Monitoring Spore Dispersal and Early Infections of Diplocarpon coronariae Causing Apple Blotch Using Spore Traps and a New qPCR Method.

Apple blotch (AB) is a major disease of apple in Asia and recently emerged in Europe and the United States. It is caused by the fungus Diplocarpon coronariae (formerly Marssonina coronaria; teleomorph: Diplocarpon mali) and leads to severe defoliation of apple trees in late summer, resulting in reduced yield and fruit quality. To develop effective disease management strategies, a sound knowledge of the pathogen's biology is crucial. Data on the early phase of disease development are scarce: No data on spore dispersal in Europe are available. We developed a highly sensitive TaqMan qPCR method to quantify D. coronariae conidia in spore trap samples. We monitored temporal and spatial dispersal of conidia of D. coronariae and the progress of AB in spring and early summer in an extensively managed apple orchard in Switzerland in 2019 and 2020. Our results show that D. coronariae overwinters in leaf litter, and spore dispersal and primary infections occur in late April and early May. We provide the first results describing early-season dispersal of conidia of D. coronariae, which, combined with the observed disease progress, helps to understand the disease dynamics and will be a basis for improved disease forecast models. Using the new qPCR method, we detected D. coronariae in buds, on bark, and on fruit mummies, suggesting that several apple tissues might serve as overwintering habitats for the fungus, in addition to fallen leaves. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.

Heather (Calluna vulgaris) supplementation does not reduce trapping ability of Duddingtonia flagrans in faeces of Haemonchus contortus infected lambs.

Infection with gastro-intestinal nematodes (GIN) seriously impairs productivity and health of grazing animals. Due to the considerable rise in anthelmintic resistance and the increasing popularity of organic farming, alternative control strategies will replace or complement traditional anthelmintics. The efficacy of two potential alternatives (i) feeding the tanniferous forage heather (Calluna vulgaris) and (ii) the nematophagous fungus Duddingtonia flagrans (isolate FiBL-DF-P14), was tested in a feeding experiment with lambs artificially infected with Haemonchus contortus. Animals received hay supplemented with heather or with a late cut hay (ecohay) as a control feed ad libitum for three weeks. Two doses (1 × 105 and 5 × 104 chlsp/kg LW) of D. flagrans chlamydospores (chlsp) were administered to animals of each roughage treatment and H. contortus larval recovery from faecal cultures was compared with an untreated control (6 animals per D. flagrans-heather combination). Protein, crude fiber and energy contents of ecohay and heather were similar but heather contained approximately twice more fat, four times more lignin and ten times more of all condensed tannin fractions. Heather contained 17.3 mg Proanthocyanidin per g dry matter (DM) while contents of ecohay were 1.7 mg/g DM. Daily average feed intake across both treatments was 1.5 kg DM/animal/day, of which heather/ecohay intake accounted for 0.17/0.19 kg. Overall, there was no significant effect of heather on faecal egg counts (FEC). There was a tendency for a significant interaction between feed supplement and time and a significantly (p = 0.030) lower FEC of nominally 1799 EPG in the heather treatment at the end of the heather feeding period compared with the ecohay treatment. Lambs in this study consumed less heather than grazing sheep in other studies, even though condensed tannin contents were comparably low. Heather supplementation did not affect larval recovery in faecal cultures and trapping ability of D. flagrans. As compared with the untreated control, both doses of D. flagrans reduced larval recovery by 96.2 % and 95.5 %, respectively (p < 0.001), with no significant difference between the doses. The isolate FiBL-DF-P14 was at least as effective as isolates tested in other studies and achieved over 95 % reduction at a low dosage of 5 × 104 chlsp/kg LW. In conclusion, our results confirm the potential of and indicate no negative interactions between both alternative GIN control methods.

Performance and parasitological parameters of steers sequentially grazed with lambs.

In the majority of mixed or sequential gazing studies with sheep, cattle performance remained unaffected. However, the treatment regime of the sheep in these studies was often intense and this may have limited cross-transmission of nematodes from sheep to cattle. We conducted a sequential grazing trial with cattle and sheep with moderate anthelmintic intervention. Twenty first season grazing steers were stratified to 10 couples according to their origin, egg excretion per gram faeces (EPG), metabolic weight and previous weight gain record. Thirty naturally infected ewe lambs were stratified to 5 groups according to metabolic live weight and EPG. Five pairs of the steers were sequentially grazed with the 5 groups of lambs whereas another five pairs of steers served as control. Grazing duration was 70 days with a subsequent indoor period of additional 35 days for the steers. Weight and EPG was recorded 3 days before and 27, 49, 70 and 105 days after trial start. The recorded live-weight of the sequentially grazed steers was 182 ± 14, 191 ± 11, 205 ± 15, 219 ± 15 and 236 ± 18 and the live-weight of the control steers was 180 ± 18, 193 ± 19, 203 ± 21, 217 ± 24 and 234 ± 24 kg respectively. The EPG of the sequentially grazed steers 3 days before grazing start and at day 27, 49, 70 and 105 was 94 ± 100, 95 ± 48, 49 ± 42, 58 ± 41 and 140 ± 73 EPG respectively. The EPG of the control steers at the same dates was 96 ± 82, 98 ± 24, 104 ± 77, 98 ± 71 and 270 ± 287 EPG respectively. The sequentially grazed steer groups did not differ from the control groups with regard to EPG, live weight and daily weight gain. However, the sequentially grazed steers showed elevated pepsinogen levels compared to the control steers (e.g. 3.34 ± 1.05 units tyrosine and 1.29 ± 0.50 units tyrosine after 70 days of grazing, respectively). Larval samples from individual steer coprocultures of both groups were tested PCR-positive for Cooperia oncophora, Ostertagia ostertagi and Haemonchus contortus. We conclude that short term sequential grazing of first season grazing steers with lambs excreting mainly eggs of Haemonchus spp. did not adversely affect steer performance despite increased pepsinogen values. However, hot and dry conditions may have had a suppressive effect on larval development, migration and finally uptake by the steers.

A qPCR Assay for the Fast Detection and Quantification of Colletotrichum lupini.

White lupin (Lupinus albus) represents an important legume crop in Europe and other parts of the world due to its high protein content and potential for low-input agriculture. However, most cultivars are susceptible to anthracnose caused by Colletotrichum lupini, a seed- and air-borne fungal pathogen that causes severe yield losses. The aim of this work was to develop a C. lupini-specific quantitative real-time TaqMan PCR assay that allows for quick and reliable detection and quantification of the pathogen in infected seed and plant material. Quantification of C. lupini DNA in dry seeds allowed us to distinguish infected and certified (non-infected) seed batches with DNA loads corresponding to the disease score index and yield of the mother plants. Additionally, C. lupini DNA could be detected in infected lupin shoots and close to the infection site, thereby allowing us to study the disease cycle of this hemibiotrophic pathogen. This qPCR assay provides a useful diagnostic tool to determine anthracnose infection levels of white lupin seeds and will facilitate the use of seed health assessments as a strategy to reduce the primary infection source and spread of this disease.

A Novel Real Time PCR Method for the Detection and Quantification of Didymella pinodella in Symptomatic and Asymptomatic Plant Hosts.

Didymella pinodella is the major pathogen of the pea root rot complex in Europe. This wide host range pathogen often asymptomatically colonizes its hosts, making the control strategies challenging. We developed a real-time PCR assay for the detection and quantification of D. pinodella based on the TEF-1 alpha gene sequence alignments. The assay was tested for specificity on a 54-isolate panel representing 35 fungal species and further validated in symptomatic and asymptomatic pea and wheat roots from greenhouse tests. The assay was highly consistent across separate qPCR reactions and had a quantification/detection limit of 3.1 pg of target DNA per reaction in plant tissue. Cross-reactions were observed with DNA extracts of five Didymella species. The risk of cross contamination, however, is low as the non-targets have not been associated with pea previously and they were amplified with at least 1000-fold lower sensitivity. Greenhouse inoculation tests revealed a high correlation between the pathogen DNA quantities in pea roots and pea root rot severity and biomass reduction. The assay also detected D. pinodella in asymptomatic wheat roots, which, despite the absence of visible root rot symptoms, caused wheat biomass reduction. This study provides new insights into the complex life style of D. pinodella and can assist in better understanding the pathogen survival and spread in the environment.

Eudesmane Sesquiterpenes from Verbesina lanata with Inhibitory Activity against Grapevine Downy Mildew.

An in-house library of more than 3000 extracts of plant and fungal origin was screened against some major plant pathogens. As one of the hits, an ethyl acetate extract from inflorescences of Verbesina lanata showed significant inhibitory activity in vitro against grapevine downy mildew (Plasmopara viticola), with a MIC100 value of 35 µg/mL. An emulsifiable concentrate formulation with 50 mg/g of the extract was developed for in vivo evaluation. A suspension of the formulation containing 1 mg/mL of extract lowered leaf surface infection of grapevine seedling by 82% compared to the nontreated control. With the aid of HPLC-based activity profiling, the antifungal activity was correlated with a series of lipophilic compounds. Preparative isolation by a combination of chromatographic techniques afforded 16 eudesmane sesquiterpenes including eight new congeners. Nine compounds were obtained in sufficient quantities to be tested in vitro and were found to inhibit the zoospore activity of P. viticola with MIC100 values ranging from 4 to 50 µg/mL. The two major compounds, 6ß-cinnamoyloxy-4ß,9ß,15-trihydroxyeudesmane (9) and 6ß-cinnamoyloxy-1ß,15-dihydroxyeudesm-4-en-3-one (13), showed MIC100 values of 5 and 31 µg/mL, respectively.

Tracing of Two Pseudomonas Strains in the Root and Rhizoplane of Maize, as Related to Their Plant Growth-Promoting Effect in Contrasting Soils.

TaqMan-based quantitative PCR (qPCR) assays were developed to study the persistence of two well-characterized strains of plant growth-promoting rhizobacteria (PGPR), Pseudomonas fluorescens Pf153 and Pseudomonas sp. DSMZ 13134, in the root and rhizoplane of inoculated maize plants. This was performed in pot experiments with three contrasting field soils (Buus, Le Caron and DOK-M). Potential cross-reactivity of the qPCR assays was assessed with indigenous Pseudomonas and related bacterial species, which had been isolated from the rhizoplane of maize roots grown in the three soils and then characterized by Matrix-Assisted Laser Desorption Ionization (MALDI) Time-of-Flight (TOF) mass spectrometry (MS). Sensitivity of the qPCR expressed as detection limit of bacterial cells spiked into a rhizoplane matrix was 1.4 × 102 CFU and 1.3 × 104 CFU per gram root fresh weight for strain Pf153 and DSMZ 13134, respectively. Four weeks after planting and inoculation, both strains could readily be detected in root and rhizoplane, whereas only Pf153 could be detected after 8 weeks. The colonization rate of maize roots by strain Pf153 was significantly influenced by the soil type, with a higher colonization rate in the well fertile and organic soil of Buus. Inoculation with strain DSMZ 13134, which colonized roots and rhizoplane to the same degree, independently of the soil type, increased yield of maize, in terms of biomass accumulation, only in the acidic soil of Le Caron, whereas inoculation with strain Pf153 reduced yield in the soil Buus, despite of its high colonization rate and persistence. These results indicate that the colonization rate and persistence of inoculated Pseudomonas strains can be quantitatively assessed by the TaqMan-based qPCR technique, but that it cannot be taken for granted that inoculation with a well-colonizing and persistent Pseudomonas strain has a positive effect on yield of maize.

Efficacy of a Juncus effusus extract on grapevine and apple plants against Plasmopara viticola and Venturia inaequalis, and identification of the major active constituent.

BACKGROUND: There is growing demand to replace chemical pesticides with alternatives owing to concerns related to impacts on human health and the environment. Plant-derived plant protection products could provide sustainable and environmentally friendly alternatives to chemical products. The aim of this study was to identify plant and fungal extracts with so far unknown activity against important plant pathogens by in vitro screening of a library of more than 3000 extracts. RESULTS: Several plant extracts with promising in vitro fungicidal activity (MIC100 ≤ 50 µg mL(-1) ) towards one or several of the investigated pathogens (Venturia ineaqualis, Phytophthora infestans, Plasmopara viticola) were identified by the screening. One of the hits, an ethyl acetate extract of Juncus effusus L. medulla, was further investigated, and dehydroeffusol (DHEF) was identified as its main active constituent. On susceptible grapevine and apple seedlings, efficacies of up to 100% were reached with the extract (EC50 123 or 156 µg mL(-1) ) and with DHEF (EC50 18 or 21 µg mL(-1) ) against P. viticola and V. inaequalis respectively. CONCLUSIONS: Our results demonstrate that plants can provide promising alternatives for integrated and organic farming. J. effusus shows high efficacy at low concentrations and, as an abundant perennial species, is an interesting candidate for the development of a novel plant protection product. © 2015 Society of Chemical Industry.