Double resonant plasmonic lattices for Raman studies.

We demonstrate radiation induced enhancement of both the in coupling of Raman excitation wavelength and Raman signal in plasmonic nanoparticle lattices. Rectangular nanoparticle lattices show two independently controllable lattice resonances, which we tune to be resonant with both the Raman excitation wavelength and the Raman transitions of rhodamine 6G molecules. We demonstrate that these narrow and intense resonances produced by the nanoparticle lattices allow for Raman transition specific enhancements. The system allows for independent tuning of both resonance conditions, enabling an efficient and versatile platform for Raman studies of various molecules.

Optical screening for presence of banned Sudan III and Sudan IV dyes in edible palm oils.

Due to the proven carcinogenicity of Sudan III and IV dyes, they are considered global public health issues. They are banned in all forms as food colourants. We propose the monitoring of simple and easy-to-measure optical properties of palm oils, such as the refractive indices and spectrophotometric properties, as efficient indicators to detect adulteration. Coupling these results with principal component analysis, excess refractive index, and integration of transmittance introduces a novel detection tool for the authentication of edible palm oil. This opens a new opportunity for accurate handheld devices to detect adulteration and provide control in the field. This work assessed in total of 49 samples, some collected from different parts of Ghana and others, in-house adulterated samples. The Ghana Food and Drugs Authority, who performed a complex and expensive chemical analysis of the samples, confirmed our results with good agreement.

Influence of Fano resonance on SERS enhancement in Fano-plasmonic oligomers.

Plasmonic oligomers can provide profound Fano resonance in their scattering responses. The sub-radiant mode of Fano resonance can result in significant near-field enhancement due to its light trapping capability into the so-called hotspots. Appearance of these highly localized hotspots at the excitation and/or Stokes wavelengths of the analytes makes such oligomers promising SERS active substrates. In this work, we numerically and experimentally investigate optical properties of two disk-type gold oligomers, which have different strength and origin of Fano resonance. Raman analysis of rhodamine 6G and adenine with the presence of the fabricated oligomers clearly indicates that an increment in the strength of Fano resonance can improve the Raman enhancement of an oligomer significantly. Therefore, by suitable engineering of Fano lineshape, one can achieve efficient SERS active substrates with spatially localized hotspots.

Medicinal properties of terpenes found in Cannabis sativa and Humulus lupulus.

Cannabaceae plants Cannabis sativa L. and Humulus lupulus L. are rich in terpenes - both are typically comprised of terpenes as up to 3-5% of the dry-mass of the female inflorescence. Terpenes of cannabis and hops are typically simple mono- and sesquiterpenes derived from two and three isoprene units, respectively. Some terpenes are relatively well known for their potential in biomedicine and have been used in traditional medicine for centuries, while others are yet to be studied in detail. The current, comprehensive review presents terpenes found in cannabis and hops. Terpenes' medicinal properties are supported by numerous in vitro, animal and clinical trials and show anti-inflammatory, antioxidant, analgesic, anticonvulsive, antidepressant, anxiolytic, anticancer, antitumor, neuroprotective, anti-mutagenic, anti-allergic, antibiotic and anti-diabetic attributes, among others. Because of the very low toxicity, these terpenes are already widely used as food additives and in cosmetic products. Thus, they have been proven safe and well-tolerated.

Scalable fabrication of the graphitic substrates for graphene-enhanced Raman spectroscopy.

We propose direct synthesis of ultra-thin graphitic films on a dielectric substrate using sacrificial Ni catalyst layer, which significantly increases the crystallinity of the photoresist pyrolyzed at the temperature of 800 °C and above. A considerable amount of multilayer graphene in the photoresist film pyrolyzed in the presence of the Ni catalyst gives rise to an enhancement of the Raman signal of dye Sudan III molecules deposited on the substrate. We demonstrate comparable enhancement of the Raman signal from Sudan III molecules deposited on the fabricated graphitic substrate and those deposited on graphene, which was conventionally transferred to the silica substrate.

Atmospheric oxidation and carbon contamination of silver and its effect on surface-enhanced Raman spectroscopy (SERS).

Surface-enhanced Raman spectroscopy (SERS) is considered a highly promising technology for different analytical purposes. The applications of SERS are still quite limited due its relatively poor quantitative repeatability and the fact that SERS is very sensitive to oxidation, which is a challenge especially with silver based SERS substrates. Here, the link between these phenomena is investigated by exposing silver SERS substrates to ambient laboratory air. We show that SERS intensity decreases exponentially after the exposure, which consequently leads to an increasing standard deviation (σ) in intensity. Within a five-hour measurement window, the SERS intensity already drops by 60%, while σ triples from 7% to 21%. The SERS results are supplemented by elemental analysis, which shows that oxidation and atmospheric carbon contamination coincide with the rapid SERS intensity decrease. The results emphasize how sensitive SERS is towards atmospheric contamination and how it can also reduce the measurement repeatability - even if the substrates are exposed to air just for a very short period of time.

A solution to the fabrication and tarnishing problems of surface-enhanced Raman spectroscopy (SERS) fiber probes.

Surface enhanced Raman scattering (SERS) fiber probes have enormous potential in optical sensing applications. However, their widespread use has been hindered by two major obstacles: the difficulty of fabricating the required silver nanostructures on optical fibers and the tarnishing of silver, rapidly degrading their sensing properties. Here we propose a solution to these dilemmas by abandoning the use of metallic silver and conventional nanofabrication procedures. Instead, we base our fabrication on chemically stable silver chloride and show that it can be directly grown on the optical fibers without any advanced fabrication equipment. As silver chloride itself is not SERS-active, we demonstrate how to "activate" the probes by turning the crystals into metallic silver nanostructures via photoreduction. We verify that if stored in the non-activated stage, the sensing properties of the structures remain unchanged. Finally, we demonstrate the high sensitivity (signal-to-noise ratio up to 42 ± 3 dB) of the probes in real-time in situ measurements at nanomolar analyte concentrations.

Uniform distribution of Ag particles upon imprinted polymer grating for Raman signal enhancement.

Surface Enhanced Raman Scattering (SERS) is gaining popularity among analytical methods in biosciences and sensor technology since it provides high specificity, non-destructiveness, and the unique fingerprint spectra of the molecules. Historically, glass has been the primary choice as a substrate for SERS, but polymers are attractive due to their plasticity, ease of handling, and their low cost. Herein, the performance of cyclo olefin polymer (COP) as a substrate with 1D subwavelength modulations combined with silver nanoparticles is studied for SERS measurements. These 1D grating structures on polymer are fabricated by hot embossing method followed by deposition of silver nanoparticles (AgNPs) using the drop-casting method. Spatial variations of the substrate surface have been reduced by providing a consistent distribution of hot-spots. We present an analysis of the surface uniformity related to the distribution of Ag particles. We achieve around 8-fold Raman signal enhancements with improved reproducibility in comparison to smooth, unmodulated surfaces with AgNPs. This method of fabrication of SERS substrates is simple and inexpensive compared to the thermal evaporation method (TEM) of metallic layer deposition. It also helps to control the tarnishing effect on metallic surfaces due to silver deposition prior to Raman measurements. This kind of polymer gratings combined with AgNPs have potential applications in medical, biological and chemical sensing, where Raman signal enhancement with high reproducibility is required.

The intrinsically disordered amino-terminal region of human RecQL4: multiple DNA-binding domains confer annealing, strand exchange and G4 DNA binding.

Human RecQL4 belongs to the ubiquitous RecQ helicase family. Its N-terminal region represents the only homologue of the essential DNA replication initiation factor Sld2 of Saccharomyces cerevisiae, and also participates in the vertebrate initiation of DNA replication. Here, we utilized a random screen to identify N-terminal fragments of human RecQL4 that could be stably expressed in and purified from Escherichia coli. Biophysical characterization of these fragments revealed that the Sld2 homologous RecQL4 N-terminal domain carries large intrinsically disordered regions. The N-terminal fragments were sufficient for the strong annealing activity of RecQL4. Moreover, this activity appeared to be the basis for an ATP-independent strand exchange activity. Both activities relied on multiple DNA-binding sites with affinities to single-stranded, double-stranded and Y-structured DNA. Finally, we found a remarkable affinity of the N-terminus for guanine quadruplex (G4) DNA, exceeding the affinities for other DNA structures by at least 60-fold. Together, these findings suggest that the DNA interactions mediated by the N-terminal region of human RecQL4 represent a central function at the replication fork. The presented data may also provide a mechanistic explanation for the role of elements with a G4-forming propensity identified in the vicinity of vertebrate origins of DNA replication.

Horizontal slot waveguide channel for enhanced Raman scattering.

Herein we characterize and experimentally demonstrate a new type of a horizontal slot waveguide structure for remarkably enhanced Raman scattering detection in nanometer-scale void channels. As the measurement sensitivity is one of the key limiting factors in nanofluidic detection, it is essential to search advanced solutions for such detection. Combining an all dielectric resonance waveguide grating and a surface enhanced Raman scattering (SERS) substrate in a close proximity it is possible to create high electromagnetic field energy hot zones within an adjustable slot region. This results in a strong enhancement in Raman scattering. We show the theoretical principles and demonstrate, with rhodamine 6G molecules, an approximately 20-fold enhancement compared to a conventional SERS substrate within the corresponding slot arrangement. We foresee potential applications for the proposed approach in the fields of medical, biological and chemical sensing, where the high detection sensitivity is essential due to integration with nanofluidic devices.

Control of cultured human cells with femtosecond laser ablated patterns on steel and plastic surfaces.

The purpose of the present study is to explore topographical patterns produced with femtosecond laser pulses as a means of controlling the behaviour of living human cells (U2OS) on stainless steel surfaces and on negative plastic imprints (polycarbonate). The results show that the patterns on both types of material strongly affect cell behaviour and are particularly powerful in controlling cell spreading/elongation, localization and orientation. Analysis by fluorescence and scanning electron microscopy shows that on periodic 1D grating structures, cells and cell nuclei are highly elongated and aligned, whereas on periodic 2D grid structures, cell spreading and shape is affected. The results also show that the density and morphology of the cells can be affected. This was observed particularly on pseudo-periodic, coral-like structures which clearly inhibited cell growth. The results suggest that these patterns could be used in a variety of applications among the fields of clinical research and implant design, as well as in diagnosis and in cell and drug research. Furthermore, this article highlights the noteworthy aspects and the unique strengths of the technique and proposes directions for further research.

Strong fluorescence-signal gain with single-excitation-enhancing and emission-directing nanostructured diffraction grating.

A dielectric subwavelength diffraction grating structure is designed and fabricated in order to enhance fluorescence-based detection of biomolecules. Two separate phenomena, enhancement of the local energy densities of the excitation illumination and direction of the emitted signal toward the detector, are examined theoretically and experimentally. 530-fold enhancement of detected signal is achieved compared with the signal from flat surface. Also, changes in polarization and coherence properties of the fluorescent light are found to be remarkable.

Enhancement of laser-induced fluorescence at 473 nm excitation with subwavelength resonant waveguide gratings.

A dielectric subwavelength resonant waveguide grating was designed and fabricated in order to enhance fluorescence of biomolecules. More than 80 times higher laser-induced fluorescence yield was observed from enhanced green fluorescence protein on the structure when compared to same material on a flat surface.

The solution structure of the amino-terminal domain of human DNA polymerase epsilon subunit B is homologous to C-domains of AAA+ proteins.

DNA polymerases alpha, delta and epsilon are large multisubunit complexes that replicate the bulk of the DNA in the eukaryotic cell. In addition to the homologous catalytic subunits, these enzymes possess structurally related B subunits, characterized by a carboxyterminal calcineurin-like and an aminoproximal oligonucleotide/oligosaccharide binding-fold domain. The B subunits also share homology with the exonuclease subunit of archaeal DNA polymerases D. Here, we describe a novel domain specific to the N-terminus of the B subunit of eukaryotic DNA polymerases epsilon. The N-terminal domain of human DNA polymerases epsilon (Dpoe2NT) expressed in Escherichia coli was characterized. Circular dichroism studies demonstrated that Dpoe2NT forms a stable, predominantly alpha-helical structure. The solution structure of Dpoe2NT revealed a domain that consists of a left-handed superhelical bundle. Four helices are arranged in two hairpins and the connecting loops contain short beta-strand segments that form a short parallel sheet. DALI searches demonstrated a striking structural similarity of the Dpoe2NT with the alpha-helical subdomains of ATPase associated with various cellular activity (AAA+) proteins (the C-domain). Like C-domains, Dpoe2NT is rich in charged amino acids. The biased distribution of the charged residues is reflected by a polarization and a considerable dipole moment across the Dpoe2NT. Dpoe2NT represents the first C-domain fold not associated with an AAA+ protein.