% of total HNF) proliferated towards the experimental endpoint, having obviously small phagocytized HNF in their food vacuoles. These predatory flagellates reached higher abundances in 10-µm treatments, where small ciliate predators and flagellate hunters also (Urotricha spp., Balanion planctonicum) dominated the ciliate assemblage. Overall, our study reports pronounced cascading effects from bacteria to bacterivorous HNF, predatory HNF and ciliates in highly treatment-specific fashions, defined by both prey-food characteristics and feeding modes of predominating protists.


Asunto(s)
Cercozoos , Cadena Alimentaria , Animales , Criptófitas , Agua Dulce , Hibridación Fluorescente in Situ
17.
FEBS Lett ; 594(2): 266-277, 2020 01.
Artículo en Inglés | MEDLINE | ID: mdl-31468523

RESUMEN

This study aimed to identify the intracellular binding partner of a unique class of staphylococcal secreted exotoxins called superantigen-like proteins (SSL) from human macrophage and keratinocyte cell lysates. Here, we report that SSL1 specifically binds to human extracellular signal-regulated kinase 2 (hERK2), an important stress-activated kinase in mitogen-activated protein kinase signaling pathways. Western blot and in vitro binding studies with recombinant hERK2 confirmed the binding interaction of SSL1, SSL7, and SSL10 with hERK2. Moreover, the SSLs-hERK2 interaction was validated biochemically by ELISA. Our finding shows that SSLs play a novel role by binding with host cell MAP kinase signaling pathway protein. Understanding the SSL-hERK2 interaction will also provide a basis for designing SSL-based peptide inhibitors of hERK2 in cancer therapy.


Asunto(s)
Interacciones Huésped-Patógeno/genética , Proteína Quinasa 1 Activada por Mitógenos/genética , Staphylococcus aureus/genética , Superantígenos/genética , Secuencia de Aminoácidos/genética , Exotoxinas/genética , Quinasas MAP Reguladas por Señal Extracelular/genética , Humanos , Sistema de Señalización de MAP Quinasas/genética , Unión Proteica/genética , Staphylococcus aureus/patogenicidad
18.
Front Microbiol ; 10: 2375, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31681232

RESUMEN

Kinetoplastid flagellates are generally abundant in the deep sea and recently they were even found to be dominant in the hypolimnion of a deep freshwater lake. Therefore, to understand the distribution of kinetoplastids in deep freshwater lakes, we have collected vertical samples from five lakes in Japan. The abundance of kinetoplastids was enumerated by Catalyzed Reporter Deposition-Fluorescence in situ Hybridization, and the diversity was determined by 18S amplicon sequencing using universal eukaryote and kinetoplastid-specific primers. Kinetoplastids were abundant in the deep waters of all the lakes, contributing up to 53.6% of total nanoeukaryotes. Despite this significant contribution, kinetoplastids remain undetected by amplicon sequencing using universal primers that are widely used in eukaryotic diversity studies. However, they were detected with specific primers, and the communities were characterized by both ubiquitous and lake-specific unique OTUs. Oligotyping of a ubiquitous and dominant OTU revealed the presence of lake-specific sequence types (oligotypes). Remarkably, we also detected diplonemids (a sister group of kinetoplastids and considered to be specific in the marine habitat) using kinetoplastid-specific primers, showing their presence in freshwaters. Underestimation of kinetoplastids and diplonemids using universal primers indicates that euglenozoan flagellates are overlooked in diversity studies worldwide. The present study highlighted the importance of kinetoplastids in the hypolimnion of deep lakes, thereby indicating their role in material cycling in deep waters.

19.
Int. arch. otorhinolaryngol. (Impr.) ; 23(3): 360-370, July-Sept. 2019. tab, graf
Artículo en Inglés | LILACS | ID: biblio-1040029

RESUMEN

Abstract Introduction Schwannomas are benign tumors originating from differentiated Schwann cells. Being the least common intraoral neoplasm of neural origin, it is rarely seen in the palate. The literature lacks an extensive review of intraoral schwannoma confined to the palate. Objective To review previously reported cases of palatal schwannoma along with an illustrative case, and to provide a better insight regarding clinicopathological and radiological features of this neural tumor in a rare intraoral site. Data Synthesis We present a case of palatal schwannoma in a 16-year-old female. An additional 45 cases were identified in 2 medical database searches (PubMed and Google Scholar) published fromthe year 1985 onwards, and from13 countries, in the 5 continents. The ages of the patients ranged from3 to 84 years old. Palatal schwannoma showed a slight predilection to females, with a male/female ratio of ~ 1:1.81. Hard palate involvement is almost twice greater than soft palate involvement. Surgical excision was employed inalmost all of the cases, and recurrence was reported only once. Conclusion Palatal schwannomas, although rare, have been reported both over the hard and the soft palate. They mostly present as a painless, firm, well-encapsulated, slow-growing solitary lesion over the lateral palatal aspect. Imaging can add to suspicion and can delineate a differential diagnosis, but the diagnosis is confirmed by pathological examination. Fine-needle aspiration cytology (FNAC) is almost always inconclusive. Immunohistochemistry can assist in confirming a diagnosis, but is more important to rule out close differentials. Complete surgical excision is the treatment of choice, and recurrence or malignant transformation are extremely rare.


Asunto(s)
Humanos , Masculino , Femenino , Preescolar , Niño , Adolescente , Adulto , Persona de Mediana Edad , Anciano , Anciano de 80 o más Años , Neoplasias Palatinas/patología , Neurilemoma/patología , Tomografía Computarizada por Rayos X , Neurilemoma/cirugía , Neurilemoma/diagnóstico , Neurilemoma/epidemiología
20.
Int Arch Otorhinolaryngol ; 23(3): e360-e370, 2019 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-31360259

RESUMEN

Introduction Schwannomas are benign tumors originating from differentiated Schwann cells. Being the least common intraoral neoplasm of neural origin, it is rarely seen in the palate. The literature lacks an extensive review of intraoral schwannoma confined to the palate. Objective To review previously reported cases of palatal schwannoma along with an illustrative case, and to provide a better insight regarding clinicopathological and radiological features of this neural tumor in a rare intraoral site. Data Synthesis We present a case of palatal schwannoma in a 16-year-old female. An additional 45 cases were identified in 2 medical database searches (PubMed and Google Scholar) published from the year 1985 onwards, and from 13 countries, in the 5 continents. The ages of the patients ranged from 3 to 84 years old. Palatal schwannoma showed a slight predilection to females, with a male/female ratio of ∼ 1:1.81. Hard palate involvement is almost twice greater than soft palate involvement. Surgical excision was employed in almost all of the cases, and recurrence was reported only once. Conclusion Palatal schwannomas, although rare, have been reported both over the hard and the soft palate. They mostly present as a painless, firm, well-encapsulated, slow-growing solitary lesion over the lateral palatal aspect. Imaging can add to suspicion and can delineate a differential diagnosis, but the diagnosis is confirmed by pathological examination. Fine-needle aspiration cytology (FNAC) is almost always inconclusive. Immunohistochemistry can assist in confirming a diagnosis, but is more important to rule out close differentials. Complete surgical excision is the treatment of choice, and recurrence or malignant transformation are extremely rare.

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