Removing Noise from Extracellular Neural Recordings Using Fully Convolutional Denoising Autoencoders.

Extracellular recordings are severely contaminated by a considerable amount of noise sources, rendering the denoising process an extremely challenging task that should be tackled for efficient spike sorting. To this end, we propose an end-to-end deep learning approach to the problem, utilizing a Fully Convolutional Denoising Autoencoder, which learns to produce a clean neuronal activity signal from a noisy multichannel input. The experimental results on simulated data show that our proposed method can improve significantly the quality of noise-corrupted neural signals, outperforming widely-used wavelet denoising techniques.

Detection of Mental Task Related Activity in NIRS-BCI systems Using Dirichlet Energy over Graphs.

Near Infrared Spectroscopy (NIRS)-based Brain Computer Interfaces (NIRS-BCI) rely mainly on the mean concentration changes and slope of the hemodynamic responses in separate recording channels to detect the mental-task related brain activity. Nevertheless, spatial patterns across the measurement channels are also present and should be taken into account for reliable evaluation of the aforementioned detection. In this work the Dirichlet Energy of NIRS signals over a graph is considered for the definition of a measure that would take into account the spatial NIRS features and would integrate the activity of multiple NIRS channels for robust mental task related activity detection. The application of the proposed measure on a real NIRS dataset demonstrates the efficiency of the proposed measure.

Sparse Kernel Machines for motor imagery EEG classification.

Brain-computer interfaces (BCIs) make humancomputer interaction more natural, especially for people with neuro-muscular disabilities. Among various data acquisition modalities the electroencephalograms (EEG) occupy the most prominent place due to their non-invasiveness. In this work, a method based on sparse kernel machines is proposed for the classification of motor imagery (MI) EEG data. More specifically, a new sparse prior is proposed for the selection of the most important information and the estimation of model parameters is performed using the bayesian framework. The experimental results obtained on a benchmarking EEG dataset for MI, have shown that the proposed method compares favorably with state of the art approaches in BCI literature.

Single-Trial NIRS Data Classification for Brain-Computer Interfaces Using Graph Signal Processing.

Near-infrared spectroscopy (NIRS)-based brain-computer interface (BCI) systems use feature extraction methods relying mainly on the slope characteristics and mean changes of the hemodynamic responses in respect to certain mental tasks. Nevertheless, spatial patterns across the measurement channels have been detected and should be considered during the feature vector extraction stage of the BCI realization. In this paper, a graph signal processing (GSP) approach for feature extraction is adopted in order to capture the aforementioned spatial information of the NIRS signals. The proposed GSP-based methodology for feature extraction in NIRS-based BCI systems, namely graph NIRS (GNIRS), is applied on a publicly available dataset of NIRS recordings during a mental arithmetic task. GNIRS exhibits higher classification rates (CRs), up to 92.52%, as compared to the CRs of two state-of-the-art feature extraction methodologies related to slope and mean values of hemodynamic response, i.e., 90.35% and 82.60%, respectively. In addition, GNIRS leads to the formation of feature vectors with reduced dimensionality in comparison with the baseline approaches. Moreover, it is shown to facilitate high CRs even from the first second after the onset of the mental task, paving the way for faster NIRS-based BCI systems.

EEG-Based Brain-Computer Interfaces for Communication and Rehabilitation of People with Motor Impairment: A Novel Approach of the 21 st Century.

People with severe neurological impairments face many challenges in sensorimotor functions and communication with the environment; therefore they have increased demand for advanced, adaptive and personalized rehabilitation. During the last several decades, numerous studies have developed brain-computer interfaces (BCIs) with the goals ranging from providing means of communication to functional rehabilitation. Here we review the research on non-invasive, electroencephalography (EEG)-based BCI systems for communication and rehabilitation. We focus on the approaches intended to help severely paralyzed and locked-in patients regain communication using three different BCI modalities: slow cortical potentials, sensorimotor rhythms and P300 potentials, as operational mechanisms. We also review BCI systems for restoration of motor function in patients with spinal cord injury and chronic stroke. We discuss the advantages and limitations of these approaches and the challenges that need to be addressed in the future.

A multimodal dataset for authoring and editing multimedia content: The MAMEM project.

We present a dataset that combines multimodal biosignals and eye tracking information gathered under a human-computer interaction framework. The dataset was developed in the vein of the MAMEM project that aims to endow people with motor disabilities with the ability to edit and author multimedia content through mental commands and gaze activity. The dataset includes EEG, eye-tracking, and physiological (GSR and Heart rate) signals collected from 34 individuals (18 able-bodied and 16 motor-impaired). Data were collected during the interaction with specifically designed interface for web browsing and multimedia content manipulation and during imaginary movement tasks. The presented dataset will contribute towards the development and evaluation of modern human-computer interaction systems that would foster the integration of people with severe motor impairments back into society.

In Vivo Imaging of Dentate Gyrus Mossy Cells in Behaving Mice.

Mossy cells in the hilus of the dentate gyrus constitute a major excitatory principal cell type in the mammalian hippocampus; however, it remains unknown how these cells behave in vivo. Here, we have used two-photon Ca2+ imaging to monitor the activity of mossy cells in awake, behaving mice. We find that mossy cells are significantly more active than dentate granule cells in vivo, exhibit spatial tuning during head-fixed spatial navigation, and undergo robust remapping of their spatial representations in response to contextual manipulation. Our results provide a functional characterization of mossy cells in the behaving animal and demonstrate their active participation in spatial coding and contextual representation.

A Novel and Simple Spike Sorting Implementation.

Monitoring the activity of multiple, individual neurons that fire spikes in the vicinity of an electrode, namely perform a Spike Sorting (SS) procedure, comprises one of the most important tools for contemporary neuroscience in order to reverse-engineer the brain. As recording electrodes' technology rabidly evolves by integrating thousands of electrodes in a confined spatial setting, the algorithms that are used to monitor individual neurons from recorded signals have to become even more reliable and computationally efficient. In this work, we propose a novel framework of the SS approach in which a single-step processing of the raw (unfiltered) extracellular signal is sufficient for both the detection and sorting of the activity of individual neurons. Despite its simplicity, the proposed approach exhibits comparable performance with state-of-the-art approaches, especially for spike detection in noisy signals, and paves the way for a new family of SS algorithms with the potential for multi-recording, fast, on-chip implementations.

Dendrites of dentate gyrus granule cells contribute to pattern separation by controlling sparsity.

The hippocampus plays a key role in pattern separation, the process of transforming similar incoming information to highly dissimilar, nonverlapping representations. Sparse firing granule cells (GCs) in the dentate gyrus (DG) have been proposed to undertake this computation, but little is known about which of their properties influence pattern separation. Dendritic atrophy has been reported in diseases associated with pattern separation deficits, suggesting a possible role for dendrites in this phenomenon. To investigate whether and how the dendrites of GCs contribute to pattern separation, we build a simplified, biologically relevant, computational model of the DG. Our model suggests that the presence of GC dendrites is associated with high pattern separation efficiency while their atrophy leads to increased excitability and performance impairments. These impairments can be rescued by restoring GC sparsity to control levels through various manipulations. We predict that dendrites contribute to pattern separation as a mechanism for controlling sparsity. © 2016 The Authors Hippocampus Published by Wiley Periodicals, Inc.

A Simple Method to Simultaneously Detect and Identify Spikes from Raw Extracellular Recordings.

The ability to track when and which neurons fire in the vicinity of an electrode, in an efficient and reliable manner can revolutionize the neuroscience field. The current bottleneck lies in spike sorting algorithms; existing methods for detecting and discriminating the activity of multiple neurons rely on inefficient, multi-step processing of extracellular recordings. In this work, we show that a single-step processing of raw (unfiltered) extracellular signals is sufficient for both the detection and identification of active neurons, thus greatly simplifying and optimizing the spike sorting approach. The efficiency and reliability of our method is demonstrated in both real and simulated data.

Dentate Gyrus circuitry features improve performance of sparse approximation algorithms.

Memory-related activity in the Dentate Gyrus (DG) is characterized by sparsity. Memory representations are seen as activated neuronal populations of granule cells, the main encoding cells in DG, which are estimated to engage 2-4% of the total population. This sparsity is assumed to enhance the ability of DG to perform pattern separation, one of the most valuable contributions of DG during memory formation. In this work, we investigate how features of the DG such as its excitatory and inhibitory connectivity diagram can be used to develop theoretical algorithms performing Sparse Approximation, a widely used strategy in the Signal Processing field. Sparse approximation stands for the algorithmic identification of few components from a dictionary that approximate a certain signal. The ability of DG to achieve pattern separation by sparsifing its representations is exploited here to improve the performance of the state of the art sparse approximation algorithm "Iterative Soft Thresholding" (IST) by adding new algorithmic features inspired by the DG circuitry. Lateral inhibition of granule cells, either direct or indirect, via mossy cells, is shown to enhance the performance of the IST. Apart from revealing the potential of DG-inspired theoretical algorithms, this work presents new insights regarding the function of particular cell types in the pattern separation task of the DG.

A compressed sensing perspective of hippocampal function.

Hippocampus is one of the most important information processing units in the brain. Input from the cortex passes through convergent axon pathways to the downstream hippocampal subregions and, after being appropriately processed, is fanned out back to the cortex. Here, we review evidence of the hypothesis that information flow and processing in the hippocampus complies with the principles of Compressed Sensing (CS). The CS theory comprises a mathematical framework that describes how and under which conditions, restricted sampling of information (data set) can lead to condensed, yet concise, forms of the initial, subsampled information entity (i.e., of the original data set). In this work, hippocampus related regions and their respective circuitry are presented as a CS-based system whose different components collaborate to realize efficient memory encoding and decoding processes. This proposition introduces a unifying mathematical framework for hippocampal function and opens new avenues for exploring coding and decoding strategies in the brain.

A novel emotion elicitation index using frontal brain asymmetry for enhanced EEG-based emotion recognition.

This paper aims at providing a novel method for evaluating the emotion elicitation procedures in an electroencephalogram (EEG)-based emotion recognition setup. By employing the frontal brain asymmetry theory, an index, namely asymmetry Index (AsI), is introduced, in order to evaluate this asymmetry. This is accomplished by a multidimensional directed information analysis between different EEG sites from the two opposite brain hemispheres. The proposed approach was applied to three-channel (Fp1, Fp2, and F3/F4 10/20 sites) EEG recordings drawn from 16 healthy right-handed subjects. For the evaluation of the efficiency of the AsI, an extensive classification process was conducted using two feature-vector extraction techniques and a SVM classifier for six different classification scenarios in the valence/arousal space. This resulted in classification results up to 62.58% for the user independent case and 94.40% for the user-dependent one, confirming the efficacy of AsI as an index for the emotion elicitation evaluation.

Adaptive extraction of emotion-related EEG segments using multidimensional directed information in time-frequency domain.

Emotion discrimination from electroencephalogram (EEG) has gained attention the last decade as a user-friendly and effective approach to EEG-based emotion recognition (EEG-ER) systems. Nevertheless, challenging issues regarding the emotion elicitation procedure, especially its effectiveness, raise. In this work, a novel method, which not only evaluates the degree of emotion elicitation but localizes the emotion information in the time-frequency domain, as well, is proposed. The latter, incorporates multidimensional directed information at the time-frequency EEG representation, extracted using empirical mode decomposition, and introduces an asymmetry index for adaptive emotion-related EEG segment selection. Experimental results derived from 16 subjects visually stimulated with pictures from the valence/arousal space drawn from the International Affective Picture System database, justify the effectiveness of the proposed approach and its potential contribution to the enhancement of EEG-ER systems.

Emotion recognition from EEG using higher order crossings.

Electroencephalogram (EEG)-based emotion recognition is a relatively new field in the affective computing area with challenging issues regarding the induction of the emotional states and the extraction of the features in order to achieve optimum classification performance. In this paper, a novel emotion evocation and EEG-based feature extraction technique is presented. In particular, the mirror neuron system concept was adapted to efficiently foster emotion induction by the process of imitation. In addition, higher order crossings (HOC) analysis was employed for the feature extraction scheme and a robust classification method, namely HOC-emotion classifier (HOC-EC), was implemented testing four different classifiers [quadratic discriminant analysis (QDA), k-nearest neighbor, Mahalanobis distance, and support vector machines (SVMs)], in order to accomplish efficient emotion recognition. Through a series of facial expression image projection, EEG data have been collected by 16 healthy subjects using only 3 EEG channels, namely Fp1, Fp2, and a bipolar channel of F3 and F4 positions according to 10-20 system. Two scenarios were examined using EEG data from a single-channel and from combined-channels, respectively. Compared with other feature extraction methods, HOC-EC appears to outperform them, achieving a 62.3% (using QDA) and 83.33% (using SVM) classification accuracy for the single-channel and combined-channel cases, respectively, differentiating among the six basic emotions, i.e., happiness, surprise, anger, fear, disgust, and sadness. As the emotion class-set reduces its dimension, the HOC-EC converges toward maximum classification rate (100% for five or less emotions), justifying the efficiency of the proposed approach. This could facilitate the integration of HOC-EC in human machine interfaces, such as pervasive healthcare systems, enhancing their affective character and providing information about the user's emotional status (e.g., identifying user's emotion experiences, recurring affective states, time-dependent emotional trends).