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1.
Mol Med Rep ; 9(4): 1197-203, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24481726

RESUMEN

The anti-inflammatory mechanism of 5-hydroxy-3,6,7,8,3',4'-hexamethoxyflavone (5HHMF), a polyhydroxyflavone isolated from the marine algae Hizikia fusiforme, was investigated in RAW 264.7 murine macrophage cells. Western blot and reverse transcriptase PCR analyses indicated that adding 5HHMF to cultured cells significantly reduced the production of nitric oxide and prostaglandin E2 and downregulated inducible nitric oxide synthase (iNOS) and cyclooxygenase-2 (COX-2) expression in lipopolysaccharide (LPS)-stimulated RAW 264.7 cells. In addition, 5HHMF inhibited the release of pro-inflammatory cytokines, such as tumor necrosis factor-α and interleukin-1ß, and decreased the transcriptional levels. In particular, 5HHMF significantly inhibited the LPS-induced nuclear factor-κB (NF-κB) translocation from the cytosol to the nucleus, which was associated with the abrogation of inhibitory IκBα degradation and subsequent decreases in nuclear p65 levels. In conclusion, these results suggested that the anti-inflammatory activities of 5HHMF may be attributed to the inhibition of iNOS, COX-2 and cytokine expression by attenuating NF-κB activation via IκBα degradation in macrophages.


Asunto(s)
Antiinflamatorios/farmacología , Flavonas/farmacología , Lipopolisacáridos/farmacología , Macrófagos/metabolismo , FN-kappa B/metabolismo , Animales , Muerte Celular/efectos de los fármacos , Línea Celular , Supervivencia Celular/efectos de los fármacos , Ciclooxigenasa 2/metabolismo , Dinoprostona/biosíntesis , Flavonas/química , Interleucina-1beta/biosíntesis , Macrófagos/citología , Macrófagos/efectos de los fármacos , Macrófagos/enzimología , Ratones , Óxido Nítrico/biosíntesis , Óxido Nítrico Sintasa de Tipo II/metabolismo , Sustancias Protectoras/farmacología , Transducción de Señal/efectos de los fármacos , Factor de Necrosis Tumoral alfa/biosíntesis
2.
J Microbiol Biotechnol ; 23(2): 156-60, 2013 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-23412056

RESUMEN

Culture supernatants of splenocytes from C57BL/6 mice were exposed to 0.3, 1.0, and 3.0 microg/ml cordycepin plus 3.0 microg/ml lipopolysaccharide (LPS) to investigate the effects of cordycepin (3'-deoxyadenosine) on the production of inflammatory cytokines. Co-administration of 3.0 microg/ml cordycepin with LPS in cultured murine spleen cells significantly diminished the expression of the inflammatory cytokines tumor necrosis factor-alpha and interleukin-6 (IL-6) in a time-dependent manner. Expression of the inflammatory cytokine IL-17A was substantially down-regulated in a time- dependent manner at all cordycepin concentrations. These findings suggest that cordycepin down-regulates the immediate hypersensitivity reaction stimulated by LPS.


Asunto(s)
Desoxiadenosinas/metabolismo , Inmunosupresores/metabolismo , Interleucina-17/biosíntesis , Interleucina-6/biosíntesis , Factor de Necrosis Tumoral alfa/biosíntesis , Animales , Células Cultivadas , Leucocitos Mononucleares/efectos de los fármacos , Leucocitos Mononucleares/inmunología , Lipopolisacáridos/inmunología , Ratones , Ratones Endogámicos C57BL , Bazo/inmunología
3.
Int J Oncol ; 42(3): 1036-44, 2013 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-23292300

RESUMEN

Cordycepin is the main functional component of Cordyceps militaris, which has been widely used in oriental traditional medicine. This compound has been shown to possess many pharmacological properties, such as enhancing the body's immune function, and anti-inflammatory, anti-aging and anticancer effects. In the present study, we investigated the apoptotic effects of cordycepin in human prostate carcinoma cells. We found that treatment with cordycepin significantly inhibited cell growth by inducing apoptosis in PC-3 cells. Apoptosis induction of PC-3 cells by cordycepin showed correlation with proteolytic activation of caspase-3 and -9, but not caspase-8, and concomitant degradation of poly (ADP-ribose) polymerases, collapse of the mitochondrial membrane potential (MMP). In addition, cordycepin treatment resulted in an increase of the Bax/Bcl-2 (or Bcl-xL) ratio, downregulation of inhibitor of apoptosis protein (IAP) family members, Bax conformational changes, and release of cytochrome c from the mitochondria to the cytosol. The cordycepin-induced apoptosis was also associated with the generation of intracellular reactive oxygen species (ROS). However, the quenching of ROS generation with antioxidant N-acetyl-L-cysteine conferred significant protection against cordycepin-elicited ROS generation, disruption of the MMP, modulation of Bcl-2 and IAP family proteins, caspase-3 and -9 activation and apoptosis. This indicates that the cellular ROS generation plays a pivotal role in the initiation of cordycepin-triggered apoptotic death. Collectively, our findings suggest that cordycepin is a potent inducer of apoptosis of prostate cancer cells via a mitochondrial-mediated intrinsic pathway and that this agent may be of value in the development of a potential therapeutic candidate for both the prevention and treatment of cancer.


Asunto(s)
Antineoplásicos/farmacología , Apoptosis , Desoxiadenosinas/farmacología , Neoplasias de la Próstata/tratamiento farmacológico , Especies Reactivas de Oxígeno/metabolismo , Acetilcisteína/farmacología , Caspasa 3/metabolismo , Caspasa 8/metabolismo , Caspasa 9/metabolismo , Línea Celular Tumoral , Citocromos c/metabolismo , Regulación hacia Abajo , Activación Enzimática , Humanos , Proteínas Inhibidoras de la Apoptosis/metabolismo , Masculino , Potencial de la Membrana Mitocondrial/efectos de los fármacos , Mitocondrias/metabolismo , Poli(ADP-Ribosa) Polimerasas/metabolismo , Neoplasias de la Próstata/metabolismo , Proteínas Proto-Oncogénicas c-bcl-2/biosíntesis , Proteína X Asociada a bcl-2/biosíntesis , Proteína bcl-X/biosíntesis
4.
J Microbiol Biotechnol ; 22(12): 1665-72, 2012 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-23221529

RESUMEN

An 80% ethanol extract of Hizikia fusiforme was obtained and followed by successive fractionation using the organic solvents n-hexane, ethyl acetate, and n-butanol to identify the antioxidative substance. The aqueous part of the nbutanol fractionation step, showing high antioxidative activity, was subjected to reverse-phase liquid chromatography. As a result, a substance purified from a BB-2 fraction showed high antioxidative activity. The m/z 419 [M+H] molecular ion peak in the fraction was observed by the analysis of the ESI-LC/MS spectrum. By the analysis of 1H NMR (500 MHz, DMSO-d6) and 13C NMR (125 MHz, DMSO-d6) spectra, a unique compound of the fraction was biochemically identified as a 5-hydroxy-3,6,7,8,3´,4´- hexamethoxyflavone (5HHMF). We also investigated the effect of 5HHMF on human gastric AGS carcinoma cells. Western blot analysis suggested that the flavone substantially increased the levels of the death receptor-associated apoptosis mediators Fas, Fas L, FADD, TRADD, and DR4 in a concentration-dependent manner. The levels of Fas, Fas L, TRADD, and DR4 in the cells treated with 5HHMF (5 microgram/ml) were approximately 26.4-, 12.8-, 6.7-, and 9.8- times higher than those of non-treated cells, respectively. Of note, the level of FADD protein in the cells exposed to 5HHMF (1 microgram/ml) increased approximately 9.6-times. In addition, the cleavage of caspase-3, -8, and -9 in cultured AGS cells treated with 5HHMF was significantly confirmed. Therefore, our results suggest that 5HHMF from H. fusiforme is involved in the induction of death receptor-associated apoptosis mediators in human gastric AGS carcinoma cells.


Asunto(s)
Apoptosis/efectos de los fármacos , Flavonas/farmacología , Phaeophyceae/química , Extractos Vegetales/farmacología , Neoplasias Gástricas/tratamiento farmacológico , Western Blotting , Caspasas/metabolismo , Línea Celular Tumoral , Supervivencia Celular/efectos de los fármacos , Proteínas Adaptadoras de Señalización del Receptor del Dominio de Muerte/metabolismo , Flavonas/química , Flavonas/aislamiento & purificación , Humanos , Extractos Vegetales/química , Extractos Vegetales/aislamiento & purificación , Especies Reactivas de Oxígeno/metabolismo , Neoplasias Gástricas/metabolismo , Neoplasias Gástricas/patología
5.
J Microbiol Biotechnol ; 22(8): 1161-4, 2012 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-22713995

RESUMEN

Cordycepin was purified from a mushroom, Cordyceps militaris, and its effect on Th1 and Th2 cytokines was examined. The level of cytokine induction in mouse splenocytes was estimated after co-inoculation of purified cordycepin and LPS. When 5 microg/ml of purified cordycepin was exposed to mouse splenocytes for 72 h, the level of a Th1 cytokine IL-12 increased by 2.9-fold. The addition of the purified cordycepin to splenocytes also increased the level of Th2 cytokines, IL-4 and IL-10, by 1.9- and 1.8- fold, respectively. Therefore, cordycepin increases the cytokine levels and may contribute to the up-regulation of cellular and humoral immunity.


Asunto(s)
Cordyceps/química , Citocinas/metabolismo , Desoxiadenosinas/aislamiento & purificación , Desoxiadenosinas/metabolismo , Factores Inmunológicos/aislamiento & purificación , Factores Inmunológicos/metabolismo , Leucocitos Mononucleares/inmunología , Animales , Leucocitos Mononucleares/efectos de los fármacos , Lipopolisacáridos/inmunología , Ratones , Bazo/inmunología , Células TH1/inmunología , Células Th2/inmunología
6.
J Microbiol ; 49(6): 1018-21, 2011 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-22203567

RESUMEN

A fibrinolytic enzyme was found in a Gram-negative bacterium, Aeromonas sp. JH1. SDS-PAGE and fibrinzymography showed that it was a 36 kDa, monomeric protein. Of note, the enzyme was highly specific for fibrinogen molecules and the hydrolysis rate of fibrinogen subunits was highest for α, ß, and γ chains in that order. The first 15 amino acids of N-terminal sequence were X-D-A-T-G-P-G-G-N-V-X-T-G-K-Y, which was distinguishable from other fibrinolytic enzymes. The optimum pH and temperature of the enzyme were approximately 8.0 and 40°C, respectively. Therefore, these results provide a fibrinolytic enzyme with potent thrombolytic activity from the Aeromonas genus.


Asunto(s)
Aeromonas/enzimología , Proteínas Bacterianas/metabolismo , Fibrinógeno/metabolismo , Fibrinolíticos/metabolismo , Aeromonas/química , Aeromonas/genética , Aeromonas/aislamiento & purificación , Secuencia de Aminoácidos , Animales , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Estabilidad de Enzimas , Fibrinolíticos/química , Datos de Secuencia Molecular , Oligoquetos/microbiología , Temperatura
7.
J Microbiol ; 49(3): 376-80, 2011 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-21717321

RESUMEN

A fibrinolytic enzyme from Bacillus subtilis strain Al was purified by chromatographic methods, including DEAE Sephadex A-50 column chromatography and Sephadex G-50 column gel filtration. The purified enzyme consisted of a monomeric subunit and was estimated to be approximately 28 kDa in size by SDS-PAGE. The specific activity of the fibrinolytic enzyme was 1632-fold higher than that of the crude enzyme extract. The fibrinolytic activity of the purified enzyme was approximately 0.62 and 1.33 U/ml in plasminogen-free and plasminogen-rich fibrin plates, respectively. Protease inhibitors PMSF, DIFP, chymostatin, and TPCK reduced the fibrinolytic activity of the enzyme to 13.7, 35.7, 15.7, and 23.3%, respectively. This result suggests that the enzyme purified from B. subtilis strain Al was a chymotrypsin-like serine protease. In addition, the optimum temperature and pH range of the fibrinolytic enzyme were 50°C and 6.0-10.0, respectively. The N-terminal amino acid sequence of the purified enzyme was identified as Q-T-G-G-S-I-I-D-P-I-N-G-Y-N, which was highly distinguished from other known fibrinolytic enzymes. Thus, these results suggest a fibrinolytic enzyme as a novel thrombolytic agent from B. subtilis strain Al.


Asunto(s)
Bacillus subtilis/enzimología , Fibrina/metabolismo , Fibrinolíticos/metabolismo , Serina Proteasas , Secuencia de Aminoácidos , Proteínas Bacterianas/química , Proteínas Bacterianas/aislamiento & purificación , Proteínas Bacterianas/metabolismo , Quimotripsina/química , Quimotripsina/aislamiento & purificación , Quimotripsina/metabolismo , Fibrinolíticos/química , Fibrinolíticos/aislamiento & purificación , Concentración de Iones de Hidrógeno , Serina Proteasas/química , Serina Proteasas/aislamiento & purificación , Serina Proteasas/metabolismo , Temperatura
8.
J Microbiol Biotechnol ; 21(12): 1287-93, 2011 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-22210615

RESUMEN

The extracellular polysaccharide (EPS) was isolated from mycelial cultures of Laetiporus sulphureus var. miniatus and purified by DEAE cellulose and Sephadex G-50 column chromatography. The purified EPS (EPS-2-1) was composed of only glucose units and its molecular mass was 6.95 kDa. The chemical structure of EPS-2-1 consisted of a main chain containing (1-->4)-Glcp units with branches at the C-6 position of the chain carrying -Glcp-(1-->4)-linked residues. The effect of purified EPS on immunomodulatory genes and proteins of the Bcl-2 family was observed using cultured U937 human leukemia cells. Of note, the levels of Bax and Bad proteins treated with the EPS (4 mg/ml) were approximately 23- and 18-times higher than those in non-treated cells, respectively. These results may suggest that the EPS purified from the mushroom L. sulphureus is associated with the activation of immunomodulatory mediators, Bax and Bad proteins.


Asunto(s)
Coriolaceae/metabolismo , Micelio/metabolismo , Polisacáridos/química , Polisacáridos/aislamiento & purificación , Secuencia de Carbohidratos , Línea Celular Tumoral , Coriolaceae/química , Expresión Génica/efectos de los fármacos , Humanos , Datos de Secuencia Molecular , Estructura Molecular , Micelio/química , Polisacáridos/metabolismo , Polisacáridos/farmacología , Proteína X Asociada a bcl-2/genética , Proteína Letal Asociada a bcl/genética
9.
J Microbiol ; 48(6): 836-41, 2010 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-21221943

RESUMEN

A fibrinolytic enzyme of the mushroom, Schizophyllum commune was purified with chromatographic methods, including a DEAE-Sephadex A-50 ion-exchange column and gel filtrations with Sephadex G-75 and Sephadex G-50 columns. The analysis of fibrin-zymography and SDS-PAGE showed that the enzyme was a monomeric subunit that was estimated to be approximately 17 kDa in size. The fibrinolytic activity of the enzyme in plasminogen-rich and plasminogen-free fibrin plates was 1.25 and 0.44 U/ml, respectively. The N-terminal amino acid sequence of the purified enzyme was identified as HYNIXNSWSSFID, which was highly distinguished from known fibrinolytic enzymes. The relative activity of the purified enzyme with an addition of 5 mM EDTA, Phosphoramidon, and Bestatin was about 76, 64, and 52%, respectively, indicating that it is a metalloprotease. The optimum temperature for the purified enzyme was approximately 45°C, and over 87% of the enzymatic activity was maintained as a stable state in a pH range from 4.0 to 6.0. Therefore, our results suggest that the potential thrombolytic agent from S. commune is a unique type of fibrinolytic enzyme.


Asunto(s)
Fibrinolisina/aislamiento & purificación , Fibrinolisina/metabolismo , Proteínas Fúngicas/aislamiento & purificación , Proteínas Fúngicas/metabolismo , Schizophyllum/enzimología , Cromatografía Liquida , Electroforesis en Gel de Poliacrilamida , Inhibidores Enzimáticos/metabolismo , Estabilidad de Enzimas , Fibrinolisina/química , Proteínas Fúngicas/química , Concentración de Iones de Hidrógeno , Peso Molecular , Análisis de Secuencia de Proteína , Temperatura
10.
J Microbiol ; 48(6): 881-4, 2010 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-21221951

RESUMEN

We conducted a time course experiment on mycelial cultures of Laetiporus sulphureus var. miniatus. The strain showed significant survival in an initial pH range of 2.0 to 7.0 for 24 days, during which time oxalic acid was accumulated. A structural analysis of purified exopolysaccharide suggested that it contained 96.1% glucose, and the mode of linkage was mainly → 4-Glcp-(1 → units, with branches at the C-6 position consisting of a Glcp-(1 → 4) linked side chain. An exopolysaccharide purified from the acidophilic strain was added to cultured U937 cells, resulting in significantly increased transcription levels of p53 and p21 genes.


Asunto(s)
Coriolaceae/crecimiento & desarrollo , Coriolaceae/metabolismo , Medios de Cultivo/química , Micelio/crecimiento & desarrollo , Polisacáridos/metabolismo , Línea Celular , Inhibidor p21 de las Quinasas Dependientes de la Ciclina/biosíntesis , Expresión Génica , Glucosa/análisis , Humanos , Concentración de Iones de Hidrógeno , Viabilidad Microbiana , Monocitos/efectos de los fármacos , Polisacáridos/química , Factores de Tiempo , Proteína p53 Supresora de Tumor/biosíntesis
11.
Helicobacter ; 11(6): 533-43, 2006 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-17083375

RESUMEN

BACKGROUND: Several Helicobacter pylori proteins have been reported to be associated with severe symptoms of gastric disease. However, expression levels of most of these disease-associated proteins require further evaluation in order to clarify their relationships with gastric disease patterns. Representative proteome components of 71 clinical isolates of H. pylori were analyzed quantitatively to determine whether the protein expression levels were associated with gastric diseases and to cluster clinical isolates. METHODS: After two-dimensional electrophoresis (2-DE) of H. pylori isolates, spot intensities were analyzed using pdquest 2-D Gel Analysis Software. The intensities of 10 representative protein spots, identified by peptide fingerprinting using matrix assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF-MS) or peptide sequencing using quadrupole TOF MS, were subjected to the nonparametric Mann-Whitney test and hierarchical agglomerative cluster analysis. The relationship between clusters and gastric diseases was analyzed by the chi-squared test. RESULTS: Although the spot intensities of the 10 representative proteins were highly variable within each gastric disease group, the expression levels of CagA, UreB, GroEL, EF-Tu, EF-P, TagD, and FldA showed some significant differences among the gastric disease patterns. On the basis of the 10 target protein intensities, hierarchical agglomerative cluster analysis generated a dendrogram with clusters indicative of chronic gastritis/gastric cancers and gastric/duodenal ulcers. CONCLUSION: These results indicated that quantitative analysis of proteome components is a feasible method for examining disease-associated proteins and clustering clinical strains of H. pylori.


Asunto(s)
Proteínas Bacterianas/metabolismo , Infecciones por Helicobacter/microbiología , Helicobacter pylori/metabolismo , Adulto , Antígenos Bacterianos/análisis , Antígenos Bacterianos/metabolismo , Proteínas Bacterianas/análisis , Biopsia , Enfermedad Crónica , Úlcera Duodenal/complicaciones , Úlcera Duodenal/microbiología , Úlcera Duodenal/patología , Electroforesis en Gel Bidimensional , Femenino , Flavoproteínas/análisis , Flavoproteínas/metabolismo , Gastritis/complicaciones , Gastritis/microbiología , Gastritis/patología , Proteínas de Choque Térmico/análisis , Proteínas de Choque Térmico/metabolismo , Infecciones por Helicobacter/complicaciones , Infecciones por Helicobacter/patología , Humanos , Masculino , Persona de Mediana Edad , Factor Tu de Elongación Peptídica/análisis , Factor Tu de Elongación Peptídica/metabolismo , Factores de Elongación de Péptidos/análisis , Factores de Elongación de Péptidos/metabolismo , Peroxidasas/análisis , Peroxidasas/metabolismo , Programas Informáticos , Estómago/patología , Neoplasias Gástricas/complicaciones , Neoplasias Gástricas/microbiología , Neoplasias Gástricas/patología , Úlcera Gástrica/complicaciones , Úlcera Gástrica/microbiología , Úlcera Gástrica/patología
13.
Biotechnol Lett ; 26(5): 393-7, 2004 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-15104136

RESUMEN

A fibrinolytic enzyme, myulchikinase, from a Korean seasoning ingredient, myul-chi-jeot-gal, has been purified to electrophoretic homogeneity. The molecular mass of the myulchikinase was estimated to about 28 kDa by SDS-PAGE and gel filtration. Amino acid sequence of the NH2-terminal of myulchikinase showed significant homology with other fibrinolytic enzymes including trypsin from starfish, katsuwokinase, and rat pancreatic elastase II. The purified myulchikinase hydrolyzed various synthetic substrates with different substrate specificity and cytotoxic to the tumor cell lines.


Asunto(s)
Supervivencia Celular/efectos de los fármacos , Endopeptidasas/aislamiento & purificación , Endopeptidasas/farmacología , Peces/metabolismo , Neoplasias/patología , Secuencia de Aminoácidos , Animales , Antineoplásicos/química , Antineoplásicos/aislamiento & purificación , Antineoplásicos/farmacología , Mama/efectos de los fármacos , Mama/patología , Línea Celular Tumoral/efectos de los fármacos , Relación Dosis-Respuesta a Droga , Endopeptidasas/química , Activación Enzimática , Células Epiteliales/efectos de los fármacos , Células Epiteliales/patología , Fibrinolíticos/química , Fibrinolíticos/aislamiento & purificación , Fibrinolíticos/farmacología , Fijadores/química , Humanos , Células K562 , Linfoma/patología , Ratones , Datos de Secuencia Molecular , Peso Molecular , Homología de Secuencia de Aminoácido
14.
J Bacteriol ; 186(4): 949-55, 2004 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-14761989

RESUMEN

Helicobacter pylori causes gastroduodenal disease, which is mediated in part by its outer membrane proteins (OMPs). To identify OMPs of H. pylori strain 26695, we performed a proteomic analysis. A sarcosine-insoluble outer membrane fraction was resolved by two-dimensional electrophoresis with immobilized pH gradient strips. Most of the protein spots, with molecular masses of 10 to 100 kDa, were visible on the gel in the alkaline pI regions (6.0 to 10.0). The proteome of the OMPs was analyzed by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry. Of the 80 protein spots processed, 62 spots were identified; they represented 35 genes, including 16 kinds of OMP. Moreover, we identified 9 immunoreactive proteins by immunoblot analysis. This study contributes to the characterization of the H. pylori strain 26695 proteome and may help to further elucidate the biological function of H. pylori OMPs and the pathogenesis of H. pylori infection.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/análisis , Helicobacter pylori/química , Proteómica , Sarcosina/farmacología , Proteínas de la Membrana Bacteriana Externa/fisiología , Electroforesis en Gel Bidimensional , Concentración de Iones de Hidrógeno
15.
Plasmid ; 50(3): 236-41, 2003 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-14597012

RESUMEN

We have analyzed a Helicobacter pylori plasmid, pHP489. The 1222-bp nucleotide sequence had one open reading frame, a DnaA-binding site, one direct repeat, and three inverted repeats. The (G+C) content of pHP489 was 33.3%. Although the nucleic acid sequence and deduced amino acid sequence were homologous to those of other bacterial plasmid Rep proteins, the degree of similarity was very low. A deletion analysis showed that the Rep protein was not required for the replication of pHP489 in its H. pylori host, but the host replication machinery was needed.


Asunto(s)
Proteínas Bacterianas/genética , Helicobacter pylori/genética , Plásmidos/genética , Secuencia de Aminoácidos , Proteínas Bacterianas/metabolismo , Composición de Base , Secuencia de Bases , Sitios de Unión , Replicación del ADN/genética , Proteínas de Unión al ADN/metabolismo , Datos de Secuencia Molecular , Homología de Secuencia de Aminoácido
16.
Plasmid ; 50(2): 145-51, 2003 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-12932740

RESUMEN

The nucleotide sequence of a 3955-bp Helicobacter pylori plasmid, pHP51 was determined, and two open reading frames, ORF1 and ORF2, were identified. The deduced amino acid sequence of ORF1 was highly conserved (87-89%) among plasmid replication initiation proteins, RepBs. The function of ORF2 was not assigned because it lacked known functional domains or sequence similarity with other known proteins, although it had a HPFXXGNG motif that was also found in the cAMP-induced filamentation (fic) gene. Three kinds of repeats were present on the plasmid outside of the ORFs, including the R1 and R2 repeats that are common in H. pylori plasmids. One 100-bp sequence detected in the noncoding region of pHP51 was highly similar to the genomic sequence of H. pylori 26695.


Asunto(s)
Proteínas de Unión al ADN , Helicobacter pylori/genética , Plásmidos/genética , Secuencia de Aminoácidos , Secuencia de Bases , Mapeo Cromosómico , ADN Helicasas/genética , Corea (Geográfico) , Datos de Secuencia Molecular , Secuencias Repetitivas de Ácidos Nucleicos/genética , Alineación de Secuencia , Análisis de Secuencia de ADN , Transactivadores/genética
17.
Electrophoresis ; 23(7-8): 1161-73, 2002 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-11981866

RESUMEN

The whole genome sequences of Helicobacter pylori strain 26695 have been reported. Whole cell proteins of H. pylori strain 26695 cells were obtained and analyzed by two-dimensional electrophoresis, using immobilized pH gradient strips. The most abundant proteins were shown in the region of pI 4.0-9.5 with molecular masses from 10 to 100 kDa. Soluble proteins were precipitated by the use of 0-80% saturated solutions of ammonium sulfate. Soluble proteins precipitated by the 0-40% saturations of ammonium sulfate produced similar spot profiles and their abundant protein spots had acidic pI regions. However, a number of soluble proteins precipitated by more than 60% saturation of ammonium sulfate were placed in the alkaline pI regions, compared to those precipitated by 40% saturation. In addition, we have performed an extensive proteome analysis of the strain utilizing peptide MALDI-TOF-MS. Among the 345 protein spots processed, 175 proteins were identified. The identified spots represented 137 genes. One-hundred and fifteen proteins were newly identified in this study, including DNA polymerase III beta-subunit. These results might provide guidance for the enrichment of H. pylori proteins and contribute to construct a master protein map of H. pylori.


Asunto(s)
Proteínas Bacterianas/análisis , Helicobacter pylori/química , Proteoma , Electroforesis en Gel Bidimensional , Peso Molecular , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
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