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1.
Heliyon ; 10(15): e35054, 2024 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-39161827

RESUMEN

Progress in soybean (Glycine max L.) breeding has led to a reduction in optimal seeding rates due to enhanced branching capacity over time. However, less is known about the changes in canopy architecture between old and modern soybean genotypes at varying row spacing and their impact on yield and seed quality through the main stem and branches. Therefore, this study aimed to i) evaluate yield and seed quality responses of an old and modern soybean genotype at different row spacings and ii) examine the yield and seed quality of branches and the main stem. Trials were conducted in Kansas (United States, US) during 2020 and 2021, comparing two genotypes (old, released in 1980, and modern, released in 2013) at four row spacings (0.19, 0.38, 0.76, and 1.52 m) under rainfed conditions. Seed yield and quality (protein and oil concentrations, %) were assessed at the end of each growing season. In 2021, both genotypes had low and similar yields at all row spacings (averaging 2481 kg ha-1) with 2.5 % less protein on branches compared to the main stem. However, 2022 resulted in a high-yielding environment, with the modern yielding 50 % more (3584 kg ha-1) than the old (2315 kg ha-1) genotype in narrow row spacings (<0.38 m). Additionally, the modern genotype showed a three-fold greater contribution to yield from branches (1113 kg ha-1) relative to the old genotype (379 kg ha-1). Despite the high yields observed in narrow rows, the modern genotype maintained protein levels. These results highlight the importance of row spacing as a key management practice for improving yield while maintaining protein levels in high yield conditions.

2.
Front Plant Sci ; 15: 1396498, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38978515

RESUMEN

This study was conducted in controlled environmental conditions to systematically evaluate multi-traits responses of winter wheat (Triticum aestivum L.) genotypes to different salinity levels. Responses were assessed at the germination to early seedling stage (Experiment 1). Seeds of different genotypes (n=292) were subjected to three salinity levels (0 [control], 60, and 120 mM NaCl). Principal Component Analysis (PCA) revealed that among studied traits seedling vigor index (SVI) contributed more towards the diverse response of genotypes to salinity stress. Based on SVI, eight contrasting genotypes assumed to be tolerant (Gage, Guymon, MTS0531, and Tascosa) and susceptible (CO04W320, Carson, TX04M410211) were selected for further physio-biochemical evaluation at the booting stage (Experiment 2) and to monitor grain yield. Higher level of salinity (120 mM NaCl) exposure at the booting stage increased thylakoid membrane damage, lipid peroxidation, sugars, proline, and protein while decreasing photosynthesis, chlorophyll index, starch, and grain yield. Based on grain yield, the assumed magnitude of the genotypic response shown in Experiment 1 was not analogous in Experiment 2. This indicates the necessity of individual screening of genotypes at different sensitive growth stages for identifying true salinity-tolerant and susceptible genotypes at a particular growth stage. However, based on higher grain yield and its least percentage reduction under higher salinity, Guymon and TX04M410211 were identified as tolerant, and Gage and CO04W320 as susceptible at the booting stage, and their biparental population can be used to identify genomic regions for booting stage-specific salinity response.

3.
Plants (Basel) ; 13(13)2024 Jun 29.
Artículo en Inglés | MEDLINE | ID: mdl-38999638

RESUMEN

The radioactive fission product 90Sr has a sufficient half-life (28.8 years) to be detected long after its appearance in the environment. After its uptake into the soil-edible plant system, it enters the food chain and represents a potential source of contamination that threatens human health. Due to these facts, tracking the distribution of the artificial radionuclide 90Sr in the soil-edible plant system is a subject of intense research. The tracking of the 90Sr radionuclide distribution in the soil profile, as well as in the crops on the long-term experimental fields was carried out using beta radiation spectrometry. The radiochemical analytical method was used to analyze the 90Sr content in cultivated soil and crops. The conducted study focused on the experimental substantiation of the developed model for predicting the behavior of 90Sr in the cultivated soil-crop system. The results of using the applied radioecological model for the transfer of 90Sr from the soil to the above-ground part of crops showed a relatively good agreement with the experimentally determined values of the soil-crop transfer factor, which indicates that the used model can be successfully applied for the prediction of the behavior of 90Sr in the soil-soil solution-crop system.

4.
Plants (Basel) ; 13(13)2024 Jun 29.
Artículo en Inglés | MEDLINE | ID: mdl-38999640

RESUMEN

Plant density, the number of plants per unit area, is an important factor in maize production. Plant density exhibits high variability and depends on a number of factors, i.e., the length of the growing period of the hybrid, the morphological characteristics of the plant, the amount and distribution of precipitation during the growing season, the reserve of winter moisture in the soil, the level of soil fertility, the time of sowing, agronomic management practices, and biomass and yield. The objective of this paper was to determine the agronomic optimal plant density for maize in calcareous soil in the semiarid conditions of the South Pannonian Basin. Field experiments were conducted at the experimental field-IFVCNS (two locations: Rimski Sancevi and Srbobran) to evaluate four plant densities (55,000; 65,000; 75,000; and 85,000 plants ha-1). The experimental sites "Rimski Sancevi" and "Srbobran" are located in the typical chernozem zone of the southern part of the Pannonian Basin. On average for all hybrids, the grain yield followed a second-degree polynomial model in response to the increasing planting density, with the highest value at plant density (PD2: 65,000 plants ha-1). To achieve maximum yield, the optimal planting density for corn hybrids of the FAO 200 group should be 57,600 plants ha-1, for the FAO 300 group 64,300 plants ha-1, for the FAO 400 group 68,700 plants ha-1, for the FAO 500 group 66,800 plants ha-1, and for the FAO 600 group 63,500 plants ha-1. "Which-Won-Where" biplot showed that the hybrid H24 from FAO 600 group was the highest yielding in all of the environments. Hybrid H17 from the same FAO group was the most stable across all of the environments. Selected hybrids may further be studied for planting density and nutritional requirements for getting maximum yield. By introducing new maize hybrids with higher genetic yield potential and better agronomic management practices, modern mechanization and agricultural techniques allowed to increase planting densities.

5.
Front Plant Sci ; 15: 1419764, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38938633

RESUMEN

Introduction: The ongoing global expansion of salt-affected land is a significant factor, limiting the growth and yield of crops, particularly rice (Oryza sativa L). This experiment explores the mitigation of salt-induced damage in rice (cv BRRI dhan100) following the application of plant growth-promoting rhizobacteria (PGPR). Methods: Rice seedlings, at five- and six-weeks post-transplanting, were subjected to salt stress treatments using 50 and 100 mM NaCl at seven-day intervals. Bacterial cultures consisting of endophytic PGPR (Bacillus subtilis and B. aryabhattai) and an epiphytic PGPR (B. aryabhattai) were administered at three critical stages: transplantation of 42-day-old seedlings, vegetative stage at five weeks post-transplantation, and panicle initiation stage at seven weeks post-transplantation. Results: Salt stress induced osmotic stress, ionic imbalances, and oxidative damage in rice plants, with consequent negative effects on growth, decrease in photosynthetic efficiency, and changes in hormonal regulation, along with increased methylglyoxal (MG) toxicity. PGPR treatment alleviated salinity effects by improving plant antioxidant defenses, restoring ionic equilibrium, enhancing water balance, increasing nutrient uptake, improving photosynthetic attributes, bolstering hormone synthesis, and enhancing MG detoxification. Discussion: These findings highlight the potential of PGPR to bolster physiological and biochemical functionality in rice by serving as an effective buffer against salt stress-induced damage. B. subtilis showed the greatest benefits, while both the endophytic and epiphytic B. aryabhattai had commendable effects in mitigating salt stress-induced damage in rice plants.

6.
Front Plant Sci ; 15: 1391496, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38911976

RESUMEN

Chickpea (Cicer arietinum L.) is a vital grain legume, offering an excellent balance of protein, carbohydrates, fats, fiber, essential micronutrients, and vitamins that can contribute to addressing the global population's increasing food and nutritional demands. Chickpea protein offers a balanced source of amino acids with high bioavailability. Moreover, due to its balanced nutrients and affordable price, chickpea is an excellent alternative to animal protein, offering a formidable tool for combating hidden hunger and malnutrition, particularly prevalent in low-income countries. This review examines chickpea's nutritional profile, encompassing protein, amino acids, carbohydrates, fatty acids, micronutrients, vitamins, antioxidant properties, and bioactive compounds of significance in health and pharmaceutical domains. Emphasis is placed on incorporating chickpeas into diets for their myriad health benefits and nutritional richness, aimed at enhancing human protein and micronutrient nutrition. We discuss advances in plant breeding and genomics that have facilitated the discovery of diverse genotypes and key genomic variants/regions/quantitative trait loci contributing to enhanced macro- and micronutrient contents and other quality parameters. Furthermore, we explore the potential of innovative breeding tools such as CRISPR/Cas9 in enhancing chickpea's nutritional profile. Envisioning chickpea as a nutritionally smart crop, we endeavor to safeguard food security, combat hunger and malnutrition, and promote dietary diversity within sustainable agrifood systems.

7.
BMC Plant Biol ; 24(1): 578, 2024 Jun 19.
Artículo en Inglés | MEDLINE | ID: mdl-38890566

RESUMEN

BACKGROUND: Wheat (Triticum aestivum L.) is one of the most important cereal crop species worldwide, but its growth and development are adversely influenced by drought stress. However, the application of trace elements is known to improve plant physiology under water-limited conditions. In this study, the effects of drought stress on wheat plants were investigated, with a focus on potential mitigation by foliar application of selenium nanoparticles (Se(np)) and sodium selenate (Na2SeO4). The experiment was conducted in a net house using a completely randomized design with four replications. The treatments involved three levels of drought stress (mild, moderate, and severe) started at 30 days after sowing (DAS), with foliar sprays of Se(np) and Se (both 25 µM) initiated at 27 DAS and repeated 4 times at 7-day intervals until 55 DAS. RESULTS: Drought stress significantly reduced plant growth, whereas Se(np) and Se sprays enhanced it. Drought stress induced chlorophyll degradation, increased malondialdehyde and hydrogen peroxide levels, impaired membrane stability, and caused electrolyte leakage. Severe drought stress reduced the levels of antioxidants (e.g., proline, ascorbate, and glutathione by 4.18-fold, 80%, and 45%) and the activities of antioxidant enzymes (ascorbate peroxidase, dehydroascorbate reductase, and others). Conversely, treatment with Se(np) and Se restored these parameters, for example, 1.23-fold higher total chlorophyll content with Se(np) treatment, 26% higher APX activity with Se treatment, 15% lower electrolyte leakage with Se treatment in wheat plants under severe drought stress. This Se-associated enhancement facilitated rapid scavenging of reactive oxygen species and reduced methylglyoxal toxicity, thereby diminishing oxidative stress and positively affecting the morphophysiological and biochemical responses of the plants under drought. CONCLUSIONS: Drought-stressed wheat plants exhibited reductions in physiological processes, including water uptake and photosynthetic activity. However, Se(np) and Se applied at 25 µM mitigated the detrimental effects of drought. The application of Se(np) was notably more effective than the application of Se in mitigating drought stress, indicating the potential of the application of Se(np) as a sustainable agricultural practice under water-limited conditions.


Asunto(s)
Nanopartículas , Estrés Oxidativo , Especies Reactivas de Oxígeno , Selenio , Triticum , Triticum/efectos de los fármacos , Triticum/fisiología , Triticum/metabolismo , Triticum/crecimiento & desarrollo , Estrés Oxidativo/efectos de los fármacos , Selenio/farmacología , Especies Reactivas de Oxígeno/metabolismo , Sequías , Clorofila/metabolismo , Antioxidantes/metabolismo , Deshidratación , Peróxido de Hidrógeno/metabolismo
9.
Plant Genome ; 17(2): e20461, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38797919

RESUMEN

Nitrogen (N) as an inorganic macronutrient is inevitable for plant growth, development, and biomass production. Many external factors and stresses, such as acidity, alkalinity, salinity, temperature, oxygen, and rainfall, affect N uptake and metabolism in plants. The uptake of ammonium (NH4 +) and nitrate (NO3 -) in plants mainly depends on soil properties. Under the sufficient availability of NO3 - (>1 mM), low-affinity transport system is activated by gene network NRT1, and under low NO3 - availability (<1 mM), high-affinity transport system starts functioning encoded by NRT2 family of genes. Further, under limited N supply due to edaphic and climatic factors, higher expression of the AtNRT2.4 and AtNRT2.5T genes of the NRT2 family occur and are considered as N remobilizing genes. The NH4 + ion is the final form of N assimilated by cells mediated through the key enzymes glutamine synthetase and glutamate synthase. The WRKY1 is a major transcription factor of the N regulation network in plants. However, the transcriptome and metabolite profiles show variations in N assimilation metabolites, including glycine, glutamine, and aspartate, under abiotic stresses. The overexpression of NO3 - transporters (OsNRT2.3a and OsNRT1.1b) can significantly improve the biomass and yield of various crops. Altering the expression levels of genes could be a valuable tool to improve N metabolism under the challenging conditions of soil and environment, such as unfavorable temperature, drought, salinity, heavy metals, and nutrient stress.


Asunto(s)
Nitrógeno , Estrés Fisiológico , Nitrógeno/metabolismo , Plantas/metabolismo , Plantas/genética , Regulación de la Expresión Génica de las Plantas
10.
Int J Biometeorol ; 68(6): 1179-1197, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38676745

RESUMEN

Cotton is a major economic crop predominantly cultivated under rainfed situations. The accurate prediction of cotton yield invariably helps farmers, industries, and policy makers. The final cotton yield is mostly determined by the weather patterns that prevail during the crop growing phase. Crop yield prediction with greater accuracy is possible due to the development of innovative technologies which analyses the bigdata with its high-performance computing abilities. Machine learning technologies can make yield prediction reasonable and faster and with greater flexibility than process based complex crop simulation models. The present study demonstrates the usability of ML algorithms for yield forecasting and facilitates the comparison of different models. The cotton yield was simulated by employing the weekly weather indices as inputs and the model performance was assessed by nRMSE, MAPE and EF values. Results show that stacked generalised ensemble model and artificial neural networks predicted the cotton yield with lower nRMSE, MAPE and higher efficiency compared to other models. Variable importance studies in LASSO and ENET model found minimum temperature and relative humidity as the main determinates of cotton yield in all districts. The models were ranked based these performance metrics in the order of Stacked generalised ensemble > ANN > PCA ANN > SMLR ANN > LASSO> ENET > SVM > PCA SMLR > SMLR SVM > SMLR. This study shows that stacked generalised ensembling and ANN method can be used for reliable yield forecasting at district or county level and helps stakeholders in timely decision-making.


Asunto(s)
Predicción , Gossypium , Aprendizaje Automático , Redes Neurales de la Computación , Tiempo (Meteorología) , Gossypium/crecimiento & desarrollo , Lluvia , Análisis de Regresión , Modelos Teóricos
11.
Sci Data ; 11(1): 374, 2024 Apr 12.
Artículo en Inglés | MEDLINE | ID: mdl-38609389

RESUMEN

The determination of changes in soil organic carbon (SOC) content under different cropping systems is necessary for policy development oriented towards soil conservation, C sequestration, and future C credit markets. The aim of this study was to generate an open SOC dataset resulting from a systematic literature search related to the agricultural systems for Southeast Asia. The dataset has 209 articles and 4341 observations on soils of cropping systems in this region from articles published between 1987 and 2023. This dataset included different management practices, land uses, soil sampling depth, and length of SOC content assessment. In addition, inherent features of crop production reported in the experiments were included in the dataset. This dataset can be applied to quantify and compare the impact of different land uses or management practices on SOC content, providing foundational knowledge towards identifying sustainable practices. Lastly, it is a useful guide for future regional SOC sequestration policies and the development of C credit markets.

12.
Plants (Basel) ; 13(6)2024 Mar 14.
Artículo en Inglés | MEDLINE | ID: mdl-38592917

RESUMEN

Identifying the contributions of climate factors and fertilization to maize yield is significant for the assessment of climate change impacts on maize production under semiarid conditions. This experiment was conducted with an overall objective to find how N fertilization and cultivar interactions along with climatic conditions determine the mineral composition and maize yield responses of four divergent maize cultivars grown under eight different fertilization levels. The results showed that element contents were significantly affected by year (Y), cultivar (C), N fertilization, and N × C interaction. The element contents of grains were mainly influenced by N rate or N × C interactions. The results showed that maize yield was significantly affected by year (Y), genotype (G), N fertilization (N), and Y × G × N interaction. These results implied that the maize yield was significantly affected by changes in genotypes and environments. Overall, our findings are a result of the interactions of genetic, environmental, and agronomic management factors. Future studies could evaluate more extreme plant densities, N fertilizer levels, and environments to further enhance our understanding of management effects on the mineral composition and maize yield in calcareous soil.

13.
J Agric Food Chem ; 72(13): 6931-6941, 2024 Apr 03.
Artículo en Inglés | MEDLINE | ID: mdl-38514379

RESUMEN

Tembotrione is a triketone herbicide widely used for broad-spectrum weed control in corn but not registered for use in wheat. A wide collection of spring, winter, and EMS-derived mutant lines of wheat was evaluated for their response to tembotrione treatment. Two winter wheat (WW) genotypes (WW-1 and WW-2) were found to be least sensitive to this herbicide, surviving >6 times the field recommended dose (92 g ai ha-1) compared to the most sensitive genotype (WW-24). Further, HPLC analysis using [14C] tembotrione suggested that both WW-1 and WW-2 metabolized tembotrione rapidly to nontoxic metabolites. Pretreatment with a P450 inhibitor (malathion) followed by tembotrione application increased the sensitivity of WW-1 and WW-2 genotypes to this herbicide, suggesting likely involvement of P450 enzymes in metabolizing tembotrione similar to corn. Overall, our results suggest that the genotypes WW-1 and WW-2 can potentially be used to develop tembotrione-resistant wheat varieties.


Asunto(s)
Herbicidas , Herbicidas/farmacología , Herbicidas/metabolismo , Triticum/genética , Triticum/metabolismo , Ciclohexanonas/farmacología , Sulfonas/farmacología , Sistema Enzimático del Citocromo P-450/metabolismo , Zea mays/metabolismo
14.
Plant Genome ; 17(1): e20427, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38239091

RESUMEN

Buckwheat (Fagopyrum spp.) is an important nutritional and nutraceutical-rich pseudo-cereal crop. Despite its obvious potential as a functional food, buckwheat has not been fully harnessed due to its low yield, self-incompatibility, increased seed cracking, limited seed set, lodging, and frost susceptibility. The inadequate availability of genomics resources in buckwheat is one of the major reasons for this. In the present study, genome-wide association mapping (GWAS) was conducted to identify loci associated with various morphological and yield-related traits in buckwheat. High throughput genotyping by sequencing led to the identification of 34,978 single nucleotide polymorphisms that were distributed across eight chromosomes. Population structure analysis grouped the genotypes into three sub-populations. The genotypes were also characterized for various qualitative and quantitative traits at two diverse locations, the analysis of which revealed a significant difference in the mean values. The association analysis revealed a total of 71 significant marker-trait associations across eight chromosomes. The candidate genes were identified near 100 Kb of quantitative trait loci (QTLs), providing insights into several metabolic and biosynthetic pathways. The integration of phenology and GWAS in the present study is useful to uncover the consistent genomic regions, related markers associated with various yield-related traits, and potential candidate genes having implications for being utilized in molecular breeding for the improvement of economically important traits in buckwheat. Moreover, the identified QTLs will assist in tracking the desirable alleles of target genes within the buckwheat breeding populations/germplasm.


Asunto(s)
Fagopyrum , Sitios de Carácter Cuantitativo , Fagopyrum/genética , Genotipo , Polimorfismo de Nucleótido Simple , Estudio de Asociación del Genoma Completo , Ligamiento Genético , Fitomejoramiento
15.
Plants (Basel) ; 13(1)2024 Jan 04.
Artículo en Inglés | MEDLINE | ID: mdl-38202451

RESUMEN

Maize is a globally significant cereal crop, contributing to the production of essential food products and serving as a pivotal resource for diverse industrial applications. This study investigated the proximate analysis of maize hybrids from different FAO maturity groups in Serbia, exploring variations in polyphenols, flavonoids, carotenoids, tocopherols, and fatty acids with the aim of understanding how agroecological conditions influence the nutritional potential of maize hybrids. The results indicate substantial variations in nutritional composition and antioxidant properties among different maturity groups. The levels of total polyphenols varied among FAO groups, indicating that specific hybrids may offer greater health benefits. Flavonoids and carotenoids also showed considerable variation, with implications for nutritional quality. Tocopherol content varied significantly, emphasizing the diversity in antioxidant capacity. Fatty acid analysis revealed high levels of unsaturated fatty acids, particularly linoleic acid, indicating favorable nutritional and industrial properties. The study highlights the importance of considering maturity groups in assessing the nutritional potential of maize hybrids.

16.
Plant Genome ; 17(1): e20378, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-37587553

RESUMEN

Global mean temperature is increasing at a rapid pace due to the rapid emission of greenhouse gases majorly from anthropogenic practices and predicted to rise up to 1.5°C above the pre-industrial level by the year 2050. The warming climate is affecting global crop production by altering biochemical, physiological, and metabolic processes resulting in poor growth, development, and reduced yield. Maize is susceptible to heat stress, particularly at the reproductive and early grain filling stages. Interestingly, heat stress impact on crops is closely regulated by associated environmental covariables such as humidity, vapor pressure deficit, soil moisture content, and solar radiation. Therefore, heat stress tolerance is considered as a complex trait, which requires multiple levels of regulations in plants. Exploring genetic diversity from landraces and wild accessions of maize is a promising approach to identify novel donors, traits, quantitative trait loci (QTLs), and genes, which can be introgressed into the elite cultivars. Indeed, genome wide association studies (GWAS) for mining of potential QTL(s) and dominant gene(s) is a major route of crop improvement. Conversely, mutation breeding is being utilized for generating variation in existing populations with narrow genetic background. Besides breeding approaches, augmented production of heat shock factors (HSFs) and heat shock proteins (HSPs) have been reported in transgenic maize to provide heat stress tolerance. Recent advancements in molecular techniques including clustered regularly interspaced short palindromic repeats (CRISPR) would expedite the process for developing thermotolerant maize genotypes.


Asunto(s)
Estudio de Asociación del Genoma Completo , Zea mays , Zea mays/genética , Fitomejoramiento , Respuesta al Choque Térmico , Sitios de Carácter Cuantitativo
17.
Environ Sci Pollut Res Int ; 31(1): 1562-1575, 2024 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-38047999

RESUMEN

Biochar (BC) and humic acid (HA) are well-documented in metal/metalloid detoxification, but their regulatory role in conferring plant oxidative stress under arsenic (As) stress is poorly understood. Therefore, we aimed at investigating the role of BC and HA (0.2 and 0.4 g kg-1 soil) in the detoxification of As (0.25 mM sodium arsenate) toxicity in rice (Oryza sativa L. cv. BRRI dhan75). Arsenic exhibited an increased lipid peroxidation, hydrogen peroxide, electrolyte leakage, and proline content which were 32, 30, 9, and 89% higher compared to control. In addition, the antioxidant defense system of rice consisting of non-enzyme antioxidants (18 and 43% decrease in ascorbate and glutathione content) and enzyme activities (23-50% reduction over control) was decreased as a result of As toxicity. The damaging effect of As was prominent in plant height, biomass acquisition, tiller number, and relative water content. Furthermore, chlorophyll and leaf area also exhibited a decreasing trend due to toxicity. Arsenic exposure also disrupted the glyoxalase system (23 and 33% decrease in glyoxalase I and glyoxalase II activities). However, the application of BC and HA recovered the reactive oxygen species-induced damages in plants, upregulated the effectiveness of the ascorbate-glutathione pool, and accelerated the activities of antioxidant defense and glyoxalase enzymes. These positive roles of BC and HA ultimately resulted in improved plant characteristics with better plant-water status and regulated proline content that conferred As stress tolerance in rice. So, it can be concluded that BC and HA effectively mitigated As-induced physiology and oxidative damage in rice plants. Therefore, BC and HA could be used as potential soil amendments in As-contaminated rice fields.


Asunto(s)
Arsénico , Carbón Orgánico , Lactoilglutatión Liasa , Oryza , Antioxidantes/metabolismo , Oryza/metabolismo , Sustancias Húmicas , Arsénico/toxicidad , Estrés Oxidativo , Ácido Ascórbico/farmacología , Glutatión/metabolismo , Lactoilglutatión Liasa/metabolismo , Lactoilglutatión Liasa/farmacología , Peroxidación de Lípido , Prolina/metabolismo , Agua , Plantones
18.
Sci Rep ; 13(1): 21917, 2023 12 08.
Artículo en Inglés | MEDLINE | ID: mdl-38081914

RESUMEN

This genome-wide association studies (GWAS) used a subset of 96 diverse sorghum accessions, constructed from a large collection of 219 accessions for mining novel genetic loci linked to major agronomic, root morphological and physiological traits. The subset yielded 43,452 high quality single nucleotide polymorphic (SNP) markers exhibiting high allelic diversity. Population stratification showed distinct separation between caudatum and durra races. Linkage disequilibrium (LD) decay was rapidly declining with increasing physical distance across all chromosomes. The initial 50% LD decay was ~ 5 Kb and background level was within ~ 80 Kb. This study detected 42 significant quantitative trait nucleotide (QTNs) for different traits evaluated using FarmCPU, SUPER and 3VmrMLM which were in proximity with candidate genes related and were co-localized in already reported quantitative trait loci (QTL) and phenotypic variance (R2) of these QTNs ranged from 3 to 20%. Haplotype validation of the candidate genes from this study resulted nine genes showing significant phenotypic difference between different haplotypes. Three novel candidate genes associated with agronomic traits were validated including Sobic.001G499000, a potassium channel tetramerization domain protein for plant height, Sobic.010G186600, a nucleoporin-related gene for dry biomass, and Sobic.002G022600 encoding AP2-like ethylene-responsive transcription factor for plant yield. Several other candidate genes were validated and associated with different root and physiological traits including Sobic.005G104100, peroxidase 13-related gene with root length, Sobic.010G043300, homologous to Traes_5BL_8D494D60C, encoding inhibitor of apoptosis with iWUE, and Sobic.010G125500, encoding zinc finger, C3HC4 type domain with Abaxial stomatal density. In this study, 3VmrMLM was more powerful than FarmCPU and SUPER for detecting QTNs and having more breeding value indicating its reliable output for validation. This study justified that the constructed subset of diverse sorghums can be used as a panel for mapping other key traits to accelerate molecular breeding in sorghum.


Asunto(s)
Estudio de Asociación del Genoma Completo , Sorghum , Estudio de Asociación del Genoma Completo/métodos , Sorghum/genética , Fitomejoramiento , Sitios de Carácter Cuantitativo , Fenotipo , Grano Comestible/genética , Nucleótidos , Polimorfismo de Nucleótido Simple
19.
Genes (Basel) ; 14(12)2023 12 04.
Artículo en Inglés | MEDLINE | ID: mdl-38136999

RESUMEN

Weeds can negatively impact crop yields and the ecosystem's health. While many weed management strategies have been developed and deployed, there is a greater need for the development of sustainable methods for employing integrated weed management. Gene drive systems can be used as one of the approaches to suppress the aggressive growth and reproductive behavior of weeds, although their efficacy is yet to be tested. Their popularity in insect pest management has increased, however, with the advent of CRISPR-Cas9 technology, which provides specificity and precision in editing the target gene. This review focuses on the different types of gene drive systems, including the use of CRISPR-Cas9-based systems and their success stories in pest management, while also exploring their possible applications in weed species. Factors that govern the success of a gene drive system in weeds, including the mode of reproduction, the availability of weed genome databases, and well-established transformation protocols are also discussed. Importantly, the risks associated with the release of weed populations with gene drive-bearing alleles into wild populations are also examined, along with the importance of addressing ecological consequences and ethical concerns.


Asunto(s)
Sistemas CRISPR-Cas , Tecnología de Genética Dirigida , Tecnología de Genética Dirigida/métodos , Ecosistema , Control de Malezas/métodos , Malezas/genética
20.
Plant Physiol Biochem ; 205: 108164, 2023 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-38008006

RESUMEN

Unusual daily temperature fluctuations caused by climate change and climate variability adversely impact agricultural crop production. Since plants are immobile and constantly receive external environmental signals, such as extreme high (heat) and low (cold) temperatures, they have developed complex molecular regulatory mechanisms to cope with stressful situations to sustain their natural growth and development. Among these mechanisms, non-coding RNAs (ncRNAs), particularly microRNAs (miRNAs), small-interfering RNAs (siRNAs), and long-non-coding RNAs (lncRNAs), play a significant role in enhancing heat and cold stress tolerance. This review explores the pivotal findings related to miRNAs, siRNAs, and lncRNAs, elucidating how they functionally regulate plant adaptation to extreme temperatures. In addition, this review addresses the challenges associated with uncovering these non-coding RNAs and understanding their roles in orchestrating heat and cold tolerance in plants.


Asunto(s)
MicroARNs , ARN Largo no Codificante , Temperatura , ARN Largo no Codificante/genética , ARN de Planta , MicroARNs/genética , ARN Interferente Pequeño , Productos Agrícolas
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