Diversity of mitochondrial D-loop haplotypes from ancient Thracian horses in Bulgaria.

The domestication of the horse began possibly more than 5000 years ago in the western part of the Eurasian steppe, and according to the leading hypothesis, horses first spread from the Steppe toward the region of the Thracian culture, starting in the second half of the 2nd millennium BCE and flourished from the fifth to first centuries BCE, mainly located in present-day Bulgaria. We analyzed 17 horse bone remains excavated from Thracian archaeological sites (fourth to first centuries BCE) in Bulgaria and successfully identified 17 sequences representing 14 different haplotypes of the mitochondrial D-loop. Compared with the mtDNA haplotypes of modern horses around the world, ancient Thracian horses in Bulgaria are thought to be more closely related to modern horses of Southern Europe and less related to those of Central Asia. In addition, the haplotypes we obtained represented 11 previously reported modern horse mtDNA haplogroups: A, B, D, E, G, H, I, L, N, P, and Q. All the haplogroups contain modern and regionally predominant haplotypes occurring in Europe, the Middle East, and Central Asia. Our results indicate that Thracian horses in Bulgaria have had relatively high genetic diversity and are closely related to modern horse breeds.

Population genetic structure and diversity of the East Balkan Swine (Sus scrofa) in Bulgaria, revealed by mitochondrial DNA and microsatellite analyses.

The East Balkan Swine (EBS) is the only indigenous pig breed in Bulgaria. We analyzed the mitochondrial DNA (mtDNA) control region and 21 microsatellite loci for 198 individuals from 11 farms in Bulgaria. Obtained 11 mtDNA haplotypes including three novel ones were grouped to two major clades, European clade E1 (146/198 individuals, 73.7%) and Asian clade A (52/198, 26.3%). The mixture of the two clades may have resulted from historical crossbreeding between the European and Asian pig breeds. Clade A was frequent in southeastern Bulgaria (Burgas Province), but less frequent or absent in northeastern Bulgaria (Varna and Shumen Provinces). The distribution of Europe- and Asia-specific haplotypes relative to EBS farm locations could be attributed to regional differences of breeding systems (e.g., crossbreeding with imported commercial pigs). A microsatellite analysis showed high heterozygosities for all the EBS farms, and negative inbreeding coefficients presumably due to crossing with commercial pigs or wild boars and/or efforts to reduce inbreeding by farmers. Bayesian clustering analyses showed that all farm populations are genetically well distinguishable from one another. Although diversity has been maintained by the efforts of farmers and a breeding association, the effective population size remains small, and conservation efforts should be continued.

Spatio-temporal partitioning facilitates mesocarnivore sympatry in the Stara Planina Mountains, Bulgaria.

The top trophic level in many terrestrial food webs is typically occupied by mammalian carnivores (Order Carnivora) that broadly affect and shape ecosystems through trophic cascades. Their inter-specific interactions can further complicate effects on community dynamics as a consequence of intra-guild competition. The capacity for competitive mammalian carnivores to segregate their hunting and activity regimes is in major part a function of their similarity, in terms of body-size and dietary niche; termed the 'niche variation hypothesis'. In this study, we used camera-trapping to investigate intra-guild interactions and spatio-temporal partitioning among five mesocarnivores, the golden jackal (Canis aureus), European badger (Meles meles), red fox (Vulpes vulpes), European wildcat (Felis sylvestris) and stone marten (Martes foina), in the Stara Planina Mountains, Bulgaria. We collected a total of 444 images of golden jackals, 236 images of European badgers, 200 images of red foxes, 171 images of stone martens, and 145 images of European wildcats, from 6612 camera-days across fifteen camera-trapping stations. With respect to body size, the three smaller species (fox, wildcat and marten) were active in different time periods than the two larger competitors (jackal and badger) through both the warm and cold season. The more similar the trophic niche between species pairs (particularly relating to rodent consumption), the greater the spatio-temporal partitioning we observed within the pair; however, this adapted to seasonal dietary shifts. In conclusion, spatial and temporal (fine-scale and seasonal) niche partitioning appeared to reduce encounter probabilities and competition and may act to facilitate sympatric coexistence among this regional mesocarnivore guild.