[Human parasites in surface water used for recreation in Salta, Argentina]. / Parásitos humanos en aguas superficiales de uso recreativo en Salta, Argentina.

Waterborne diseases can have different origins, micro-organisms such as bacteria and parasites being the most important ones. In this study, two recreational aquatic environments were studied in the province of Salta, Argentina. Water samples collected from three different locations, two from a creek and one from the outlet of a thermal complex, were monitored at four time points. Physicochemical and microbiological characterization of each point was conducted, as well as a search for parasites and amebae. Parasites were identified through optical microscopy observations and free-living amebae (FLA) were isolated by spiking in Petri dishes followed by subsequent molecular identification. Water samples from the outlet of the thermal complex showed different physicochemical characteristics from those of the creek. Bacterial indicators of contamination were detected at all points; however, the creek water had a significantly higher concentration of Pseudomonas sp. Sporadically, creek samples exhibited Ascaris spp. eggs, Giardia sp. cysts, and ancylostomid eggs. The presence of FLA was observed in all samples, 15 of which were isolated and identified as Acanthamoeba sp., mostly belonging to the T4 genotype. Parasite surveillance in recreational aquatic environments is an important complement to traditional microbial indicators for assessing water quality. The identified parasites represent a potential health risk for people using these environments.

Potential of Bioremediation and PGP Traits in Streptomyces as Strategies for Bio-Reclamation of Salt-Affected Soils for Agriculture.

Environmental limitations influence food production and distribution, adding up to global problems like world hunger. Conditions caused by climate change require global efforts to be improved, but others like soil degradation demand local management. For many years, saline soils were not a problem; indeed, natural salinity shaped different biomes around the world. However, overall saline soils present adverse conditions for plant growth, which then translate into limitations for agriculture. Shortage on the surface of productive land, either due to depletion of arable land or to soil degradation, represents a threat to the growing worldwide population. Hence, the need to use degraded land leads scientists to think of recovery alternatives. In the case of salt-affected soils (naturally occurring or human-made), which are traditionally washed or amended with calcium salts, bio-reclamation via microbiome presents itself as an innovative and environmentally friendly option. Due to their low pathogenicity, endurance to adverse environmental conditions, and production of a wide variety of secondary metabolic compounds, members of the genus Streptomyces are good candidates for bio-reclamation of salt-affected soils. Thus, plant growth promotion and soil bioremediation strategies combine to overcome biotic and abiotic stressors, providing green management options for agriculture in the near future.

Construction of a combined soil quality indicator to assess the effect of glyphosate application.

Although the use of agrochemicals allowed increasing the crops productivity, in many cases led to soil deterioration. In this study, eight composite samples from different soils of two locations (San Martín and Anta) in Salta, Argentina, were collected and analyzed. All the samples were from loamy Entisols (0-20 cm depth) under reduced tillage without and with direct spray application of glyphosate. Twenty six variables were determined (physical, chemical, and biological soil quality indicators). From them, those of higher specificity and sensitivity to changes following glyphosate application were identified by a stepwise reduction of variables aided by statistical analysis. Samples were grouped regarding location and application of glyphosate, to identify differential effects upon variables, and glyphosate sensitive variables were selected by discarding those influenced by other factors. Thence, they were used to compose a first approximation to a combined soil quality indicator (CSQI) to assess the effect of glyphosate use in agriculture upon the soil. Overall, the set of physical variables showed the same discriminating structure as the biological set. Finally, two biological, two chemical, and two physical indicators resulted as the most specific to quality variations by the application of the herbicide, being the most sensitive the microbial biomass carbon and the (Aminomethyl)phosphonic acid concentration in soil. When these two were considered into a CSQI, it was possible to discriminate samples with the application of glyphosate (lower quality) from those without application (higher quality). To the best of our knowledge, this is the first attempt to propose a CSQI that could play an important role to prevent degradation in soils subjected to glyphosate application, as it could aid in the early detection of soil quality loss. This would provide to land managers a decision tool to let the land rest from glyphosate application, to ensure sustainable practices in agriculture.

Environmental hepatitis E virus detection supported by serological evidence in the northwest of Argentina.

Background: Hepatitis E virus (HEV) is an emergent cause of acute hepatitis worldwide. Water contamination is a possible source of viral infection. In South America, particularly in Argentina, little is known about environmental HEV circulation, including recreational water. The aim of this work was to provide evidence of current environmental and human circulation of HEV in northern Argentina. Methods: Molecular detection of HEV in water samples from the Arias-Arenales River in the city of Salta by nested polymerase chain reaction (ORF2 region) and anti-HEV immunoglobulin G (IgG) and IgM detection in the general population by enzyme-linked immunosorbent assay was carried out. Results: HEV RNA was detected in 1.6% (3/189) of the environmental samples. All sequences belonged to HEV genotype 3 and were very similar to those previously detected in the country. The prevalence of IgG anti-HEV was 9% (13/143) and three samples were positive for specific IgM. Conclusions: Circulation of HEV in the northwest of Argentina was demonstrated for the first time, showing viral presence in environmental samples and infections in people who attended health care centres for routine control. These findings show that recreational waters are a possible source of virus and highlight the need to carry out HEV detection when a case of hepatitis occurs.

Development of a relative risk model for drinking water regulation and design recommendations for a peri urban region of Argentina.

Argentina is a developing Latin American nation that has an aim of achieving the United Nations Millennium Development Goals for potable water supplies. Their current regulations however, limit the continued development of improved potable water quality and infrastructure from a microbiological viewpoint. This is since the current regulations are focused solely to pathogenic Eschericia coli (E. coli), Pseudomonas aeruginosa (P. aeruginosa) and fecal indicators. Regions of lower socioeconomic status such as peri-urban areas are particularly at risk due to lessened financial and political ability to influence their environmental quality and infrastructure needs. Therefore, a combined microbiological sampling, analysis and quantitative microbial risk assessment (QMRA) modeling effort were engaged for a peri-urban area of Salta Argentina. Drinking water samples from home taps were analyzed and a QMRA model was developed, results of which were compared against a general 1:10,000 risk level for lack of a current Argentinian standard. This QMRA model was able to demonstrate that the current regulations were being achieved for E. coli but were less than acceptable for P. aeruginosa in some instances. Appropriate health protections are far from acceptable for Giardia for almost all water sources. Untreated water sources were sampled and analyzed then QMRA modeled as well, since a significant number of the community (∼9%) still use them for potable water supplies. For untreated water E. coli risks were near 1:10,000, however, P. aeruginosa and Giardia risks failed to be acceptable in almost all instances. The QMRA model and microbiological analyses demonstrate the need for improved regulatory efforts for the peri-urban area along with improved investment in their water infrastructure.

[Quantification of parasites in aquatic environments in the Province of Salta, Argentina]. / Cuantificación y evaluación de la estacionalidad de elementos parasitarios en ambientes acuáticos recreativos de la provincia de Salta, Argentina.

Microbiological pollution of recreational waters is a major problem for public health as it may transmit waterborne diseases. To assess water quality, current legislation only requires limits for bacterial indicators; however, these organisms do not accurately predict the presence of parasites. Small number of parasites is usually present in water and although they are capable of causing disease, they may not be high enough to be detected. Detection therefore requires water samples to be concentrated. In this work three recreational aquatic environments located in the province of Salta were monitored over one year. For parasite quantification, water samples were collected every three months and concentrated by ultrafiltration. Detection was performed by microscopy. In addition, monthly monitoring was carried out in each aquatic environment: physicochemical variables were measured in situ and bacteriological counts were determined by traditional microbiological techniques. Of 14 parasites identified, at least nine were detected in each aquatic environment sampled. While bacteriological contamination decreased in most cases during winter (76-99%), parasites were present year-round, becoming a continual threat to public health. Thus, we here propose that it is necessary to use specific parasitological indicators to prevent waterborne disease transmission. Our results suggest that Entamoeba would be a suitable indicator as it was found in all environments and showed minimal seasonal variation. The results obtained in this study have epidemiological relevance and will allow decision-makers to propose solutions for water protection in order to care for population health.

The continuum heterogeneous biofilm model with multiple limiting substrate Monod kinetics.

We describe a novel procedure to estimate the net growth rate of biofilms on multiple substrates. The approach is based on diffusion-reaction mass balances for chemical species in a continuum biofilm model with reaction kinetics corresponding to a Double-Monod expression. This analytical model considers a heterogeneous biofilm with variable distributions of biofilm density, activity, and effective diffusivity as a function of depth. We present the procedure to estimate the effectiveness factor analytically and compare the outcome with values obtained by the application of a rigorous numerical computational method using several theoretical examples and a test case. A comparison of the profiles of the effectiveness factor as a function of the Thiele modulus, φ, revealed that the activity of a homogeneous biofilm could be as much as 42% higher than that of a heterogeneous biofilm, under the given conditions. The maximum relative error between numerical and estimated effectiveness factor was 2.03% at φ near 0.7 (corresponding to a normalized Thiele modulus φ* = 1). For φ < 0.3 or φ > 1.4, the relative error was less than 0.5%. A biofilm containing aerobic ammonium oxidizers was chosen as a test case to illustrate the model's capability. We assumed a continuum heterogeneous biofilm model where the effective diffusivities of oxygen and ammonium change with biofilm position. Calculations were performed for two scenarios; Case I had low dissolved oxygen (DO) concentrations and Case II had high DO concentrations, with a concentration at the biofilm-fluid interface of 10 g O2 /m(3) . For Case II, ammonium was the limiting substrate for a biofilm surface concentration, CNs , ≤13.84 g of N/m(3) . At these concentrations ammonium was limiting inside the biofilm, and oxygen was fully penetrating. Conversely, for CNs > 13.84 g of N/m(3) , oxygen became the limiting substrate inside the biofilm and ammonium was fully penetrating. Finally, a generalized procedure to estimate the effectiveness factor for a system with multiple (n > 2) limiting substrates is given.

Cuantificación y evaluación de la estacionalidad de elementos parasitarios en ambientes acuáticos recreativos de la provincia de Salta, Argentina / Quantification of parasites in aquatic environments in the Province of Salta, Argentina

La contaminación microbiológica de aguas recreativas es un problema preocupante, ya que las personas que las utilizan pueden contraer enfermedades que podrían afectar su bienestar general. Para evaluar la calidad del agua, las legislaciones existentes solo establecen límites de indicadores bacterianos, los cuales no predicen con exactitud la presencia de parásitos. Además, la cantidad de parásitos presentes en el agua, aunque suficiente para producir enfermedad, suele ser pequeña, por lo que, se necesita una etapa previa de concentración para poder detectarlos. En este trabajo se monitorearon trimestralmente durante un año tres ambientes acuáticos de usos recreativos de la provincia de Salta, realizando la concentración de las muestras y la posterior preparación para la búsqueda de elementos parasitarios por microscopía. Adicionalmente, en cada ambiente se midieron mensualmente variables fisicoquímicas in situ y variables bacteriológicas por técnicas microbiológicas tradicionales. En cada ambiente se encontraron como mínimo 9 de los 14 parásitos detectados en conjunto. La presencia de los elementos parasitarios no presentó correlación con indicadores bacterianos en ningún ambiente ni en ninguna de las estaciones (p > 0,05). Mientras que en invierno la contaminación bacteriológica disminuyó entre un 76 % y un 99 %, los elementos parasitarios no presentaron disminución estacional. Los resultados permiten sugerir al género Entamoeba como indicador anual de contaminación parasitaria, ya que este fue encontrado en todos los ambientes con mínimas variaciones estacionales. Estos resultados poseen relevancia epidemiológica, dado que permitirán a los tomadores de decisiones proponer medidas para mejorar el bienestar de la población.

Microbiological pollution of recreational waters is a major problem for public health as it may transmit waterborne diseases. To assess water quality, current legislation only requires limits for bacterial indicators; however, these organisms do not accurately predict the presence of parasites. Small number of parasites is usually present in water and although they are capable of causing disease, they may not be high enough to be detected. Detection therefore requires water samples to be concentrated. In this work three recreational aquatic environments located in the province of Salta were monitored over one year. For parasite quantification, water samples were collected every three months and concentrated by ultrafiltration. Detection was performed by microscopy. In addition, monthly monitoring was carried out in each aquatic environment: physicochemical variables were measured in situ and bacteriological counts were determined by traditional microbiological techniques. Of 14 parasites identified, at least nine were detected in each aquatic environment sampled. While bacteriological contamination decreased in most cases during winter (76-99%), parasites were present year-round, becoming a continual threat to public health. Thus, we here propose that it is necessary to use specific parasitological indicators to prevent waterborne disease transmission. Our results suggest that Entamoeba would be a suitable indicator as it was found in all environments and showed minimal seasonal variation. The results obtained in this study have epidemiological relevance and will allow decision-makers to propose solutions for water protection in order to care for population health.

Cuantificación y evaluación de la estacionalidad de elementos parasitarios en ambientes acuáticos recreativos de la provincia de Salta, Argentina / Quantification of parasites in aquatic environments in the Province of Salta, Argentina

La contaminación microbiológica de aguas recreativas es un problema preocupante, ya que las personas que las utilizan pueden contraer enfermedades que podrían afectar su bienestar general. Para evaluar la calidad del agua, las legislaciones existentes solo establecen límites de indicadores bacterianos, los cuales no predicen con exactitud la presencia de parásitos. Además, la cantidad de parásitos presentes en el agua, aunque suficiente para producir enfermedad, suele ser pequeña, por lo que, se necesita una etapa previa de concentración para poder detectarlos. En este trabajo se monitorearon trimestralmente durante un año tres ambientes acuáticos de usos recreativos de la provincia de Salta, realizando la concentración de las muestras y la posterior preparación para la búsqueda de elementos parasitarios por microscopía. Adicionalmente, en cada ambiente se midieron mensualmente variables fisicoquímicas in situ y variables bacteriológicas por técnicas microbiológicas tradicionales. En cada ambiente se encontraron como mínimo 9 de los 14 parásitos detectados en conjunto. La presencia de los elementos parasitarios no presentó correlación con indicadores bacterianos en ningún ambiente ni en ninguna de las estaciones (p > 0,05). Mientras que en invierno la contaminación bacteriológica disminuyó entre un 76 % y un 99 %, los elementos parasitarios no presentaron disminución estacional. Los resultados permiten sugerir al género Entamoeba como indicador anual de contaminación parasitaria, ya que este fue encontrado en todos los ambientes con mínimas variaciones estacionales. Estos resultados poseen relevancia epidemiológica, dado que permitirán a los tomadores de decisiones proponer medidas para mejorar el bienestar de la población.(AU)

Microbiological pollution of recreational waters is a major problem for public health as it may transmit waterborne diseases. To assess water quality, current legislation only requires limits for bacterial indicators; however, these organisms do not accurately predict the presence of parasites. Small number of parasites is usually present in water and although they are capable of causing disease, they may not be high enough to be detected. Detection therefore requires water samples to be concentrated. In this work three recreational aquatic environments located in the province of Salta were monitored over one year. For parasite quantification, water samples were collected every three months and concentrated by ultrafiltration. Detection was performed by microscopy. In addition, monthly monitoring was carried out in each aquatic environment: physicochemical variables were measured in situ and bacteriological counts were determined by traditional microbiological techniques. Of 14 parasites identified, at least nine were detected in each aquatic environment sampled. While bacteriological contamination decreased in most cases during winter (76-99%), parasites were present year-round, becoming a continual threat to public health. Thus, we here propose that it is necessary to use specific parasitological indicators to prevent waterborne disease transmission. Our results suggest that Entamoeba would be a suitable indicator as it was found in all environments and showed minimal seasonal variation. The results obtained in this study have epidemiological relevance and will allow decision-makers to propose solutions for water protection in order to care for population health.(AU)

Cuantificación y evaluación de la estacionalidad de elementos parasitarios en ambientes acuáticos recreativos de la provincia de Salta, Argentina. / [Quantification of parasites in aquatic environments in the Province of Salta, Argentina].

Microbiological pollution of recreational waters is a major problem for public health as it may transmit waterborne diseases. To assess water quality, current legislation only requires limits for bacterial indicators; however, these organisms do not accurately predict the presence of parasites. Small number of parasites is usually present in water and although they are capable of causing disease, they may not be high enough to be detected. Detection therefore requires water samples to be concentrated. In this work three recreational aquatic environments located in the province of Salta were monitored over one year. For parasite quantification, water samples were collected every three months and concentrated by ultrafiltration. Detection was performed by microscopy. In addition, monthly monitoring was carried out in each aquatic environment: physicochemical variables were measured in situ and bacteriological counts were determined by traditional microbiological techniques. Of 14 parasites identified, at least nine were detected in each aquatic environment sampled. While bacteriological contamination decreased in most cases during winter (76-99

), parasites were present year-round, becoming a continual threat to public health. Thus, we here propose that it is necessary to use specific parasitological indicators to prevent waterborne disease transmission. Our results suggest that Entamoeba would be a suitable indicator as it was found in all environments and showed minimal seasonal variation. The results obtained in this study have epidemiological relevance and will allow decision-makers to propose solutions for water protection in order to care for population health.

[Intestinal parasitoses in Argentina: major causal agents found in the population and in the environment]. / Parasitosis intestinales en Argentina: principales agentes causales encontrados en la población y en el ambiente.

Intestinal parasitic diseases are widely spread in the world, with the highest prevalence in developing countries. Children are mainly affected, showing a decrease in physical and mental development, as well as the expected manifestations of the disease. This situation can be greatly enhanced in children with poor nutritional status. The World Health Organization considers intestinal parasitic diseases a major cause of morbidity, closely linked to poverty and poor personal hygiene, inappropriate handling of raw food, lack of sanitation, lack of potable water supply, and environmental fecal contamination. Some parasitic diseases are cosmopolitan while others have variable geographic distribution, due to different factors such as the presence of exclusive intermediate hosts. In the past few years, globalization allowed the spread of certain parasites from endemic to non-endemic regions. Even though people's customs influence on the frequency of certain parasites, environmental conditions are a determinant factor for parasite survival. In our country, due to the variety of soils and climatic conditions, several causative agents of these parasitoses can be found. The aim of this work was to review the literature on the intestinal parasitic agents found in Argentina in human fecal samples and its environment, as parasitic contamination constitutes a direct indicator of the infection risk by intestinal parasites.

Parasitosis intestinales en Argentina: principales agentes causales encontrados en la población y en el ambiente / Intestinal parasitoses in Argentina: Major causal agents found in the population and in the environment

Las parasitosis intestinales se encuentran ampliamente distribuidas en el mundo, con mayor prevalencia en los países en desarrollo. Principalmente afectan a los niños, en los que además provocan disminución del desarrollo físico y mental, situación que puede potenciarse enormemente cuando se suma a un estado nutricional deficiente. La Organización Mundial de la Salud las considera una de las principales causas de morbilidad, estrechamente ligada a la pobreza y relacionada con inadecuada higiene personal, incorrecta manipulación de los alimentos crudos, falta de servicios sanitarios, falta de provisión de agua potable y contaminación fecal del ambiente. Algunas enfermedades parasitarias se vinculan con condiciones de transmisión que existen universalmente, por lo que son cosmopolitas, mientras que otras tienen distribución geográfica variable. En los últimos años, debido a la globalización, el movimiento de personas de zonas endémicas a regiones no endémicas ha permitido la diseminación de ciertas parasitosis. Y aunque también influyen en la frecuencia de algunas de estas enfermedades las costumbres de los pueblos, las condiciones ambientales son un factor determinante para la supervivencia de los parásitos. En nuestro país, debido a la diversidad de suelos y condiciones climáticas que existen, es posible hallar variedad de agentes causales de estas parasitosis. El objetivo de este trabajo fue realizar una revisión bibliográfica de los agentes parasitarios causantes de enfermedades entéricas encontrados en la República Argentina, tanto en materia fecal de personas como en el ambiente, ya que la contaminación parasitaria de este último constituye un indicador directo del riesgo de infección por parásitos intestinales.

Intestinal parasitic diseases are widely spread in the world, with the highest prevalence in developing countries. Children are mainly affected, showing a decrease in physical and mental development, as well as the expected manifestations of the disease. This situation can be greatly enhanced in children with poor nutritional status. The World Health Organization considers intestinal parasitic diseases a major cause of morbidity, closely linked to poverty and poor personal hygiene, inappropriate handling of raw food, lack of sanitation, lack of potable water supply, and environmental fecal contamination. Some parasitic diseases are cosmopolitan while others have variable geographic distribution, due to different factors such as the presence of exclusive intermediate hosts. In the past few years, globalization allowed the spread of certain parasites from endemic to non-endemic regions. Even though people's customs influence on the frequency of certain parasites, environmental conditions are a determinant factor for parasite survival. In our country, due to the variety of soils and climatic conditions, several causative agents of these parasitoses can be found. The aim of this work was to review the literature on the intestinal parasitic agents found in Argentina in human fecal samples and its environment, as parasitic contamination constitutes a direct indicator of the infection risk by intestinal parasites.

Parasitosis intestinales en Argentina: principales agentes causales encontrados en la población y en el ambiente / Intestinal parasitoses in Argentina: Major causal agents found in the population and in the environment

Las parasitosis intestinales se encuentran ampliamente distribuidas en el mundo, con mayor prevalencia en los países en desarrollo. Principalmente afectan a los niños, en los que además provocan disminución del desarrollo físico y mental, situación que puede potenciarse enormemente cuando se suma a un estado nutricional deficiente. La Organización Mundial de la Salud las considera una de las principales causas de morbilidad, estrechamente ligada a la pobreza y relacionada con inadecuada higiene personal, incorrecta manipulación de los alimentos crudos, falta de servicios sanitarios, falta de provisión de agua potable y contaminación fecal del ambiente. Algunas enfermedades parasitarias se vinculan con condiciones de transmisión que existen universalmente, por lo que son cosmopolitas, mientras que otras tienen distribución geográfica variable. En los últimos años, debido a la globalización, el movimiento de personas de zonas endémicas a regiones no endémicas ha permitido la diseminación de ciertas parasitosis. Y aunque también influyen en la frecuencia de algunas de estas enfermedades las costumbres de los pueblos, las condiciones ambientales son un factor determinante para la supervivencia de los parásitos. En nuestro país, debido a la diversidad de suelos y condiciones climáticas que existen, es posible hallar variedad de agentes causales de estas parasitosis. El objetivo de este trabajo fue realizar una revisión bibliográfica de los agentes parasitarios causantes de enfermedades entéricas encontrados en la República Argentina, tanto en materia fecal de personas como en el ambiente, ya que la contaminación parasitaria de este último constituye un indicador directo del riesgo de infección por parásitos intestinales.(AU)

Intestinal parasitic diseases are widely spread in the world, with the highest prevalence in developing countries. Children are mainly affected, showing a decrease in physical and mental development, as well as the expected manifestations of the disease. This situation can be greatly enhanced in children with poor nutritional status. The World Health Organization considers intestinal parasitic diseases a major cause of morbidity, closely linked to poverty and poor personal hygiene, inappropriate handling of raw food, lack of sanitation, lack of potable water supply, and environmental fecal contamination. Some parasitic diseases are cosmopolitan while others have variable geographic distribution, due to different factors such as the presence of exclusive intermediate hosts. In the past few years, globalization allowed the spread of certain parasites from endemic to non-endemic regions. Even though peoples customs influence on the frequency of certain parasites, environmental conditions are a determinant factor for parasite survival. In our country, due to the variety of soils and climatic conditions, several causative agents of these parasitoses can be found. The aim of this work was to review the literature on the intestinal parasitic agents found in Argentina in human fecal samples and its environment, as parasitic contamination constitutes a direct indicator of the infection risk by intestinal parasites.(AU)

Increasing capacity for environmental engineering in Salta, Argentina.

BACKGROUND: The Fogarty International Center (FIC) of the United States National Institutes of Health includes the International Training and Research in Environmental and Occupational Health (ITREOH) Program. The "International Training Program in Environmental Toxicology and Public Health" Center, funded in 2002 is based at the University of California, Davis, and is part of the ITREOH group of Centers. It has major efforts focused at the public universities in Montevideo, Uruguay, and Salta, Argentina. RESULTS: Training and research efforts in Salta begun in 2005 in the College of Engineering. A donated used real-time PCR machine was the starting point and the initial FIC support was instrumental to face other problems including physical space, research projects and grants, trainees, training, networking, and distractions/opportunities in order to develop local capacities in Environmental Engineering using modern methodology. After 6 years of successful work, the Salta center has become a reference Center in the field, and is still growing and consolidating. CONCLUSIONS: This program has had a significant impact locally and regionally. The model used in Argentina could be easily adapted to other fields or types of projects in Argentina and in other developing countries.

Parasitosis intestinales en Argentina: principales agentes causales encontrados en la población y en el ambiente. / [Intestinal parasitoses in Argentina: major causal agents found in the population and in the environment].

Intestinal parasitic diseases are widely spread in the world, with the highest prevalence in developing countries. Children are mainly affected, showing a decrease in physical and mental development, as well as the expected manifestations of the disease. This situation can be greatly enhanced in children with poor nutritional status. The World Health Organization considers intestinal parasitic diseases a major cause of morbidity, closely linked to poverty and poor personal hygiene, inappropriate handling of raw food, lack of sanitation, lack of potable water supply, and environmental fecal contamination. Some parasitic diseases are cosmopolitan while others have variable geographic distribution, due to different factors such as the presence of exclusive intermediate hosts. In the past few years, globalization allowed the spread of certain parasites from endemic to non-endemic regions. Even though peoples customs influence on the frequency of certain parasites, environmental conditions are a determinant factor for parasite survival. In our country, due to the variety of soils and climatic conditions, several causative agents of these parasitoses can be found. The aim of this work was to review the literature on the intestinal parasitic agents found in Argentina in human fecal samples and its environment, as parasitic contamination constitutes a direct indicator of the infection risk by intestinal parasites.

[Comparison of nucleic acid extraction efficiency using different commercial kits and qPCR. Effect of inhibitors]. / Comparación de la eficiencia de extracción de ácidos nucleicos utilizando distintos kits comerciales y empleando la qPCR. Efecto de las sustancias inhibidoras.

The detection of specific nucleic acid (NA) sequences by PCR has revolutionized the biological and medical sciences. Real-time PCR (qPCR) opened up the possibility of obtaining quantitative results. NA extraction is a decisive step prior to qPCR since it may produce either the removal or co-extraction of inhibitory substances of the enzymatic reaction, which in turn affects the amplification efficiency. In the present work we compared the commercial NA extraction kits from Qiagen, Invitrogen and Macherey-Nagel, which were used to extract DNA from mice blood artificially infected with Trypanosoma cruzi and PP7 RNA, Pseudomonas aeruginosa bacteriophage, in spiked aqueous matrices. NA recovery efficiency in samples without inhibitors was similar for the three extraction kits. However, the Invitrogen kit was the only one that remained unaffected in the presence of inhibitors in the samples.

Environmental surveillance of norovirus in Argentina revealed distinct viral diversity patterns, seasonality and spatio-temporal diffusion processes.

Norovirus (NoV) contamination was evaluated in five rivers of Argentina between 2005 and 2011. NoV was present in all sampled rivers, with distinct NoV patterns in waters impacted by different-sized communities. In rivers affected by medium-sized populations (Salta and Córdoba cities) only one or two genotypes were present, GII.4 being the main one, with winter seasonality. In contrast, in the much more heavily populated area of Buenos Aires city the prevalent GII.4 was accompanied by several additional genotypes (GII.4, GII.b, GII.2, GII.7, GII.17, GII.e and GII.g) and one ungenotyped GII NoV, with no clear seasonality. GII.4 2006b was the main variant detected (60.9%). Phylogeographic and phylodynamic analyses performed in region D of the VP1 gene showed a most recent common ancestor in 2002 and a substitution rate of 3.7×10(-3) substitutions per site per year (HPD95%=2.3×10(-3)-5.2×10(-3)) for this variant still involving a significant population size with a slight decrease since 2008. The spatio-temporal diffusion analysis proposed Europe as an intermediate path between the American Continent and the rest of the World for NoV dissemination. Given the importance of NoV as a cause of epidemic gastroenteritis and the likelihood of its environmental transmission, the results of this work should increase public and institutional awareness of the health risk involved in sewage discharges into the environment. Environmental surveillance of enteric viruses could be a very useful tool not only to prevent waterborne outbreaks, but also to describe the epidemiology of the viruses. The detailed analysis of the viral genomes disposed into the environment contributed to the characterization of the dissemination, diversity and seasonality of NoV in its natural host population. In future studies, environmental surveillance and molecular analysis should be complemented with a quantitative viral risk assessment for estimating the disease burden from viruses in the environment.

The impact of point source pollution on shallow groundwater used for human consumption in a threshold country.

Many developing and threshold countries rely on shallow groundwater wells for their water supply whilst pit latrines are used for sanitation. We employed a unified strategy involving satellite images and environmental monitoring of 16 physico-chemical and microbiological water quality parameters to identify significant land uses that can lead to unacceptable deterioration of source water, in a region with a subtropical climate and seasonally restricted torrential rainfall in Northern Argentina. Agricultural and non-agricultural sources of nitrate were illustrated in satellite images and used to assess the organic load discharged. The estimated human organic load per year was 28.5 BOD(5) tons and the N load was 7.5 tons, while for poultry farms it was 9940-BOD(5) tons and 1037-N tons, respectively. Concentrations of nitrates and organics were significantly different between seasons in well water (p values of 0.026 and 0.039, respectively). The onset of the wet season had an extraordinarily negative impact on well water due in part to the high permeability of soils made up of fine gravels and coarse sand. Discriminant analysis showed that land uses had a pronounced seasonal influence on nitrates and introduced additional microbial contamination, causing nitrification and denitrification in shallow groundwater. P-well was highly impacted by a poultry farm while S-well was affected by anthropogenic pollution and background load, as revealed by Principal Component Analysis. The application of microbial source tracking techniques is recommended to corroborate local sources of human versus animal origin.

Continuum heterogeneous biofilm model--a simple and accurate method for effectiveness factor determination.

We present a novel analytical approach to describe biofilm processes considering continuum variation of both biofilm density and substrate effective diffusivity. A simple perturbation and matching technique was used to quantify biofilm activity using the steady-state diffusion-reaction equation with continuum variable substrate effective diffusivity and biofilm density, along the coordinate normal to the biofilm surface. The procedure allows prediction of an effectiveness factor, η, defined as the ratio between the observed rate of substrate utilization (reaction rate with diffusion resistance) and the rate of substrate utilization without diffusion limitation. Main assumptions are that (i) the biofilm is a continuum, (ii) substrate is transferred by diffusion only and is consumed only by microorganisms at a rate according to Monod kinetics, (iii) biofilm density and substrate effective diffusivity change in the x direction, (iv) the substrate concentration above the biofilm surface is known, and (v) the substratum is impermeable. With this approach one can evaluate, in a fast and efficient way, the effect of different parameters that characterize a heterogeneous biofilm and the kinetics of the rate of substrate consumption on the behavior of the biological system. Based on a comparison of η profiles the activity of a homogeneous biofilm could be as much as 47.8% higher than that of a heterogeneous biofilm, under the given conditions. A comparison of η values estimated for first order kinetics and η values obtained by numerical techniques showed a maximum deviation of 1.75% in a narrow range of modified Thiele modulus values. When external mass transfer resistance, is also considered, a global effectiveness factor, η(0) , can be calculated. The main advantage of the approach lies in the analytical expression for the calculation of the intrinsic effectiveness factor η and its implementation in a computer program. For the test cases studied convergence was achieved quickly after four or five iterations. Therefore, the simulation and scale-up of heterogeneous biofilm reactors can be easily carried out.

Desarrollo de una PCR en tiempo real para la cuantificación de leishmania SP en muestras de pacientes con leishmaniasis tegumentaria americana / Development of a real time PCR assay for the quantification of leishmania SP in samples from patients with american tegumentary leishmaniasis

INTRODUCCION: La leishmaniasis tegumentaria americana (LTA) es una enfermedad endémica reemergente en la provincia de Salta. Los recursos terapéuticos disponibles presentan serias limitaciones. Se han detectado numerosos casos de fallas terapéuticas debido a que el criterio de curación se basa en la evolución clínica de las lesiones.OBJETIVO: A fin de contar con un sistema adecuado para monitorear la enfermedad, se propuso optimizar una PCR en tiempo real (RT-PCR) basada en el uso de un agente intercalante y oligonucleótidos que amplifican secuencias del ADN del kinetoplasto (KADN), directamente de muestras de raspados de lesiones (en pacientes con LTA) contenidas en buffer TE (Tris-EDTA), sin extracción de ADN.METODOS: Para obtener una curva estándar (CE) se realizaron diluciones seriadas de parásitos (p) de cepas de referencia de especies que circulan en la zona. También se compararon 3 métodos de procesamiento de muestras (PM): Buffer de lisis, Insta-GeneTM Matrix (BIO-RAD) y TE. Luego se analizaron negativos para evaluar la especificidad y sensibilidad del sistema. Estas muestras provenían de raspados de lesiones cutáneas o mucocutáneas, tomados con palillos de madera en 300 μl TE.RESULTADOS: El límite de detección fue de 0,001 p/300 μl TE. La CE construida a partir de una cepa de Leishmania Viannia braziliensis mostró una pendiente de -3,40, eficiencia de amplificación de 96,66%, coeficiente de Pearson (R2) de 0,997 e intersección en la ordenada de 44,079. Al comparar los PM, el método de buffer TE fue el más eficiente. La RT-PCR desarrollada mostró un 100% de especificidad frente a muestras controles negativos y un 100% de sensibilidad frente a controles positivos.CONCLUSIONES: El sistema analizado es altamente sensible y permite detectar parásitos de Leishmania sp directamente de muestras clínicas provenientes de raspados de lesiones.

INTRODUCTION: The american tegumentary leishmaniasis (ATL) is an endemic, re-emergent disease in the Province of Salta. The therapeutic resources which are available have serious limitations. Numerous treatment failures have been detected due to the fact that the evaluation of chemotherapy is based on the clinical outcome of lesionsOBJECTIVE: In order to find a system for the correct follow-up of the disease, the study aimed at optimized the real time PCR (RT-PCR) based on intercalating agent and primers that amplify kinetoplastic DNA sequences (KDNA), directly on samples from skin lesion scrappings (from patients with ATL) contained in buffer TE, without DNA purification..METHODS: To obtain a stardard curve (SC) serial dilutions of parasites (p) were made (from reference strains of species that circulate in the region). 3 different methods of sample processing (SP) were compared: Lysis buffer, Insta-GeneTM Matrix (BIO-RAD) and TE (Tris-EDTA). The study evaluated the specificity and sensibility of the system by analyzing positive (by conventional PCR) and negative clinical samples. These samples were from cutaneous or mucocutaneous lesion scrapings, taken with toothpicks in 300 μl TE.RESULTS: The detection limit was 0.001 p/300 μl TE. The SC built with a Leishmania Viannia braziliensis strain showed a slope of -3.40, amplification efficiency of 96.66%, Pearson coefficient (R2) of 0.997 and 44.079 x-intersection. When comparing the SP, the buffer TE method was the most efficient one. With respect to positive and negative control samples, this RT-PCR showed a sensitivity and specificity of 100% respectively.CONCLUSIONS: This system is highly sensitive and allows to detect Leishmania sp parasites directly from clinical samples of lesion scrapings.