Estimating risk to prevent damage: predicting and preventing coypu (Myocastor coypus) damage to transport infrastructure.

BACKGROUND: A major impact of invasive Myocastor coypus in their introduction range is the collapse of riverbanks and nearby infrastructure, such as railway lines, due to the species' burrowing activities. Because widespread implementation of preventive measures along watercourses is unfeasible, identifying susceptible areas is key to guide targeted management actions. This study used species-habitat models to: (i) identify local environmental features of the railway line/watercourse intersections (RLWIs) that make them particularly susceptible to coypu damage, and (ii) predict species occurrence probability over a wide lowland-hilly area of northern Italy (Lombardy) to identify priority areas for monitoring. RESULTS: Local-scale models identified that the RLWIs most susceptible to burrowing were those surrounded by arable land with interspersed hedgerows locally characterized by high herbaceous vegetation and clay soil. In urbanized areas and areas of intensive agriculture, coypu dens were generally located significantly closer to the railway, increasing the risk of collapse. A landscape-scale species distribution model showed that lowland areas along major rivers and lake shores, and also agricultural areas with a dense minor hydrographic network, particularly in the southeast of the study area, are more likely to be occupied by coypu. CONCLUSION: Local-scale models showed that specific environmental characteristics increase the risk of burrowing near RLWIs. The landscape-scale model allowed us to predict which areas require thorough monitoring of RLWIs to search for such local characteristics to implement preventive management measures. The proposed model-based framework can be applied to any geographical context to predict and prevent coypu damage. © 2024 Society of Chemical Industry.

Odonate diversity of a highly urbanised region: An annotated checklist of the damselflies and dragonflies (Insecta, Odonata) of Lario and Brianza (Lombardy, N Italy).

Background: Given their sensitivity to environmental alterations, odonates act as reliable bioindicators to assess the effects of changes in freshwater ecosystems and associated terrestrial habitats. The region comprised between Lario and Brianza (Provinces of Como, Lecco and Monza and Brianza - Lombardy, N Italy) is one of the most urbanised of the Italian peninsula and large parts of its territory have been heavily altered, especially at low elevation. Despite this pervasive anthropogenisation, the area is still characterised by a considerable variety of freshwater habitats, possibly harbouring rich odonate communities, which, however, have been never thoroughly investigated. This study aimed to produce the first commented checklist of the Odonata of this region, accompanied by distribution maps. New information: The work is based on 12,093 records spanning from 1981 and 2022, derived from literature (289), revision of collections (42), citizen-science projects (1249) and unpublished data from the authors and their collaborators (10,513). Overall, fifty-five species occur - or occurred in the past - in the study area (20 Zygoptera and 35 Anisoptera). One species, Erythrommanajas, was confirmed exclusively before 1978, while seven species (Lestesbarbarus, Coenagrionscitulum, Aeshnaaffinis, Anaxephippiger, Somatochloraarctica, Sympetrummeridionale and Trithemisannulata) have been recorded only after 2000. Records referring to Chalcolestesparvidens and Sympetrumflaveolum were considered questionable and excluded from the checklist. A list of species for each protected site is additionally provided. This work highlighted the importance for odonates of Lario and Brianza Regions from a national perspective, in particular for species of conservation priority/interest, such as Sympecmapaedisca, Oxygastracurtisii and Sympetrumdepressiusculum.

Main roads and land cover shaped the genetic structure of a Mediterranean island wild boar population.

Patterns of genetic differentiation within and among animal populations might vary due to the simple effect of distance or landscape features hindering gene flow. An assessment of how landscape connectivity affects gene flow can help guide management, especially in fragmented landscapes. Our objective was to analyze population genetic structure and landscape genetics of the native wild boar (Sus scrofa meridionalis) population inhabiting the island of Sardinia (Italy), and test for the existence of Isolation-by-Distance (IBD), Isolation-by-Barrier (IBB), and Isolation-by-Resistance (IBR). A total of 393 Sardinian wild boar samples were analyzed using a set of 16 microsatellite loci. Signals of genetic introgression from introduced non-native wild boars or from domestic pigs were revealed by a Bayesian cluster analysis including 250 reference individuals belonging to European wild populations and domestic breeds. After removal of introgressed individuals, genetic structure in the population was investigated by different statistical approaches, supporting a partition into five discrete subpopulations, corresponding to five geographic areas on the island: north-west (NW), central west (CW), south-west (SW), north-central east (NCE), and south-east (SE). To test the IBD, IBB, and IBR hypotheses, we optimized resistance surfaces using genetic algorithms and linear mixed-effects models with a maximum likelihood population effects parameterization. Landscape genetics analyses revealed that genetic discontinuities between subpopulations can be explained by landscape elements, suggesting that main roads, urban settings, and intensively cultivated areas are hampering gene flow (and thus individual movements) within the Sardinian wild boar population. Our results reveal how human-transformed landscapes can affect genetic connectivity even in a large-sized and highly mobile mammal such as the wild boar, and provide crucial information to manage the spread of pathogens, including the African Swine Fever virus, endemic in Sardinia.

Quantitative selection of focal birds and mammals in higher-tier risk assessment: An application to rice cultivations.

European Pesticide Registration requires a risk assessment (RA) for nontarget organisms according to EU Regulation. European Authorities have developed Guidance Documents (GDs) for RA considering exposure scenarios for the required organisms typical for terrestrial crops. The "Birds and Mammals EFSA GD" allows using multiple sources of information to extract information on species frequency needed in identifying focal species for higher-tier RA. We developed an analytical framework to calculate species frequency according to availability of species and habitat quantitative data. Since the exposure scenarios reported in the EFSA GD are inconsistent for rice, we tested the method on birds and mammals in a portion of the largest rice-cultivated area of Europe, the Italian Po floodplain. We derived three lists of focal species: (a) an expert-based list based on land-use data only, which can be useful for a preliminary exploration of potential candidate species; (b) a list derived from the interpolation of species data only, which reflects actual species frequency in rice fields; and (c) a list obtained by a species distribution model based on species monitoring and land-use data, which account for species selectivity for rice crops and are transferable to other contexts. Focal species were identified for crop-specific diet-foraging guilds, to build specific exposure scenarios to assess the risk from pesticides application in rice fields. The partial differences between our lists and those previously proposed highlight the need for identifying national lists, which can vary according to study area, biogeographic region and exposure scenarios. The application of the proposed method in European rice-producing countries should lead to crop-specific lists, which could then be integrated to obtain a flexible European list applicable to higher-tier RA. Integr Environ Assess Manag 2022;18:1020-1034. © 2021 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

Species Traits Drive Long-Term Population Trends of Common Breeding Birds in Northern Italy.

Long-term population trends are considerable sources of information to set wildlife conservation priorities and to evaluate the performance of management actions. In addition, trends observed in functional groups (e.g., trophic guilds) can provide the foundation to test specific hypotheses about the drivers of the observed population dynamics. The aims of this study were to assess population trends of breeding birds in Lombardy (N Italy) from 1992 to 2019 and to explore the relationships between trends and species sharing similar ecological and life history traits. Trends were quantified and tested for significance by weighted linear regression models and using yearly population indices (median and 95% confidence interval) predicted through generalized additive models. Results showed that 45% of the species increased, 24% decreased, and 31% showed non-significant trends. Life history traits analyses revealed a general decrease of migrants, of species with short incubation period and of species with high annual fecundity. Ecological traits analyses showed that plant-eaters and species feeding on invertebrates, farmland birds, and ground-nesters declined, while woodland birds increased. Further studies should focus on investigation of the relationship between long-term trends and species traits at large spatial scales, and on quantifying the effects of specific drivers across multiple functional groups.

Hierarchies and Dominance Behaviors in European Pond Turtle (Emys orbicularis galloitalica) Hatchlings in a Controlled Environment.

Few species of reptiles are known to establish stable social structures and among these, chelonians provided scarce and conflicting results. Moreover, studies on turtles are usually performed on adult individuals. In this study, we checked whether and when hatchlings of the European Pond Turtle (Emys orbicularis galloitalica) established stable hierarchical structures in their first year of life, whether hierarchies were stable in time and how steady they were. We also verified whether social ranks were associated to the individuals' size. We observed dyadic interactions daily within three small groups of turtles reared in a controlled environment for seven months. After two months, the hatchlings started to interact and progressively established stable hierarchical structures. However, the effectiveness of the three types of observed aggressive behaviors in reversing social ranks was low and the resulting hierarchies were flat. We did not find a significant effect of the turtles' size on their interactions' outcome and hierarchy structure. Our results provide clear evidence of the development and the characteristics of social behaviors in young reptiles in captivity. This study could be a starting point for investigating social structures in wild populations.

Combining ensemble models and connectivity analyses to predict wolf expected dispersal routes through a lowland corridor.

The Italian wolf (Canis lupus italicus) population has remained isolated South of the Alps for the last few thousand years. After a strong decline, the species has recolonized the Apennines and the Western Alps, while it is currently struggling to colonize the Eastern Alps. Recently, the species was detected in a lowland park connecting the Northern Apennines to the Central Alps. If the park was able to sustain a net wolf dispersal flow, this could significantly boost the connection with the Eastern Alps and the Dinaric-Balkan population. We investigated the suitability of the park as a functional ecological corridor for the wolf through the unhospitable lowland of Northern Italy. We collected wolf occurrence data in two study areas. We modeled species distribution running a separate ensemble model for each study area and then merging the output of the models to obtain an integrated suitability map. We used this map to identify corridors for the wolf adopting a factorial least-cost path and a cumulative resistant kernel approach. The connectivity models showed that only two corridors exist in the lowland areas between the Northern Apennines and the Central Alps. The Western corridor is a blind route, while the eastern corridor passes through the park and has a continuous course. However, the models also revealed a scarce resilience of corridor connectivity in the passageways between the park and the Apennines and the Prealps, which suggests that urgent management actions are necessary to ensure the future functionality of this important corridor.

Species specialization limits movement ability and shapes ecological networks: the case study of 2 forest mammals.

To counteract the negative effects of forest fragmentation on wildlife, it is crucial to maintain functional ecological networks. We identified the ecological networks for 2 mammals with very different degrees of forest specialization, the European badger Meles meles and the Roe deer Capreolus capreolus, by differentiating 4 agroforestry elements as either nodes or connectivity elements, and by defining the distance that provides the functional connectivity between fragments. Species occurrence data were collected in a wide agroecosystem in northern Italy. To test the role of hedgerows, traditional poplar cultivations, short rotation coppices, and reforestations as ecological network elements for the 2 species we applied the method of simulated species perceptions of the landscape (SSPL), comparing the ability of different SSPLs to explain the observed species distribution. All analyses were repeated considering different scenarios of species movement ability through the matrix. Model outputs seem to show that the specialist and highly mobile Roe deer has the same movement ability throughout the matrix (2 km) as the European badger, a smaller, but generalist species. The ecological network identified for the European badger was widespread throughout the area and was composed of woodlands, poplar cultivations and hedgerows as nodes and short rotation coppices as connectivity elements. Conversely, the ecological network of the Roe deer was mostly limited to the main forest areas and was composed of woodlands, poplar cultivations and reforestations as nodes and short rotation coppices and hedgerows as connectivity elements. The degree of forest specialization strongly affects both species perception of habitat and movement ability throughout the matrix, regardless of species size. This has important implications for species conservation.

Winners and losers: How the elevational range of breeding birds on Alps has varied over the past four decades due to climate and habitat changes.

Climate warming and habitat transformation are widely recognized as worrying threatening factors. Understanding the individual contribution of these two factors to the change of species distribution could be very important in order to effectively counteract the species range contraction, especially in mountains, where alpine species are strongly limited in finding new areas to be colonized at higher elevations. We proposed a method to disentangle the effects of the two drivers of range change for breeding birds in Italian Alps, in the case of co-occurring climate warming and shrub and forest encroachment. For each species, from 1982 to 2017, we related the estimated yearly elevational distribution of birds to the correspondent overall average of the daily minimum temperatures during the breeding season and the estimated amount of shrubs and forest cover. Using a hierarchical partitioning approach, we assessed the net contribution (i.e., without the shared effect) of each driver. Both temperature and shrub and forest cover showed a positive trend along the time series and resulted the most likely causes of the significant elevational displacement for 21 of the 29 investigated birds. While shrub and forest cover was found to be an important driver of the expansion of forest bird range toward higher elevations, the effect of temperature on favouring the colonization of previously climatically unsuitable forests at higher elevations was not negligible. Shrub and forest expansion resulted the main driver of the range contraction for edge and open habitat species, which suffered a distribution shrinkage at their lower elevational boundary. In light of climate warming, these results highlighted how the net range loss for edge and open habitat species, caused by shrub and forest encroachment consequent to land abandonment, should be counteracted by implementing proper conservation management strategies and promoting sustainable economic activities in rangeland areas.

Ecological connectivity assessment in a strongly structured fire salamander (Salamandra salamandra) population.

Small populations are more prone to extinction if the dispersal among them is not adequately maintained by ecological connections. The degree of isolation between populations could be evaluated measuring their genetic distance, which depends on the respective geographic (isolation by distance, IBD) and/or ecological (isolation by resistance, IBR) distances. The aim of this study was to assess the ecological connectivity of fire salamander Salamandra salamandra populations by means of a landscape genetic approach. The species lives in broad-leaved forest ecosystems and is particularly affected by fragmentation due to its habitat selectivity and low dispersal capability. We analyzed 477 biological samples collected in 47 sampling locations (SLs) in the mainly continuous populations of the Prealpine and Eastern foothill lowland (PEF) and 10 SLs in the fragmented populations of the Western foothill (WF) lowland of Lombardy (northern Italy). Pairwise genetic distances (Chord distance, DC) were estimated from allele frequencies of 16 microsatellites loci. Ecological distances were calculated using one of the most promising methodology in landscape genetics studies, the circuit theory, applied to habitat suitability maps. We realized two habitat suitability models: one without barriers (EcoD) and a second one accounting for the possible barrier effect of main roads (EcoDb). Mantel tests between distance matrices highlighted how the Log-DC in PEF populations was related to log-transformed geographic distance (confirming a prevalence of IBD), while it was explained by the Log-EcoD, and particularly by the Log-EcoDb, in WF populations, even when accounting for the confounding effect of geographic distance (highlighting a prevalence of IBR). Moreover, we also demonstrated how considering the overall population, the effect of Euclidean or ecological distances on genetic distances acting at the level of a single group (PEF or WF populations) could not be detected, when population are strongly structured.

Polymorphism at the Clock gene predicts phenology of long-distance migration in birds.

Dissecting phenotypic variance in life history traits into its genetic and environmental components is at the focus of evolutionary studies and of pivotal importance to identify the mechanisms and predict the consequences of human-driven environmental change. The timing of recurrent life history events (phenology) is under strong selection, but the study of the genes that control potential environmental canalization in phenological traits is at its infancy. Candidate genes for circadian behaviour entrained by photoperiod have been screened as potential controllers of phenological variation of breeding and moult in birds, with inconsistent results. Despite photoperiodic control of migration is well established, no study has reported on migration phenology in relation to polymorphism at candidate genes in birds. We analysed variation in spring migration dates within four trans-Saharan migratory species (Luscinia megarhynchos; Ficedula hypoleuca; Anthus trivialis; Saxicola rubetra) at a Mediterranean island in relation to Clock and Adcyap1 polymorphism. Individuals with larger number of glutamine residues in the poly-Q region of Clock gene migrated significantly later in one or, respectively, two species depending on sex and whether the within-individual mean length or the length of the longer Clock allele was considered. The results hinted at dominance of the longer Clock allele. No significant evidence for migration date to covary with Adcyap1 polymorphism emerged. This is the first evidence that migration phenology is associated with Clock in birds. This finding is important for evolutionary studies of migration and sheds light on the mechanisms that drive bird phenological changes and population trends in response to climate change.

Detecting a hierarchical genetic population structure: the case study of the Fire Salamander (Salamandra salamandra) in Northern Italy.

The multistep method here applied in studying the genetic structure of a low dispersal and philopatric species, such as the Fire Salamander Salamandra salamandra, was proved to be effective in identifying the hierarchical structure of populations living in broad-leaved forest ecosystems in Northern Italy. In this study, 477 salamander larvae, collected in 28 sampling populations (SPs) in the Prealpine and in the foothill areas of Northern Italy, were genotyped at 16 specie-specific microsatellites. SPs showed a significant overall genetic variation (Global F ST = 0.032, P < 0.001). The genetic population structure was assessed by using STRUCTURE 2.3.4. We found two main genetic groups, one represented by SPs inhabiting the Prealpine belt, which maintain connections with those of the Eastern foothill lowland (PEF), and a second group with the SPs of the Western foothill lowland (WF). The two groups were significantly distinct with a Global F ST of 0.010 (P < 0.001). While the first group showed a moderate structure, with only one divergent SP (Global F ST = 0.006, P < 0.001), the second group proved more structured being divided in four clusters (Global F ST = 0.017, P = 0.058). This genetic population structure should be due to the large conurbations and main roads that separate the WF group from the Prealpine belt and the Eastern foothill lowland. The adopted methods allowed the analysis of the genetic population structure of Fire Salamander from wide to local scale, identifying different degrees of genetic divergence of their populations derived from forest fragmentation induced by urban and infrastructure sprawl.