Calculated vibration spectrum of calcium hexahydroxodizincate dihydrate (qatranaite).

On the basis of first-principles electronic structure calculations, crystallographic parameters have been refined for calcium hydroxozincate (Qatranaite mineral), and the vibration properties (frequencies and eigenvectors) calculated. A detailed analysis of vibration modes is done, in the context of comparison with infrared and Raman spectra previously available. Special attention is paid to a posteriori symmetry analysis of vibration modes, discussing the latters' attribution to four irreducible representations of the P21/c space group, and to identifying stretchings and bendings of particular chemical bonds, pronounced in different vibrations. It turns out that high-frequency (>700 cm-1) vibrations of hydroxyl groups bridging the Ca or Zn cations differ quite considerably for crystallographically distinct hydroxyl positions. It is shown that the vibrations involving hydroxyl groups and crystalline water typically come about in quadruplets at very close frequencies, whereby different irreducible representations reflect different combinations of similar "molecular" vibrations of four identical entities (of each hydroxyl or water) present in the unit cell. However, some vibrations show exceptions from this rule. In addition to interpretation of earlier experimental investigations, our study indicates that the low-frequency (<700 cm-1) vibrations within the cation-hydroxyl connected skeleton are of more "solid-state-like" character and cannot be reasonably interpreted in terms of "molecular" vibrations within ZnO4 or CaO6 units.

Potential of nanostructured carbon materials for iodine detection in realistic environments revealed by first-principles calculations.

In the context of effective detection of iodine species (I2, CH3I) formed in nuclear power plants and nuclear fuel reprocessing facilities, we perform a comparative study of the potential sensing performance of four expectedly promising 2D materials (8-Pmmn borophene, BC3, C3N, and BC6N) towards the iodine-containing gases and, with the view of checking selectivity, towards common inhibiting gases in the containment atmosphere (H2O and CO), applying methods of dispersion-corrected density functional theory with periodic boundary conditions. A covalent bond is formed between the CO molecule and boron in BC3 or in 8-Pmmn borophene, compromising the anticipated applicability of these materials for iodine detection. The presence of nitrogen atoms in BC6N-2 prevents the formation of a covalent bond with CO; however, the closeness of adsorption energies for all the four gases studied does not distinguish this material as specifically sensitive to iodine species. Finally, the energies of adsorption on C3N yield a significant and promising discrimination between the adsorption energies of (I2, CH3I) vs. (CO, H2O), revealing possibilities for this material's use as an iodine sensor. The conclusions are supported by simulations at finite temperature; underlying electronic structures are also discussed.

Terahertz-to-infrared converters for imaging the human skin cancer: challenges and feasibility.

Purpose: Terahertz (THz) medical imaging is a promising noninvasive technique for monitoring the skin's conditions, early detection of the human skin cancer, and recovery from burns and wounds. It can be applied for visualization of the healing process directly through clinical dressings and restorative ointments, minimizing the frequency of dressing changes. The THz imaging technique is cost effective, as compared to the magnetic resonance method. Our aim was to develop an approach capable of providing better image resolution than the commercially available THz imaging cameras. Approach: The terahertz-to-infrared (THz-to-IR) converters can visualize the human skin cancer by converting the latter's specific contrast patterns recognizable in THz radiation range into IR patterns, detectable by a standard IR imaging camera. At the core of suggested THz-to-IR converters are flat matrices transparent both in the THz range to be visualized and in the operating range of the IR camera, these matrices contain embedded metal nanoparticles (NPs), which, when irradiated with THz rays, convert the energy of THz photons into heat and become nanosources of IR radiation detectable by an IR camera. Results: The ways of creating the simplest converter, as well as a more complex converter with wider capabilities, are considered. The first converter is a gelatin matrix with gold 8.5-nm diameter NPs, and the second is a polystyrene matrix with 2-nm diameter NPs from copper-nickel MONEL® alloy 404. Conclusions: An approach with a THz-to-IR converter equipped with an IR camera is promising in that it could provide a better image of oncological pathology than the commercially available THz imaging cameras do.

Siesta: Recent developments and applications.

A review of the present status, recent enhancements, and applicability of the Siesta program is presented. Since its debut in the mid-1990s, Siesta's flexibility, efficiency, and free distribution have given advanced materials simulation capabilities to many groups worldwide. The core methodological scheme of Siesta combines finite-support pseudo-atomic orbitals as basis sets, norm-conserving pseudopotentials, and a real-space grid for the representation of charge density and potentials and the computation of their associated matrix elements. Here, we describe the more recent implementations on top of that core scheme, which include full spin-orbit interaction, non-repeated and multiple-contact ballistic electron transport, density functional theory (DFT)+U and hybrid functionals, time-dependent DFT, novel reduced-scaling solvers, density-functional perturbation theory, efficient van der Waals non-local density functionals, and enhanced molecular-dynamics options. In addition, a substantial effort has been made in enhancing interoperability and interfacing with other codes and utilities, such as wannier90 and the second-principles modeling it can be used for, an AiiDA plugin for workflow automatization, interface to Lua for steering Siesta runs, and various post-processing utilities. Siesta has also been engaged in the Electronic Structure Library effort from its inception, which has allowed the sharing of various low-level libraries, as well as data standards and support for them, particularly the PSeudopotential Markup Language definition and library for transferable pseudopotentials, and the interface to the ELectronic Structure Infrastructure library of solvers. Code sharing is made easier by the new open-source licensing model of the program. This review also presents examples of application of the capabilities of the code, as well as a view of on-going and future developments.

Comparative study of structural and electronic properties of GaSe and InSe polytypes.

Equilibrium crystal structures, electron band dispersions, and bandgap values of layered GaSe and InSe semiconductors, each being represented by four polytypes, are studied via first-principles calculations within the density functional theory. A number of practical algorithms to take into account dispersion interactions are tested, from empirical Grimme corrections to many-body dispersion schemes. Due to the utmost technical accuracy achieved in the calculations, nearly degenerate energy-volume curves of different polytypes are resolved, and the conclusions concerning the relative stability of competing polytypes drawn. The predictions are done as for how the equilibrium between different polytypes will be shifted under the effect of hydrostatic pressure. The band structures are inspected under the angle of identifying features specific for different polytypes and with respect to modifications of the band dispersions brought about by the use of modified Becke-Johnson (mBJ) scheme for the exchange-correlation potential. As another way to improve the predictions of bandgaps values, hybrid functional calculations according to the HSE06 scheme are performed for the band structures, and the relation with the mBJ results are discussed. Both methods nicely agree with the experimental results and with state-of-the-art GW calculations. Some discrepancies are identified in cases of close competition between the direct and indirect gap (e.g., in GaSe); moreover, the accurate placement of bands revealing relatively localized states is slightly different according to mBJ and HSE06 schemes.

A terahertz-vibration to terahertz-radiation converter based on gold nanoobjects: a feasibility study.

BACKGROUND: The need for practical and adaptable terahertz sources is apparent in the areas of application such as early cancer diagnostics, nondestructive inspection of pharmaceutical tablets, visualization of concealed objects. We outline the operation principle and suggest the design of a simple appliance for generating terahertz radiation by a system of nanoobjects - gold nanobars (GNBs) or nanorings (GNRs) - irradiated by microwaves. RESULTS: Our estimations confirm a feasibility of the idea that GNBs and GNRs irradiated by microwaves could become terahertz emitters with photon energies within the full width at half maximum of the longitudinal acoustic phononic DOS of gold (ca. 16-19 meV, i.e., 3.9-4.6 THz). A scheme of the terahertz radiation source is suggested based on the domestic microwave oven irradiating a substrate with multiple deposited GNBs or GNRs. CONCLUSION: The size of a nanoobject for optimal conversion is estimated to be approx. 3 nm (thickness) by approx. 100 nm (length of GNB, or along the GNR). This detailed prediction is open to experimental verification. An impact is expected onto further studies of interplay between atomic vibrations and electromagnetic waves in nanoobjects.

Electronic structure and soft-X-ray-induced photoreduction studies of iron-based magnetic polyoxometalates of type {(M)M5}12Fe(III)30 (M = Mo(VI), W(VI)).

Giant Keplerate-type molecules with a {Mo72Fe30} core show a number of very interesting properties, making them particularly promising for various applications. So far, only limited data on the electronic structure of these molecules from X-ray spectra and electronic structure calculations have been available. Here we present a combined electronic and magnetic structure study of three Keplerate-type nanospheres--two with a {Mo72Fe30} core and one with a {W72Fe30} core by means of X-ray absorption spectroscopy, X-ray magnetic circular dichroism (XMCD), SQUID magnetometry, and complementary theoretical approaches. Furthermore, we present detailed studies of the Fe(3+)-to-Fe(2+) photoreduction process, which is induced under soft X-ray radiation in these molecules. We observe that the photoreduction rate greatly depends on the ligand structure surrounding the Fe ions, with negatively charged ligands leading to a dramatically reduced photoreduction rate. This opens the possibility of tailoring such polyoxometalates by X-ray spectroscopic studies and also for potential applications in the field of X-ray induced photochemistry.

Environmental influence on the single-molecule magnet behavior of [Mn(III)6Cr(III)]3+: molecular symmetry versus solid-state effects.

The structural, spectroscopic, and magnetic properties of a series of [Mn(III)(6)Cr(III)](3+) (= [{(talen(t-Bu(2)))Mn(III)(3)}(2){Cr(III)(CN)(6)}](3+)) compounds have been investigated by single-crystal X-ray diffraction (XRD), Fourier transform infrared (FT-IR) and electronic absorption spectroscopy, elemental analysis, electro spray ionization-mass spectrometry (ESI-MS) and matrix-assisted laser desorption ionization-mass spectrometry (MALDI-MS), cyclic voltammetry, AC and DC magnetic measurements, as well as theoretical analysis. The crystal structures obtained with [Cr(III)(CN)(6)](3-) as a counterion exhibit (quasi-)one-dimensional (1D) chains formed by hydrogen-bonded (1) or covalently linked (2) trications and trianions. The rod-shaped anion lactate enforces a rod packing of the [Mn(III)(6)Cr(III)](3+) complexes in the highly symmetric space group R3[overline] (3) with a collinear arrangement of the molecular S(6) axes. Incorporation of the spherical anion BPh(4)(-) leads to less-symmetric crystal structures (4-6) with noncollinear orientations of the [Mn(III)(6)Cr(III)](3+) complexes, as evidenced by the angle between the approximate molecular C(3) axes taking no specific values in the range of 2°-69°. AC magnetic measurements on freshly isolated crystals (1a and 3a-6a), air-dried crystals (3b-6b), and vacuum-dried powder samples (3c-6c) indicate single-molecule magnet (SMM) behavior for all samples with U(eff) values up to 28 K. The DC magnetic data are analyzed by a full-matrix diagonalization of the appropriate spin-Hamiltonian including isotropic exchange, zero-field splitting, and Zeeman interaction, taking into account the relative orientation of the D-tensors. Simulations for 3a-6a and 3c-6c indicate a weak antiferromagnetic exchange between the Mn(III) ions in the trinuclear subunits (J(Mn-Mn) = -0.70 to -0.85 cm(-1), H(ex) = -2∑(i

A star-shaped heteronuclear Cr(III)Mn(II)3 species and its precise electronic and magnetic structure: spin frustration studied by X-ray spectroscopic, magnetic, and theoretical methods.

Molecular magnets incorporate transition-metal ions with organic groups providing a bridge to mediate magnetic exchange interactions between the ions. Among them are star-shaped molecules in which antiferromagnetic couplings between the central and peripheral atoms are predominantly present. Those configurations lead to an appreciable spin moment in the nonfrustrated ground state. In spite of its topologically simple magnetic structure, the [Cr(III)Mn(II)(3) (PyA)(6)Cl(3)] (CrMn(3)) molecule, in which PyA represents the monoanion of syn-pyridine-2-aldoxime, exhibits nontrivial magnetic properties, which emerge from the combined action of single-ion anisotropy and frustration. In the present work, we elucidate the underlying electronic and magnetic properties of the heteronuclear, spin-frustrated CrMn(3) molecule by applying X-ray magnetic circular dichroism (XMCD), as well as magnetization measurements in high magnetic fields, density functional theory, and ligand-field multiplet calculations. Quantum-model calculations based on a Heisenberg Hamiltonian augmented with local anisotropic terms enable us not only to improve the accuracy of the exchange interactions but also to determine the dominant local anisotropies. A discussion of the various spin Hamiltonian parameters not only leads to a validation of our element selective transition metal L edge XMCD spin moments at a magnetic field of 5 T and a temperature of 5 K but also allows us to monitor an interesting effect of anisotropy and frustration of the manganese and chromium ions.

Star-shaped molecule of MnII4O6 core with an St=10 high-spin state. A theoretical and experimental study with XPS, XMCD, and other magnetic methods.

We report a comprehensive study of the electronic and magnetic properties of a star-shaped molecule comprising a MnII4O6 core. One feature of this compound is weak magnetic coupling constants compared to other similar polyoxo compounds. This leads to complicated low-lying magnetic states in which the ground state is not well separated from the upper-lying states, yielding a high-spin molecule with a giant magnetic moment of up to 20 microB/formula unit. We apply X-ray diffraction and magnetometry as well as other X-ray spectroscopic techniques, namely, X-ray photoelectron spectroscopy, X-ray magnetic circular dichroism, and X-ray emission spectroscopy. We compare our experimental results with ab initio electronic band structure calculations as well as the localized electronic structure around the Mn2+ ions with charge-transfer multiplet calculations.

Supramolecular self-assembled polynuclear complexes from tritopic, tetratopic, and pentatopic ligands: structural, magnetic and surface studies.

Polymetallic, highly organized molecular architectures can be created by "bottom-up" self-assembly methods using ligands with appropriately programmed coordination information. Ligands based on 2,6-picolyldihydrazone (tritopic and pentatopic) and 3,6-pyridazinedihydrazone (tetratopic) cores, with tridentate coordination pockets, are highly specific and lead to the efficient self-assembly of square [3 x 3] Mn9, [4 x 4] Mn16, and [5 x 5] Mn25 nanoscale grids. Subtle changes in the tritopic ligand composition to include bulky end groups can lead to a rectangular 3 x [1 x 3] Mn9 grid, while changing the central pyridazine to a more sterically demanding pyrazole leads to simple dinuclear copper complexes, despite the potential for binding four metal ions. The creation of all bidentate sites in a tetratopic pyridazine ligand leads to a dramatically different spiral Mn4 strand. Single-crystal X-ray structural data show metallic connectivity through both mu-O and mu-NN bridges, which leads to dominant intramolecular antiferromagnetic spin exchange in all cases. Surface depositions of the Mn9, Mn16, and Mn25 square grid molecules on graphite (HOPG) have been examined using STM/CITS imagery (scanning tunneling microscopy/current imaging tunneling spectroscopy), where tunneling through the metal d-orbital-based HOMO levels reveals the metal ion positions. CITS imagery of the grids clearly shows the presence of 9, 16, and 25 manganese ions in the expected square grid arrangements, highlighting the importance and power of this technique in establishing the molecular nature of the surface adsorbed species. Nanoscale, electronically functional, polymetallic assemblies of this sort, created by such a bottom-up synthetic approach, constitute important components for advanced molecule-based materials.

The [Fe(III)[Fe(III)(L1)2]3] star-type single-molecule magnet.

Star-shaped complex [Fe(III)[Fe(III)(L1)2]3] (3) was synthesized starting from N-methyldiethanolamine H2L1 (1) and ferric chloride in the presence of sodium hydride. For 3, two different high-spin iron(III) ion sites were confirmed by Mössbauer spectroscopy at 77 K. Single-crystal X-ray structure determination revealed that 3 crystallizes with four molecules of chloroform, but, with only three molecules of dichloromethane. The unit cell of 3.4CHCl3 contains the enantiomers (delta)-[(S,S)(R,R)(R,R)] and (lambda)-[(R,R)(S,S)(S,S)], whereas in case of 3.3CH2Cl2 four independent molecules, forming pairs of the enantiomers [lambda-(R,R)(R,R)(R,R)]-3 and [lambda-(S,S)(S,S)(S,S)]-3, were observed in the unit cell. According to SQUID measurements, the antiferromagnetic intramolecular coupling of the iron(III) ions in 3 results in a S = 10/2 ground state multiplet. The anisotropy is of the easy-axis type. EPR measurements enabled an accurate determination of the ligand-field splitting parameters. The ferric star 3 is a single-molecule magnet (SMM) and shows hysteretic magnetization characteristics below a blocking temperature of about 1.2 K. However, weak intermolecular couplings, mediated in a chainlike fashion via solvent molecules, have a strong influence on the magnetic properties. Scanning tunneling microscopy (STM) and scanning tunneling spectroscopy (STS) were used to determine the structural and electronic properties of star-type tetranuclear iron(III) complex 3. The molecules were deposited onto highly ordered pyrolytic graphite (HOPG). Small, regular molecule clusters, two-dimensional monolayers as well as separated single molecules were observed. In our STS measurements we found a rather large contrast at the expected locations of the metal centers of the molecules. This direct addressing of the metal centers was confirmed by DFT calculations.

STM/STS observation of polyoxoanions on HOPG surfaces: the wheel-shaped [Cu20Cl(OH)24(H2O)12(P8W48O184)]25- and the ball-shaped [{Sn(CH3)2(H2O)}24{Sn(CH3)2}12(A-PW9O34)12]36-.

A combination of scanning tunneling microscopy (STM) and scanning tunneling spectroscopy (STS) techniques have been performed on the wheel-shaped [Cu20Cl(OH)24(H2O)12(P8W48O184)]25- and the ball-shaped [{Sn(CH3)2(H2O)}24{Sn(CH3)2}12(A-PW9O34)12]36- deposited on highly oriented pyrolytic graphite surfaces. Small, regular molecule clusters, as well as separated single molecules, were observed. The size of the molecules is in agreement with the data determined by X-ray crystallography. In STS measurements, we found a rather large contrast at the expected location of the Cu metal centers in our molecules, i.e., the location of the individual Cu ions in their organic matrix is directly addressable by STS.