Impact of sub-setting the data of the main Limousin beef cattle population on the estimates of across-country genetic correlations.

BACKGROUND: Cattle international genetic evaluations allow the comparison of estimated breeding values (EBV) across different environments, i.e. countries. For international evaluations, across-country genetic correlations (rg) need to be estimated. However, lack of convergence of the estimated parameters and high standard errors of the rg are often experienced for beef cattle populations due to limited across-country genetic connections. Furthermore, using all available genetic connections to estimate rg is prohibitive due to computational constraints, thus sub-setting the data is necessary. Our objective was to investigate and compare the impact of strategies of data sub-setting on estimated across-country rg and their computational requirements. METHODS: Phenotype and pedigree information for age-adjusted weaning weight was available for ten European countries and 3,128,338 Limousin beef cattle males and females. Using a Monte Carlo based expectation-maximization restricted maximum likelihood (MC EM REML) methodology, we estimated across-country rg by using a multi-trait animal model where countries are modelled as different correlated traits. Values of rg were estimated using the full data and four different sub-setting strategies that aimed at selecting the most connected herds from the largest population. RESULTS: Using all available data, direct and maternal rg (standard errors in parentheses) were on average equal to 0.79 (0.14) and 0.71 (0.19), respectively. Direct-maternal within-country and between-country rg were on average equal to - 0.12 (0.09) and 0.00 (0.14), respectively. Data sub-setting scenarios gave similar results: on average, estimated rg were smaller compared to using all data for direct (0.02) and maternal (0.05) genetic effects. The largest differences were obtained for the direct-maternal within-country and between-country rg, which were, on average 0.13 and 0.12 smaller compared to values obtained by using all data. Standard errors always increased when reducing the data, by 0.02 to 0.06, on average. The proposed sub-setting strategies reduced the required computing time up to 22% compared to using all data. CONCLUSIONS: Estimating all 120 across-country rg that are required for beef cattle international evaluations, using a multi-trait MC EM REML approach, is feasible but involves long computing time. We propose four strategies to reduce computational requirements while keeping a multi-trait estimation approach. In all scenarios with data sub-setting, the estimated rg were consistently smaller (mainly for direct-maternal rg) and had larger standard errors.

Effects of genetic group selection against mortality on behavior and peripheral serotonin in domestic laying hens with trimmed and intact beaks.

Severe feather pecking is a maladaptive behavior in laying hens that may result in cannibalism and ultimately death of the victims. Selection methods in which the genetic effect of an animal on the survival of its group members is taken into account, i.e. 'group selection', have been shown to be very effective in reducing mortality due to feather pecking and cannibalism in laying hens. It has been suggested that fearfulness and serotonergic functioning are involved in the causation and development of feather pecking. We investigated effects of selection based on survivability in non-beak trimmed groups on fear-related behavior and peripheral 5-HT concentration and uptake in hens with trimmed or intact beaks, in a 2 x 2 factorial arrangement. Hens from the second generation of the low mortality line showed less fear-related behavior than control line hens. In addition, they displayed higher whole blood 5-HT concentrations and a lower platelet 5-HT uptake, indicating differences in functional activity of the 5-HT system. Beak trimming resulted in lowered levels of fear, and in a reduction of feather damage. Hens with trimmed and intact beaks did, however, not differ in peripheral 5-HT. The results imply that fearfulness and 5-HT activity are related to feather pecking without distinguishing between cause and effect. However, given that selection altered fear-related behaviors and peripheral 5-HT concentration and uptake, whereas beak trimming affected fearfulness and feather damage, but not 5-HT parameters, we suggest that peripheral 5-HT activity might reflect the predisposition to develop severe feather pecking under adverse conditions in laying hens.