Comprehensive view of microscopic interactions between DNA-coated colloids.

The self-assembly of DNA-coated colloids into highly-ordered structures offers great promise for advanced optical materials. However, control of disorder, defects, melting, and crystal growth is hindered by the lack of a microscopic understanding of DNA-mediated colloidal interactions. Here we use total internal reflection microscopy to measure in situ the interaction potential between DNA-coated colloids with nanometer resolution and the macroscopic melting behavior. The range and strength of the interaction are measured and linked to key material design parameters, including DNA sequence, polymer length, grafting density, and complementary fraction. We present a first-principles model that screens and combines existing theories into one coherent framework and quantitatively reproduces our experimental data without fitting parameters over a wide range of DNA ligand designs. Our theory identifies a subtle competition between DNA binding and steric repulsion and accurately predicts adhesion and melting at a molecular level. Combining experimental and theoretical results, our work provides a quantitative and predictive approach for guiding material design with DNA-nanotechnology and can be further extended to a diversity of colloidal and biological systems.

Effect of photon counting shot noise on total internal reflection microscopy.

Total internal reflection microscopy (TIRM) measures changes in the distance between a colloidal particle and a transparent substrate by measuring the scattering intensity of the particle illuminated by an evanescent wave. From the distribution of the recorded separation distances, the height-dependent effective potential φ(z) between the colloidal particle and the substrate can be measured. In this work, we show that spatial resolution with which TIRM can measure φ(z) is limited by the photon counting statistics of the scattered laser light. We develop a model to evaluate the effect of photon counting statistics on different potential profiles using Brownian dynamics simulations and experiments. Our results show that the effect of photon counting statistics depends on spatial gradients ∂φ/∂z of the potential, with the result that sharp features tend to be significantly blurred. We further establish the critical role of photon counting statistics and the intensity integration time τ in TIRM measurements, which is a trade-off between narrowing the width of the photon counting distribution and capturing the instantaneous position of the probe particle.

Patchy Colloidal Clusters with Broken Symmetry.

Colloidal clusters are prepared by assembling positively charged cross-linked polystyrene (PS) particles onto negatively charged liquid cores of swollen polymer particles. PS particles at the interface of the liquid core are closely packed around the core due to interfacial wetting. Then, by evaporating solvent in the liquid cores, polymers in the cores are solidified and the clusters are cemented. As the swelling ratio of PS cores increases, cores at the center of colloidal clusters are exposed, forming patchy colloidal clusters. Finally, by density gradient centrifugation, high-purity symmetric colloidal clusters are obtained. When silica-PS core-shell particles are swollen and serve as the liquid cores, hybrid colloidal clusters are obtained in which each silica nanoparticle is relocated to the liquid core interface during the swelling-deswelling process breaking symmetry in colloidal clusters as the silica nanoparticle in the core is comparable in size with the PS particle in the shell. The configuration of colloidal clusters is determined once the number of particles around the liquid core is given, which depends on the size ratio of the liquid core and shell particle. Since hybrid clusters are heavier than PS particles, they can be purified using centrifugation.

Colloidal Particles with Triangular Patches.

Self-assembling colloidal particles into clathrate hydrates requires the particles to have tetrahedral bonds in the eclipsed conformation. It has been suggested that colloidal particles with eclipsed triangular-shaped patches can form clusters in the eclipsed conformation that leads to colloidal clathrate hydrates. However, in experiments, patches have been limited to circular shapes due to surface energy minimization. Here, we extend the particle synthesis strategy and show that colloidal particles with triangular patches can be readily fabricated by controlling the viscosity of the liquid oil droplets during a colloidal fusion process. The position, orientation, curvature, shape, and size of the patches are all exclusively determined by the intrinsic symmetry of the colloidal clusters, resulting in dipatch particles with eclipsed patches and tetrahedral patchy particles with patch vertices pointing toward each other. Patch curvature can be controlled by tuning the viscosity of the oil droplets and using different surfactants. Using strain-promoted azide-alkyne cycloaddition, single-stranded DNA can be selectively functionalized on the patches. However, after annealing these particles, dipatch particles form chains because the patches are too small to form clathrate hydrates. Under certain conditions, tetrahedral triangular patchy particles should prefer the eclipsed conformation, as it maximizes DNA hybridization. However, we observe random aggregates, which result from having triangular patches that are too big. We estimate that tetrahedral patchy particles that can crystallize need to be less than 1 µm in diameter.

Large-scale synthesis of colloidal bowl-shaped particles.

We describe a general procedure for the large-scale fabrication of bowl-shaped colloidal particles using an emulsion templating technique. Following this method, single polymeric seed particles become located on individual oil droplet surfaces. The polymer phase is subsequently plasticized using an appropriate solvent. In this critical step, the compliant seed is deformed by surface tension, with the droplet serving as a templating surface. Solvent evaporation freezes the desired particle shape and the oil is subsequently removed by alcohol dissolution. The resulting uniformly-shaped colloidal particles were studied using scanning electron and optical microscopy. By adjusting the droplet size and the seed particle diameter, we demonstrate that the final particle shape can be controlled precisely, from shallow lenses to deep bowls. We also show that the colloid's uniformity and abundant quantity allowed the depletion-mediated assembly of flexible colloidal chains and clusters.

Two-Dimensional (2D) or Quasi-2D Superstructures from DNA-Coated Colloidal Particles.

This contribution describes the synthesis of colloidal di-patch particles functionalized with DNA on the patches and their assembly into colloidal superstructures via cooperative depletion and DNA-mediated interactions. The assembly into flower-like Kagome, brick-wall like monolayer, orthogonal packed single or double layers, wrinkled monolayer, and colloidal honeycomb superstructures can be controlled by tuning the particles' patch sizes and assembly conditions. Based on these experimental results, we generate an empirical phase diagram. The principles revealed by the phase diagram provide guidance in the design of two-dimensional (2D) materials with desired superstructures. Our strategy might be translatable to the assembly of three-dimensional (3D) colloidal structures.

Hyperuniform Structures Formed by Shearing Colloidal Suspensions.

In periodically sheared suspensions there is a dynamical phase transition, characterized by a critical strain amplitude γ_{c}, between an absorbing state where particle trajectories are reversible and an active state where trajectories are chaotic and diffusive. Repulsive nonhydrodynamic interactions between "colliding" particles' surfaces have been proposed as a source of this broken time reversal symmetry. A simple toy model called random organization qualitatively reproduces the dynamical features of this transition. Random organization and other absorbing state models exhibit hyperuniformity, a strong suppression of density fluctuations on long length scales quantified by a structure factor S(q→0)∼q^{α} with α>0, at criticality. Here we show experimentally that the particles in periodically sheared suspensions organize into structures with anisotropic short-range order but isotropic, long-range hyperuniform order when oscillatory shear amplitudes approach γ_{c}.

Reconfigurable Transitions between One- and Two-Dimensional Structures with Bifunctional DNA-Coated Janus Colloids.

Coating colloidal particles with DNA provides one of the most versatile and powerful methods for controlling colloidal self-assembly. Previous studies have shown how combining DNA coatings with DNA strand displacement allows one to design phase transitions between different three-dimensional crystal structures. Here we show that by using DNA coatings with bifunctional colloidal Janus particles, we can realize reconfigurable thermally reversible transitions between one- and two-dimensional self-assembled colloidal structures. We introduce a colloidal system in which DNA-coated asymmetric Janus particles can reversibly switch their Janus balance in response to temperature, resulting in the reconfiguration of assembling structures between colloidal chains and bilayers. Each face of the Janus particles is coated with different self-complementary DNA strands. Toehold strand displacement is employed to selectively activate or deactivate the sticky ends on the smaller face, which enables Janus particles to selectively assemble through either the smaller or larger face. This strategy could be useful for constructing complex systems that could be reconfigured to assemble into different structures in different environments.

Colloidal diamond.

Self-assembling colloidal particles in the cubic diamond crystal structure could potentially be used to make materials with a photonic bandgap1-3. Such materials are beneficial because they suppress spontaneous emission of light1 and are valued for their applications as optical waveguides, filters and laser resonators4, for improving light-harvesting technologies5-7 and for other applications4,8. Cubic diamond is preferred for these applications over more easily self-assembled structures, such as face-centred-cubic structures9,10, because diamond has a much wider bandgap and is less sensitive to imperfections11,12. In addition, the bandgap in diamond crystals appears at a refractive index contrast of about 2, which means that a photonic bandgap could be achieved using known materials at optical frequencies; this does not seem to be possible for face-centred-cubic crystals3,13. However, self-assembly of colloidal diamond is challenging. Because particles in a diamond lattice are tetrahedrally coordinated, one approach has been to self-assemble spherical particles with tetrahedral sticky patches14-16. But this approach lacks a mechanism to ensure that the patchy spheres select the staggered orientation of tetrahedral bonds on nearest-neighbour particles, which is required for cubic diamond15,17. Here we show that by using partially compressed tetrahedral clusters with retracted sticky patches, colloidal cubic diamond can be self-assembled using patch-patch adhesion in combination with a steric interlock mechanism that selects the required staggered bond orientation. Photonic bandstructure calculations reveal that the resulting lattices (direct and inverse) have promising optical properties, including a wide and complete photonic bandgap. The colloidal particles in the self-assembled cubic diamond structure are highly constrained and mechanically stable, which makes it possible to dry the suspension and retain the diamond structure. This makes these structures suitable templates for forming high-dielectric-contrast photonic crystals with cubic diamond symmetry.

Tunable assembly of hybrid colloids induced by regioselective depletion.

Assembling colloidal particles using site-selective directional interactions into predetermined colloidal superlattices with desired properties is broadly sought after, but challenging to achieve. Herein, we exploit regioselective depletion interactions to engineer the directional bonding and assembly of non-spherical colloidal hybrid microparticles. We report that the crystallization of a binary colloidal mixture can be regulated by tuning the depletion conditions. Subsequently, we fabricate triblock biphasic colloids with controlled aspect ratios to achieve regioselective bonding. Without any surface treatment, these biphasic colloids assemble into various colloidal superstructures and superlattices featuring optimized pole-to-pole or centre-to-centre interactions. Additionally, we observe polymorphic crystallization, quantify the abundancy of each form using algorithms we developed and investigate the crystallization process in real time. We demonstrate selective control of attractive interactions between specific regions on an anisotropic colloid with no need of site-specific surface functionalization, leading to a general method for achieving colloidal structures with yet unforeseen arrangements and properties.

Photo-printing of faceted DNA patchy particles.

Patchy particles with shape complementarity can serve as building blocks for assembling colloidal superstructures. Alternatively, encoding information on patches using DNA can direct assembly into a variety of crystalline or other preprogrammed structures. Here, we present a tool where DNA is used both to engineer shape and to encode information on colloidal particles. Two reactive oil emulsions with different but complementary DNA (cDNA) brushes are assembled into CsCl-like crystalline lattices. The DNA brushes are recruited to and ultimately localized at the junctions between neighboring droplets, which gives rise to DNA-encoded faceted patches. The emulsions are then solidified by ultraviolet (UV) polymerization, producing faceted patchy particles. The facet size and DNA distribution are determined by the balance between the DNA binding energy and the elastic deformation energy of droplets. This method leads to a variety of new patchy particles with directional interactions in scalable quantities.

Reconfigurable Self-Assembly and Kinetic Control of Multiprogrammed DNA-Coated Particles.

DNA is a unique molecule for storing information, which is used to provide particular biological instructions. Its function is primarily determined by the sequence of its four nucleobases, which have highly specific base-pairing interactions. This unique feature can be applied to direct the self-assembly of colloids by grafting DNA onto them. Due to the sequence-specific interactions, colloids can be programmed with multiple instructions. Here, we show that particles having multiple DNA strands with different melting profiles can undergo multiple phase transitions and reassemble into different crystalline structures in response to temperature. We include free DNA strands in the medium to selectively switch on and off DNA hybridization depending on temperature. We also demonstrate that DNA hybridization kinetics can be used as a means to achieve targeted assembling structure of colloids. These transitions impart a reconfigurability to colloids in which systems can be transformed an arbitrary number of times using thermal and kinetic control.

High-Density DNA Coatings on Carboxylated Colloids by DMTMM- and Azide-Mediated Coupling Reactions.

DNA-mediated colloidal interactions provide a powerful strategy for the self-assembly of ordered superstructures. We report a practical and efficient two-step chemical method to graft DNA brushes onto carboxylated particles, which resolves the previously reported issues such as irreversible aggregation, inhomogeneous coating, and relatively low DNA density that can hinder colloidal crystallization. First, carboxylated particles are functionalized with heterobifunctional poly(ethylene glycol) (NH2-PEGn-N3) by 4-(4,6-dimethoxy-1,3,5-triazin-2-yl)-4-methylmorpholinium chloride (DMTMM)-activated esterification of carboxylic groups and amide coupling. Then, dibenzocyclooctyne (DBCO)-functionalized DNA strands are grafted onto the pegylated particles through strain-promoted alkyne-azide cycloaddition (SPAAC) on azide groups. The homogeneous PEG brushes provide dispersion stability to the particles and clickable functional groups, resulting in DNA coatings of 1 100 000 DNA per 1 µm particle or 1 DNA per 2.9 nm2, about five times higher than previously reported. The DNA-coated particles exhibit a sharp association-dissociation transition and readily self-assemble into colloidal crystals upon annealing. In addition, fluorinated particles and lens-shaped particles with carboxylate groups are successfully grafted with DNA strands in this manner. Janus particles are also functionalized with DNA strands selectively on one of the two faces. Owing to the anisotropic attraction, the DNA-coated Janus particles self-assemble into self-limiting aggregates.

Colloidal fibers and rings by cooperative assembly.

Janus colloids with one attractive patch on an otherwise repulsive particle surface serve as model systems to explore structure formation of particles with chemically heterogeneous surfaces such as proteins. While there are numerous computer studies, there are few experimental realizations due to a lack of means to produce such colloids with a well-controlled variable Janus balance. Here, we report a simple scalable method to precisely vary the Janus balance over a wide range and selectively functionalize one patch with DNA. We observe, via experiment and simulation, the dynamic formation of diverse superstructures: colloidal micelles, chains, or bilayers, depending on the Janus balance. Flexible dimer chains form through cooperative polymerization while trimer chains form by a two-stage process, first by cooperative polymerization into disordered aggregates followed by condensation into more ordered stiff trimer chains. Introducing substrate binding through depletion catalyzes dimer chains to form nonequilibrium rings that otherwise do not form.

Assembly of clathrates from tetrahedral patchy colloids with narrow patches.

Here, we revisit the assembly of colloidal tetrahedral patchy particles. Previous studies have shown that the crystallization of diamond from the fluid phase depends more critically on patch width than on the interaction range: particles with patches narrower than 40° crystallize readily and those with wide patches form disordered glass states. We find that the crystalline structure formed from the fluid also depends on the patch width. Whereas particles with intermediate patches assemble into diamond (random stacking of cubic and hexagonal diamond layers), particles with narrow patches (with width ≈20° or less) crystallize frequently into clathrates. Free energy calculations show that clathrates are never (in the pressure-temperature plane) thermodynamically more stable than diamond. The assembly of clathrate structures is thus attributed to kinetic factors that originate from the thermodynamic stabilization of pentagonal rings with respect to hexagonal ones as patches become more directional. These pentagonal rings present in the fluid phase assemble into sII clathrate or into large clusters containing 100 particles and exhibiting icosahedral symmetry. These clusters then grow by interpenetration. Still, the organization of these clusters into extended ordered structures was never observed in the simulations.

DNA functionalization of colloidal particles via physisorption of azide-functionalized diblock copolymers.

DNA-coated inorganic particles can be prepared simply by physical adsorption of azide-functionalized diblock copolymers (polystyrene-b-poly(ethylene oxide)-azide, PS-b-PEO-N3) onto hydrophobically-modified inorganic particles, followed by strain-promoted azide-alkyne cycloaddition (SPAAC, copper-free click chemistry). This approach is applied to organosilica, silica and titania particles. The DNA-coated colloids are successfully crystallized into colloidal superstructures by a thermal annealing process using DNA-mediated assembly.

Optimizing the Synthesis of Monodisperse Colloidal Spheres Using Holographic Particle Characterization.

Holographic particle characterization measures the sizes and compositions of individual colloidal particles dispersed in fluid media and rapidly amasses statistics on the distributions of these properties, even for complex heterogeneous dispersions. This information is useful for analyzing and optimizing protocols for synthesizing colloidal particles. We illustrate how holographic characterization can guide process design through a case study on a particularly versatile model system composed of an aqueous dispersion of micrometer-scale spheres synthesized from the organosilane monomer 3-(trimethoxysilyl)propyl methacrylate.

Pyrochlore lattice, self-assembly and photonic band gap optimizations.

Non-spherical colloidal building blocks introduce new design principles for self-assembly, making it possible to realize optical structures that could not be assembled previously. With this added complexity, the phase space expands enormously so that computer simulation becomes a valuable tool to design and assemble structures with useful optical properties. We recently demonstrated that tetrahedral clusters and spheres, interacting through a DNA-mediated short-range attractive interaction, self-assemble into a superlattice of interpenetrating diamond and pyrochlore sublattices, but only if the clusters consist of partially overlapping spheres. Here we show how the domain of crystallization can be extended by implementing a longer range potential and consider how the resultant structures affect the photonic band gaps of the underlying pyrochlore sublattice. We show that with the proper design, using clusters of overlapping spheres lead to larger photonic band gaps that open up at lower optical contrast.

Correction: Compressible colloidal clusters from Pickering emulsions and their DNA functionalization.

Correction for 'Compressible colloidal clusters from Pickering emulsions and their DNA functionalization' by In-Seong Jo et al., Chem. Commun., 2018, 54, 8328-8331.

DNA-Functionalized 100 nm Polymer Nanoparticles from Block Copolymer Micelles.

DNA-mediated self-assembly of colloidal particles is one of the most promising approaches for constructing colloidal superstructures. For nanophotonic materials and devices, DNA-functionalized colloids with diameters of around 100 nm are essential building blocks. Here, we demonstrate a strategy for synthesizing DNA-functionalized polymer nanoparticles (DNA-polyNPs) in the size range of 55-150 nm using block copolymer micelles as a template. Diblock copolymers of polystyrene- b-poly(ethylene oxide) with an azide end group (PS- b-PEO-N3) are first formed into spherical micelles. Then, the micelle cores are swollen with the styrene monomer and polymerized, thus producing PS NPs with PEO brushes and azide functional end groups. DNA strands are conjugated onto the ends of the PEO brushes through a strain-promoted alkyne-azide cycloaddition reaction, resulting in a DNA density of more than one DNA strand per 12.6 nm2 for 70 nm particles. The DNA-polyNPs with complementary sequences enable the formation of CsCl-type colloidal superstructure by DNA binding.