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1.
J Magn Reson Imaging ; 59(4): 1312-1324, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-37610269

RESUMEN

BACKGROUND: Multiparameter characterization using MR fingerprinting (MRF) can quantify multiple relaxation parameters of intervertebral disc (IVD) simultaneously. These parameters may vary by age and sex. PURPOSE: To investigate age- and sex-related differences in the relaxation parameters of the IVD of the lumbar spine using a multiparameter MRF technique. STUDY TYPE: Prospective. SUBJECTS: 17 healthy subjects (8 male; mean age = 34 ± 10 years, range 20-60 years). FIELD STRENGTH/SEQUENCE: 3D-MRF sequence for simultaneous acquisition of proton density, T1 , T2 , and T1ρ maps at 3.0T. ASSESSMENT: Global mean T1 , T2 , and T1ρ of all lumbar IVDs and mean T1 , T2 , and T1ρ of each individual IVD (L1-L5) were measured. Gray level co-occurrence matrix was used to quantify textural features (median, contrast, correlation, energy, and homogeneity) from T1 , T2 , and T1ρ maps. STATISTICAL TESTS: Spearman rank correlations (R) evaluated the association between age and T1 , T2 , and T1ρ of IVD. Mann-Whitney U-tests evaluated differences between males and females in T1 , T2 , and T1ρ of IVD. Statistical significance was defined as P-value <0.05. RESULTS: There was a significant negative correlation between age and global mean values of all IVDs for T1 (R = -0.637), T2 (R = -0.509), and T1ρ (R = -0.726). For individual IVDs, there was a significant negative correlation between age and mean T1 at all IVD segments (R range = -0.530 to -0.708), between age and mean T2 at L2-L3, L3-L4, and L4-L5 (R range = -0.493 to 0.640), and between age and mean T1ρ at all segments except L1-L2 (R range = -0.632 to -0.763). There were no significant differences between sexes in global mean T1 , T2, and T1ρ (P-value = 0.23-0.76) The texture features with the highest significant correlations with age for all IVDs were global T1ρ mean (R = -0.726), T1 energy (R = -0.681), and T1 contrast (R = 0.709). CONCLUSION: This study showed that the 3D-MRF technique has potential to characterize age-related differences in T1 , T2, or T1ρ of IVD in healthy subjects. LEVEL OF EVIDENCE: 2 TECHNICAL EFFICACY: Stage 1.


Asunto(s)
Degeneración del Disco Intervertebral , Disco Intervertebral , Femenino , Humanos , Masculino , Adulto Joven , Adulto , Persona de Mediana Edad , Degeneración del Disco Intervertebral/diagnóstico por imagen , Estudios Prospectivos , Disco Intervertebral/diagnóstico por imagen , Imagen por Resonancia Magnética/métodos , Vértebras Lumbares/diagnóstico por imagen
2.
NMR Biomed ; 36(11): e4999, 2023 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-37409683

RESUMEN

The objective of the current study was to investigate age- and gender-related differences in lumbar intervertebral disk (IVD) strain with the use of static mechanical loading and continuous three-dimensional (3D) golden-angle radial sparse parallel (GRASP) MRI. A continuous 3D-GRASP stack-of-stars trajectory of the lumbar spine was performed on a 3-T scanner with static mechanical loading. Compressed sensing reconstruction, motion deformation maps, and Lagrangian strain maps during loading and recovery in the X-, Y-, and Z-directions were calculated for segmented IVD segments from L1/L2 to L5/S1. Mean IVD height was measured at rest. Spearman coefficients were used to evaluate the associations between age and global IVD height and global IVD strain. Mann-Whitney tests were used to compare global IVD height and global IVD strain in males and females. The prospective study enrolled 20 healthy human volunteers (10 males, 10 females; age 34.6 ± 11.4 [mean ± SD], range 22-56 years). Significant increases in compressive strain were observed with age, as evidenced by negative correlations between age and global IVD strain during loading (ρ = -0.76, p = 0.0046) and recovery (ρ = -0.68, p = 0.0251) in the loading X-direction. There was no significant correlation between age and global IVD height, global IVD strain during loading and recovery in the Y-direction, and global IVD strain during loading and recovery in the Z-direction. There were no significant differences between males and females in global IVD height and global IVD strain during loading and recovery in the X-, Y-, and Z-directions. It was concluded that our study demonstrated the significant role aging plays in internal dynamic strains in the lumbar IVD during loading and recovery. Older healthy individuals have reduced IVD stiffness and greater IVD compression during static mechanical loading of the lumbar spine. The GRASP-MRI technique demonstrates the feasibility to identify changes in IVD mechanical properties with early IVD degeneration due to aging.


Asunto(s)
Degeneración del Disco Intervertebral , Disco Intervertebral , Masculino , Femenino , Humanos , Adulto Joven , Adulto , Persona de Mediana Edad , Factores Sexuales , Estudios Prospectivos , Disco Intervertebral/diagnóstico por imagen , Degeneración del Disco Intervertebral/diagnóstico por imagen , Degeneración del Disco Intervertebral/patología , Imagen por Resonancia Magnética/métodos , Vértebras Lumbares/diagnóstico por imagen , Vértebras Lumbares/patología
3.
J Magn Reson Imaging ; 58(1): 44-60, 2023 07.
Artículo en Inglés | MEDLINE | ID: mdl-37010113

RESUMEN

Osteoarthritis (OA) is a widely occurring degenerative joint disease that is severely debilitating and causes significant socioeconomic burdens to society. Magnetic resonance imaging (MRI) is the preferred imaging modality for the morphological evaluation of cartilage due to its excellent soft tissue contrast and high spatial resolution. However, its utilization typically involves subjective qualitative assessment of cartilage. Compositional MRI, which refers to the quantitative characterization of cartilage using a variety of MRI methods, can provide important information regarding underlying compositional and ultrastructural changes that occur during early OA. Cartilage compositional MRI could serve as early imaging biomarkers for the objective evaluation of cartilage and help drive diagnostics, disease characterization, and response to novel therapies. This review will summarize current and ongoing state-of-the-art cartilage compositional MRI techniques and highlight emerging methods for cartilage compositional MRI including MR fingerprinting, compressed sensing, multiexponential relaxometry, improved and robust radio-frequency pulse sequences, and deep learning-based acquisition, reconstruction, and segmentation. The review will also briefly discuss the current challenges and future directions for adopting these emerging cartilage compositional MRI techniques for use in clinical practice and translational OA research studies. EVIDENCE LEVEL: 2 TECHNICAL EFFICACY: Stage 2.


Asunto(s)
Cartílago Articular , Sistema Musculoesquelético , Osteoartritis de la Rodilla , Humanos , Cartílago Articular/diagnóstico por imagen , Cartílago Articular/patología , Imagen por Resonancia Magnética/métodos , Estudios Longitudinales , Osteoartritis de la Rodilla/patología
4.
Res Sq ; 2023 Mar 24.
Artículo en Inglés | MEDLINE | ID: mdl-36993561

RESUMEN

The purpose of this study was to develop and test a 3D multi-parameter MR fingerprinting (MRF) method for brain imaging applications. The subject cohort included 5 healthy volunteers, repeatability tests done on 2 healthy volunteers and tested on two multiple sclerosis (MS) patients. A 3D-MRF imaging technique capable of quantifying T1, T2 and T1ρ was used. The imaging sequence was tested in standardized phantoms and 3D-MRF brain imaging with multiple shots (1, 2 and 4) in healthy human volunteers and MS patients. Quantitative parametric maps for T1, T2, T1ρ, were generated. Mean gray matter (GM) and white matter (WM) ROIs were compared for each mapping technique, Bland-Altman plots and intra-class correlation coefficient (ICC) were used to assess repeatability and Student T-tests were used to compare results in MS patients. Standardized phantom studies demonstrated excellent agreement with reference T1/T2/T1ρ mapping techniques. This study demonstrates that the 3D-MRF technique is able to simultaneously quantify T1, T2 and T1ρ for tissue property characterization in a clinically feasible scan time. This multi-parametric approach offers increased potential to detect and differentiate brain lesions and to better test imaging biomarker hypotheses for several neurological diseases, including MS.

5.
Magn Reson Med ; 89(1): 205-216, 2023 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-36129110

RESUMEN

PURPOSE: The goal of this study was to apply a fast data-driven optimization algorithm, called bias-accelerated subset selection, for MR brain T1ρ mapping to generate optimized sampling patterns (SPs) for compressed sensing reconstruction of brain 3D-T1ρ MRI. METHODS: Five healthy volunteers were recruited, and fully sampled Cartesian 3D-T1ρ MRIs were obtained. Variable density (VD) and Poisson disc (PD) undersampling was used as the input to SP optimization process. The reconstruction used 3 compressed sensing methods: spatiotemporal finite differences, low-rank plus sparse with spatial finite differences, and low rank. The performance of images and T1ρ maps using PD-SP and VD-SP and their optimized sampling patterns (PD-OSP and VD-OSP) were compared to the fully sampled reference using normalized root mean square error (NRMSE). RESULTS: The VD-OSP with spatiotemporal finite differences reconstruction (NRMSE = 0.078) and the PD-OSP with spatiotemporal finite differences reconstruction (NRMSE = 0.079) at the highest acceleration factors (AF = 30) showed the largest improvement compared to the respective nonoptimized SPs (VD NRMSE = 0.087 and PD NRMSE = 0.149). Prospective undersampling was tested at AF = 4, with VD-OSP NRMSE = 0.057 versus PD-OSP NRMSE = 0.060, with optimized sampling performing better that input PD or VD sampling. For brain T1ρ mapping, the VD-OSP with low rank reconstruction for AFs <10 and VD-OSP with spatiotemporal finite differences for AFs >10 perform better. CONCLUSIONS: The study demonstrated that the appropriate use of data-driven optimized sampling and suitable compressed sensing reconstruction technique can be employed to potentially accelerate 3D T1ρ mapping for brain imaging applications.


Asunto(s)
Algoritmos , Imagen por Resonancia Magnética , Humanos , Estudios Prospectivos , Imagen por Resonancia Magnética/métodos , Encéfalo/diagnóstico por imagen , Aceleración , Procesamiento de Imagen Asistido por Computador/métodos
6.
Sci Rep ; 12(1): 16829, 2022 10 07.
Artículo en Inglés | MEDLINE | ID: mdl-36207361

RESUMEN

Two optimization criteria based on Cramér-Rao Bounds are compared between each other and with non-optimized schedules for T1ρ mapping using synthetic data, model phantoms, and in-vivo knee cartilage. The curve fitting is done on complex-valued data using an iterative Nonlinear Least Squares (NLS) approach. The optimization criteria are compared based on the Mean Normalized Absolute Error (MNAE) and variance of the estimated parameters. The optimized spin-lock time (TSL) schedules provided improved results over the non-optimized schedules for all cases that were tested. The simulations showed that optimized schedules can reach the same precision and reduce acquisition times by 16.5 min (42%) for the bi-exponential model, and 6.6 min (22%) for the stretched-exponential model. In the model phantoms experiments, the bi-exponential MNAE was reduced from 0.47 to 0.36, while stretched-exponential from 0.28 to 0.20 with a Modified Cramér-Rao Lower Bound (MCRLB). In-vivo knee cartilage experiments show a reduction in bi-exponential MNAE from 0.47 to 0.31, and stretched-exponential from 0.047 to 0.039. The optimized spin-lock times criteria reduced the error in all cases, being more significant in the synthetic data and model phantoms. The optimized TSL schedules can be either used to improve the quality of parameter maps or reduce scan time.


Asunto(s)
Articulación de la Rodilla , Imagen por Resonancia Magnética , Cartílago , Humanos , Rodilla , Articulación de la Rodilla/diagnóstico por imagen , Imagen por Resonancia Magnética/métodos , Fantasmas de Imagen
7.
Phys Rev E ; 106(1-1): 014150, 2022 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-35974652

RESUMEN

We study the steady states and the coarsening dynamics in a one-dimensional driven nonconserved system modeled by the so-called driven Allen-Cahn equation, which is the standard Allen-Cahn equation with an additional driving force. In particular, we derive equations of motion for the phase boundaries in a phase ordering system obeying this equation using a nearest-neighbor interaction approach. Using the equations of motion we explore kink binary and ternary interactions and analyze how the average domain size scale with respect to time. Further, we employ numerical techniques to perform a bifurcation analysis of the one-period stationary solutions of the equation. We then investigate the linear stability of the two-period solutions and thereby identify and study various coarsening modes.

8.
Clin Lung Cancer ; 23(1): 1-13, 2022 01.
Artículo en Inglés | MEDLINE | ID: mdl-34645581

RESUMEN

Existing approaches for cancer diagnosis are inefficient in the use of diagnostic tissue, and decision-making is often sequential, typically resulting in delayed treatment initiation. Future diagnostic testing needs to be faster and optimize increasingly complex treatment decisions. We envision a future where comprehensive testing is routine. Our approach, termed the "combiome," combines holistic information from the tumor, and the patient's immune system. The combiome model proposed here advocates synchronized up-front testing with a panel of sensitive assays, revealing a more complete understanding of the patient phenotype and improved targeting and sequencing of treatments. Development and eventual adoption of the combiome model for diagnostic testing may provide better outcomes for all cancer patients, but will require significant changes in workflows, technology, regulations, and administration. In this review, we discuss the current and future testing landscape, targeting of personalized treatments, and technological and regulatory advances necessary to achieve the combiome.


Asunto(s)
Neoplasias Pulmonares/diagnóstico , Neoplasias Pulmonares/terapia , Modelos Teóricos , Humanos , Inmunoterapia , Microbiota , Proteogenómica , Resultado del Tratamiento
9.
Sci Rep ; 11(1): 13951, 2021 07 06.
Artículo en Inglés | MEDLINE | ID: mdl-34230600

RESUMEN

Post stroke muscle stiffness is a common problem, which left untreated can lead to disabling muscle contractures. The purpose of this pilot study was to evaluate the feasibility of bi-exponential T1ρ mapping in patients with arm muscle stiffness after stroke and its ability to measure treatment related changes in muscle glycosaminoglycans (GAGs). Five patients with muscle stiffness after stroke and 5 healthy controls were recruited for imaging of the upper arm with 3D-T1ρ mapping. Patients were scanned before and after treatment with hyaluronidase injections, whereas the controls were scanned once. Wilcoxon Mann-Whitney tests compared patients vs. controls and patients pre-treatment vs. post-treatment. With bi-exponential modeling, the long component, T1ρl was significantly longer in the patients (biceps P = 0.01; triceps P = 0.004) compared to controls. There was also a significant difference in the signal fractions of the long and short components (biceps P = 0.03, triceps P = 0.04). The results suggest that muscle stiffness is characterized by increased muscle free water and GAG content. Post-treatment, the T1ρ parameters shifted toward control values. This pilot study demonstrates the application of bi-exponential T1ρ mapping as a marker for GAG content in muscle and as a potential treatment monitoring tool for patients with muscle stiffness after stroke.


Asunto(s)
Glicosaminoglicanos/metabolismo , Imagen por Resonancia Magnética , Músculo Esquelético/metabolismo , Músculo Esquelético/fisiopatología , Accidente Cerebrovascular/diagnóstico por imagen , Accidente Cerebrovascular/fisiopatología , Estudios de Casos y Controles , Femenino , Humanos , Masculino , Persona de Mediana Edad , Modelos Biológicos , Proyectos Piloto , Accidente Cerebrovascular/terapia
10.
Sci Rep ; 11(1): 7412, 2021 04 01.
Artículo en Inglés | MEDLINE | ID: mdl-33795721

RESUMEN

Impaired oxidative metabolism is one of multi-variate factors leading to exercise intolerance in heart failure patients. The purpose of the study was to demonstrate the use of dynamic 31P magnetic resonance spectroscopy (MRS) and 31P magnetic resonance imaging (MRI) techniques to measure PCr resynthesis rate post-exercise as a biomarker for oxidative metabolism in skeletal muscle in HF patients and controls. In this prospective imaging study, we recruited six HF patients and five healthy controls. The imaging protocol included 31P-MRS, spectrally selective 3D turbo spin echo for 31P-MRI, and Dixon multi-echo GRE for fat-water imaging on a 3 T clinical MRI scanner. All the subjects were scanned pre-exercise, during plantar flexion exercise, and post-exercise recovery, with two rounds of exercise for 31P -MRS and 31P-MRI, respectively. Unpaired t-tests were used to compare 31P-MRS and 31P-MRI results between the HF and control cohorts. The results show that PCr resynthesis rate was significantly slower in the HF cohort compared to the controls using 31P-MRS (P = 0.0003) and 31P-MRI (P = 0.0014). 31P-MRI showed significant differences between the cohorts in muscle groups (soleus (P = 0.0018), gastrocnemius lateral (P = 0.0007) and gastrocnemius medial (P = 0.0054)). The results from this study suggest that 31P-MRS/31P-MRI may be used to quantify lower leg muscle oxidative metabolism in HF patients, with 31P-MRI giving an additional advantage of allowing further localization of oxidative metabolism deficits. Upon further validation, these techniques may serve as a potentially useful clinical imaging biomarker for staging and monitoring therapies in HF-patients.


Asunto(s)
Insuficiencia Cardíaca/complicaciones , Pierna/patología , Imagen por Resonancia Magnética/métodos , Espectroscopía de Resonancia Magnética/métodos , Músculo Esquelético/diagnóstico por imagen , Músculo Esquelético/patología , Biomarcadores , Estudios de Casos y Controles , Análisis de Datos , Ejercicio Físico , Femenino , Humanos , Procesamiento de Imagen Asistido por Computador/métodos , Masculino , Tamaño de los Órganos , Pronóstico
11.
J Magn Reson Imaging ; 54(2): 486-496, 2021 08.
Artículo en Inglés | MEDLINE | ID: mdl-33713520

RESUMEN

BACKGROUND: Noninvasive measurement of internal dynamic strain can be potentially useful to characterize spine intervertebral disc (IVD) in the setting of injury or degenerative disease. PURPOSE: To develop and demonstrate a noninvasive technique to quantify three-dimensional (3D) internal dynamic strains in the IVD using a combination of static mechanical loading of the IVD using a magnetic resonance imaging (MRI)-compatible ergometer. STUDY TYPE: Prospective. SUBJECTS: Silicone gel phantom studies were conducted to assess strain variation with load and repeatability. Mechanical testing was done on the phantoms to confirm MR results. Eight healthy human volunteers (four men and four woman, age = 29 ± 5 years) underwent MRI using a rest, static loading, and recovery paradigm. Repeatability tests were conducted in three subjects. FIELD STRENGTH/SEQUENCE: MRI (3 T) with 3D continuous golden-angle radial sparse parallel (GRASP) and compressed sensing (CS) reconstruction. ASSESSMENT: CS reconstruction of the images, motion deformation, and Lagrangian strain maps were calculated for five IVD segments from L1/L2 to L5/S1. STATISTICAL TESTS: Ranges of displacement and strain in each subject and the resulting mean and standard deviation were calculated. Student t-tests were used to calculate changes in strain from loading to recovery. The correlation coefficient (CC) in the repeatability study was calculated. RESULTS: The most compressive strain experienced by the IVD segments under loaded conditions was in the L4/L5 segment (-7.5 ± 2.9%). The change in minimum strain from load to recovery was the most for the L4/L5 segment (-7.5% to -5.0%, P = 0.026) and the least for the L1/L2 segment (-4.4% to -3.9%, P = 0.51). In vivo repeatability in three subjects shows strong correlation between scans in subjects done 6 months apart, with CCs equal to 0.86, 0.94, and 0.94 along principal directions. DATA CONCLUSION: This study shows the feasibility of using static mechanical loading with continuous GRASP-MRI acquisition with CS reconstruction to measure 3D internal dynamic strains in the spine IVD. LEVEL OF EVIDENCE: 2 TECHNICAL EFFICACY STAGE: 1.


Asunto(s)
Degeneración del Disco Intervertebral , Disco Intervertebral , Adulto , Femenino , Humanos , Disco Intervertebral/diagnóstico por imagen , Degeneración del Disco Intervertebral/diagnóstico por imagen , Vértebras Lumbares/diagnóstico por imagen , Región Lumbosacra , Imagen por Resonancia Magnética , Masculino , Estudios Prospectivos , Adulto Joven
12.
Magn Reson Imaging Clin N Am ; 29(1): 117-127, 2021 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-33237012

RESUMEN

Regulatory approval of ultrahigh field (UHF) MR imaging scanners for clinical use has opened new opportunities for musculoskeletal imaging applications. UHF MR imaging has unique advantages in terms of signal-to-noise ratio, contrast-to-noise ratio, spectral resolution, and multinuclear applications, thus providing unique information not available at lower field strengths. But UHF also comes with a set of technical challenges that are yet to be resolved and may not be suitable for all imaging applications. This review focuses on the latest research in musculoskeletal MR imaging applications at UHF including morphologic imaging, T2, T2∗, and T1ρ mapping, chemical exchange saturation transfer, sodium imaging, and phosphorus spectroscopy imaging applications.


Asunto(s)
Imagen por Resonancia Magnética/métodos , Enfermedades Musculoesqueléticas/diagnóstico por imagen , Humanos , Sistema Musculoesquelético/diagnóstico por imagen
13.
J Magn Reson Imaging ; 53(4): 1130-1139, 2021 04.
Artículo en Inglés | MEDLINE | ID: mdl-33190362

RESUMEN

BACKGROUND: 3D-T1ρ mapping is useful to quantify various neurologic disorders, but data are currently time-consuming to acquire. PURPOSE: To compare the performance of five compressed sensing (CS) algorithms-spatiotemporal finite differences (STFD), exponential dictionary (EXP), 3D-wavelet transform (WAV), low-rank (LOW) and low-rank plus sparse model with spatial finite differences (L + S SFD)-for 3D-T1ρ mapping of the human brain with acceleration factors (AFs) of 2, 5, and 10. STUDY TYPE: Retrospective. SUBJECTS: Eight healthy volunteers underwent T1ρ imaging of the whole brain. FIELD STRENGTH/SEQUENCE: The sequence was fully sampled 3D Cartesian ultrafast gradient echo sequence with a customized T1ρ preparation module on a clinical 3T scanner. ASSESSMENT: The fully sampled data was undersampled by factors of 2, 5, and 10 and reconstructed with the five CS algorithms. Image reconstruction quality was evaluated and compared to the SENSE reconstruction of the fully sampled data (reference) and T1ρ estimation errors were assessed as a function of AF. STATISTICAL TESTS: Normalized root mean squared errors (nRMSE) and median normalized absolute deviation (MNAD) errors were calculated to compare image reconstruction errors and T1ρ estimation errors, respectively. Linear regression plots, Bland-Altman plots, and Pearson correlation coefficients (CC) are shown. RESULTS: For image reconstruction quality, at AF = 2, EXP transforms had the lowest mRMSE (1.56%). At higher AF values, STFD performed better, with the smallest errors (3.16% at AF = 5, 4.32% at AF = 10). For whole-brain quantitative T1ρ mapping, at AF = 2, EXP performed best (MNAD error = 1.62%). At higher AF values (AF = 5, 10), the STFD technique had the least errors (2.96% at AF = 5, 4.24% at AF = 10) and the smallest variance from the reference T1ρ estimates. DATA CONCLUSION: This study demonstrates the use of different CS algorithms that may be useful in reducing the scan time required to perform volumetric T1ρ mapping of the brain. LEVEL OF EVIDENCE: 2. TECHNICAL EFFICACY STAGE: 1.


Asunto(s)
Algoritmos , Imagen por Resonancia Magnética , Encéfalo/diagnóstico por imagen , Voluntarios Sanos , Humanos , Procesamiento de Imagen Asistido por Computador , Estudios Retrospectivos
14.
Curr Genomics ; 21(1): 26-33, 2020 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-32655295

RESUMEN

INTRODUCTION: N6-methyladenosine (m6A) is one of the most common post-transcriptional modifications in RNA, which has been related to several biological processes. The accurate prediction of m6A sites from RNA sequences is one of the challenging tasks in computational biology. Several computational methods utilizing machine-learning algorithms have been proposed that accelerate in silico screening of m6A sites, thereby drastically reducing the experimental time and labor costs involved. METHODOLOGY: In this study, we proposed a novel computational predictor termed ERT-m6Apred, for the accurate prediction of m6A sites. To identify the feature encodings with more discriminative capability, we applied a two-step feature selection technique on seven different feature encodings and identified the corresponding optimal feature set. RESULTS: Subsequently, performance comparison of the corresponding optimal feature set-based extremely randomized tree model revealed that Pseudo k-tuple composition encoding, which includes 14 physicochemical properties significantly outperformed other encodings. Moreover, ERT-m6Apred achieved an accuracy of 78.84% during cross-validation analysis, which is comparatively better than recently reported predictors. CONCLUSION: In summary, ERT-m6Apred predicts Saccharomyces cerevisiae m6A sites with higher accuracy, thus facilitating biological hypothesis generation and experimental validations.

15.
Artículo en Inglés | MEDLINE | ID: mdl-31979044

RESUMEN

Diagnosis and management of musculoskeletal pain is a major clinical challenge. Following this need, the first aim of our study was to provide an innovative magnetic resonance technique called T1ρ to quantify possible alterations in elbow pain, a common musculoskeletal pain syndrome that has not a clear etiology. Five patients were recruited presenting chronic elbow pain (>3 months), with an age between 30 and 70 years old. Patients underwent two T1ρ-mapping evaluations, one before and one after the series of Fascial Manipulation® (FM) treatments. After the first MRI evaluation, a Disability of the Arm, Shoulder and Hand (DASH) questionnaire was administered to quantify the symptoms and pain intensity. Patients then received three sessions of FM, once a week for 40 min each. A statistically significant difference was found between bound and unbound water concentration before and after FM treatment. Our preliminary data suggest that the application of the manual method seems to decrease the concentration of unbound water inside the deep fascia in the most chronic patients. This could explain the change in viscosity perceived by many practitioners as well as the decrease of symptoms due to the restoration of the normal property of the loose connective tissue. Being able to identify an altered deep fascial area may better guide therapies, contributing to a more nuanced view of the mechanisms of pain.


Asunto(s)
Fascia , Glicosaminoglicanos , Manipulaciones Musculoesqueléticas , Dolor Musculoesquelético , Agua , Adulto , Anciano , Codo , Glicosaminoglicanos/análisis , Humanos , Persona de Mediana Edad , Dolor Musculoesquelético/diagnóstico , Dolor Musculoesquelético/terapia , Agua/análisis
16.
Phys Rev E ; 102(6-1): 062150, 2020 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-33466020

RESUMEN

We explore, employing the renormalization-group theory, the critical scaling behavior of the permutation symmetric three-vector model that obeys nonconserving dynamics and has a relevant anisotropic perturbation which drives the system into a nonequilibrium steady state. We explicitly find the independent critical exponents with corrections up to two loops. They include the static exponents ν and η, the off equilibrium exponent η[over ̃], the dynamic exponent z, and the strong anisotropy exponent Δ. We also express the other anisotropy exponents in terms of these.

17.
J Magn Reson Imaging ; 51(2): 426-434, 2020 02.
Artículo en Inglés | MEDLINE | ID: mdl-31282080

RESUMEN

BACKGROUND: Quantification of dynamic biomechanical strain in articular cartilage in vivo; in situ using noninvasive MRI techniques is desirable and may potentially be used to assess joint pathology. PURPOSE: To demonstrate the use of static mechanical loading and continuous 3D-MRI acquisition of the human knee joint in vivo to measure the strain in the tibiofemoral articular cartilage. STUDY TYPE: Prospective. SUBJECTS: Five healthy human volunteers (four women, one man; age 25.6 ± 1.7) underwent MRI at rest, under static mechanical loading condition, and during recovery. FIELD STRENGTH/SEQUENCE: A field strength of 3T was used. The sequence used was 3D-continuous golden angle radial sparse parallel (GRASP) MRI and compressed sensing (CS) reconstruction. ASSESSMENT: Tibiofemoral cartilage deformation maps under loading and during recovery were calculated using an optical flow algorithm. The corresponding Lagrangian strain was calculated in the articular cartilage. STATISTICAL TESTS: Range of displacement and strain in each subject, and the resulting mean and standard deviation, were calculated. RESULTS: During the loading condition, the cartilage displacement in the direction of loading ranged from a minimum of -673.6 ± 121.9 µm to a maximum of 726.5 ± 169.5 µm. Corresponding strain ranged from a minimum of -7.0 ± 4.2% to a maximum of 5.4 ± 1.6%. During the recovery condition, the cartilage displacement in the same direction reduced to a minimum of -613.0 ± 129.5 µm and a maximum of 555.7 ± 311.4 µm. The corresponding strain range reduced to a minimum of -1.6 ± 7.5% to a maximum of 4.2 ± 2.6%. DATA CONCLUSION: This study shows the feasibility of using static mechanical loading with continuous GRASP-MRI acquisition to measure the strain in the articular cartilage. By measuring strain during the loading and recovery phases, dynamic strain information in the articular cartilage might be able to be investigated. LEVEL OF EVIDENCE: 2 Technical Efficacy: Stage 1 J. Magn. Reson. Imaging 2020;51:426-434.


Asunto(s)
Cartílago Articular , Imagen por Resonancia Magnética , Adulto , Cartílago Articular/diagnóstico por imagen , Femenino , Voluntarios Sanos , Humanos , Articulación de la Rodilla/diagnóstico por imagen , Masculino , Estudios Prospectivos , Adulto Joven
18.
Sci Rep ; 9(1): 14513, 2019 10 10.
Artículo en Inglés | MEDLINE | ID: mdl-31601831

RESUMEN

The purpose of this study was to provide imaging evidence of increased glycosaminoglycan (GAG) content in patients with post-stroke muscle stiffness; and to determine the effect of hyaluronidase treatment on intramuscular GAG content. In this prospective study, we used 3D-T1ρ (T1rho) magnetic resonance (MR) mapping of the upper arm muscles to quantify GAG content in patients with post-stroke muscle stiffness before and after hyaluronidase injection treatment. For this study, healthy controls (n = 5), and patients with post-stroke muscle stiffness (n = 5) were recruited (March 2017-April 2018). T1ρ MR imaging and Dixon water-fat MR imaging of the affected upper arms were performed before and after off-label treatment with hyaluronidase injections. T1ρ mapping was done using a three-parameter non-linear mono-exponential fit. Wilcoxon Mann-Whitney test was used to compare patients' vs controls and pre- vs post-treatment conditions. The T1ρ values in the biceps were significantly higher in patients before treatment (34.04 ± 4.39 ms) compared with controls (26.70 ± 0.54 ms; P = 0.006). Significant improvement was seen in the biceps of patients before (35.48 ± 3.38 ms) and after treatment (29.45 ± 1.23 ms; P = 0.077). Dixon water-fat distribution was not significantly different in the patients compared to the controls (biceps P = 0.063; triceps P = 0.190). These results suggest that T1ρ mapping can be used to quantify GAG content in the muscles of patients with post-stroke muscle stiffness, and that muscle hyaluronan content is increased in stiff muscles compared with controls, providing imaging corroboration for the hyaluronan hypothesis of muscle stiffness.


Asunto(s)
Glicosaminoglicanos/metabolismo , Imagen por Resonancia Magnética , Fuerza Muscular/fisiología , Músculo Esquelético/metabolismo , Adulto , Cartílago Articular/efectos de los fármacos , Cartílago Articular/metabolismo , Cartílago Articular/patología , Femenino , Glicosaminoglicanos/aislamiento & purificación , Humanos , Hialuronoglucosaminidasa/administración & dosificación , Masculino , Persona de Mediana Edad , Fuerza Muscular/efectos de los fármacos , Músculo Esquelético/diagnóstico por imagen , Músculo Esquelético/efectos de los fármacos
19.
J Magn Reson Imaging ; 49(3): 744-751, 2019 03.
Artículo en Inglés | MEDLINE | ID: mdl-30211442

RESUMEN

BACKGROUND: Safe and accurate imaging of the peripheral arterial system is important for diagnosis and treatment planning of patients with peripheral artery disease (PAD). PURPOSE: To evaluate image quality and diagnostic performance of unenhanced magnetic resonance angiography (MRA) based on velocity-selective (VS) magnetization preparation (termed VS-MRA). STUDY TYPE: Prospective. POPULATION: Thirty-one symptomatic PAD patients underwent VS-MRA. Twenty-four of them underwent clinical digital subtraction angiography (DSA) examination, 18.8 ± 5.2 days after the MR scans. FIELD STRENGTH/SEQUENCE: 1.5T MRI that included VS-MRA (homemade research sequence) and phase-contrast flow imaging (clinical sequence). ASSESSMENT: Image quality (0: nondiagnostic, 3: excellent) and stenosis severity (0: normal, 3: occlusion) of VS-MRA images were assessed independently by three reviewers. Arterial signal-to-noise-ratio (SNR) and artery-to-muscle contrast-to-noise ratio (CNR) were calculated. STATISTICAL TESTS: The sensitivity and specificity of VS-MRA were calculated for the detection of significant stenosis (>50%) with DSA as the reference standard. Interobserver agreement among the three reviewers was evaluated by using Cohen κ-statistics. RESULTS: The image quality score of VS-MRA was 2.7 ± 0.5 for Reader 1, 2.8 ± 0.5 for Reader 2, and 2.8 ± 0.4 for Reader 3; SNR and CNR were 37.8 ± 12.5 and 30.5 ± 11.8, respectively. Segment-based analysis revealed that VS-MRA had sensitivities of 85.3%, 74.5%, and 78.4%, respectively, for the three reviewers, and specificities of 93.5%, 96.8%, and 95.2%. The interobserver agreement for the stenosis grading was good, as demonstrated by Cohen κ values of 0.76 (Reader 1 vs. Reader 2), 0.82 (Reader 1 vs. Reader 3), and 0.79 (Reader 2 vs. Reader 3). DATA CONCLUSION: Unenhanced VS-MRA allows clear depiction of the peripheral arteries and accurate stenosis grading, as evidenced by high image quality scores and strong agreement with DSA. LEVEL OF EVIDENCE: 2 Technical Efficacy: Stage 2 J. Magn. Reson. Imaging 2019;49:744-751.


Asunto(s)
Angiografía de Substracción Digital , Procesamiento de Imagen Asistido por Computador/métodos , Angiografía por Resonancia Magnética , Enfermedad Arterial Periférica/diagnóstico por imagen , Anciano , Medios de Contraste/química , Femenino , Humanos , Masculino , Persona de Mediana Edad , Estudios Prospectivos , Reproducibilidad de los Resultados , Sensibilidad y Especificidad
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