Influenza A, like Omicron SARS-CoV-2, Is Similarly Detected in Saliva or Nasopharyngeal Samples via RT-qPCR.

After the Coronavirus pandemic, the importance of virus surveillance was highlighted, reinforcing the constant necessity of discussing and updating the methods for collection and diagnoses, including for other respiratory viruses. Although the nasopharyngeal swab is the gold-standard sample for detecting and genotyping SARS-CoV-2 and Influenza viruses, its collection is uncomfortable and requires specialized teams, which can be costly. During the pandemic, non-invasive saliva samples proved to be a suitable alternative for SARS-CoV-2 diagnosis, but for Influenza virus the use of this sample source is not recognized yet. In addition, most SARS-CoV-2 comparisons were conducted before the Omicron variant emerged. Here, we aimed to compare Influenza A and Omicron RT-qPCR analysis of nasopharyngeal swabs and saliva self-collection in paired samples from 663 individuals. We found that both nasopharyngeal swab and saliva collection are efficient for the diagnosis of Omicron (including sub-lineages) and for Influenza A, with high sensitivity and accuracy (>90%). The kappa index is 0.938 for Influenza A and 0.905 for SARS-CoV-2. These results showed excellent agreement between the two samples reinforcing saliva samples as a reliable source for detecting Omicron and highlighting saliva as a valid sample source for Influenza detection, considering this cheaper and more comfortable alternative.

Antifungal activity of essential oils and their combinations against storage fungi.

We aimed to evaluate the fungicidal activity of essential oils (EOs) from Baccharis dracunculifolia (Asteraceae), Baccharis uncinella (Asteraceae), Mentha arvensis (Lamiaceae), Salvia officinalis (Lamiaceae), Melaleuca alternifolia (Myrtaceae), and Cymbopogon nardus (Poaceae) in the in vitro control of mycotoxin-producing strains of Aspergillus niger, Aspergillus nomius, Aspergillus flavus, and Fusarium graminearum. EOs' chemical composition was analyzed by gas chromatography-mass spectrometry, and a total of 19, 21, 18, 20, 17, and 15 compounds were identified in B. dracunculifolia, B. uncinella, S. officinalis, M. arvensis, M. alternifolia, and C. nardus EOs, respectively. Contact and volatilization bioassays were performed, for which M. alternifolia and C. nardus EOs had the greatest fungicidal effect (> 90%). Therefore, these EOs were evaluated for minimum inhibitory concentration, medium inhibitory concentration, and sporulation. Effects from the combined use of EOs were also evaluated. EOs interacted in combination, displaying an additive effect against F. graminearum and A. flavus and an antagonistic effect against the remaining isolates. We conclude that C. nardus EO was effective in the control of storage pathogens and that combined EOs can improve their antifungal effects.

Streptomyces spp. Isolated from Marine and Caatinga Biomes in Brazil for the Biological Control of Duponchelia fovealis.

Actinobacteria have been drawing attention due to their potential for the development of new pest control products. We hereby assess the effects of Streptomyces isolated from marine and caatinga biomes against Duponchelia fovealis Zeller (Lepidoptera: Crambidae), a pest associated with the strawberry culture at a global scale. To this end, eggs deposited by adults were immersed for 5 s in a bacterial suspension, and the larvae were fed on leaflets placed in glass tubes containing bacterial suspensions. In both treatments, the control was a saline solution. The bioassays demonstrated that the Streptomyces strains were able to cause the death of D. fovealis eggs (≈ 40%) and larvae (≈ 65%) compared to untreated eggs (1.4%) and larvae (2.0%). The crude extract of strain T49 and the chitinase extract of strain T26 affected larval growth when applied directly to the thorax of first-instar larvae (larval-adult lifespan of 65.3 ± 0.5 days and 67.5 ± 0.7 days, respectively; survival of 61.2 ± 1.2%) in relation to the control treatment (larval-adult lifespan of 41.75 ± 0.2 days and survival of 83.7 ± 2.6%). The Streptomyces spp. strains T41, T49, and T50 caused antifeeding activity. Apart from larval mortality, the adults that emerged from the larvae exposed to the extracts presented morphological abnormalities, and the moths' chitin spectra showed clear alterations to the pupa and wings. Our studies show, for the very first time, that Streptomyces isolated from the marine environment and the Caatinga biome are effective at provoking the mortality of D. fovealis and are promising agents for developing new products with biological control properties.