Identification and Expression Analysis of the WOX Transcription Factor Family in Foxtail Millet (Setaria italica L.).

WUSCHEL-related homeobox (WOX) transcription factors are unique to plants and play pivotal roles in plant development and stress responses. In this investigation, we acquired protein sequences of foxtail millet WOX gene family members through homologous sequence alignment and a hidden Markov model (HMM) search. Utilizing conserved domain prediction, we identified 13 foxtail millet WOX genes, which were classified into ancient, intermediate, and modern clades. Multiple sequence alignment results revealed that all WOX proteins possess a homeodomain (HD). The SiWOX genes, clustered together in the phylogenetic tree, exhibited analogous protein spatial structures, gene structures, and conserved motifs. The foxtail millet WOX genes are distributed across 7 chromosomes, featuring 3 pairs of tandem repeats: SiWOX1 and SiWOX13, SiWOX4 and SiWOX5, and SiWOX11 and SiWOX12. Collinearity analysis demonstrated that WOX genes in foxtail millet exhibit the highest collinearity with green foxtail, followed by maize. The SiWOX genes primarily harbor two categories of cis-acting regulatory elements: Stress response and plant hormone response. Notably, prominent hormones triggering responses include methyl jasmonate, abscisic acid, gibberellin, auxin, and salicylic acid. Analysis of SiWOX expression patterns and hormone responses unveiled potential functional diversity among different SiWOX genes in foxtail millet. These findings lay a solid foundation for further elucidating the functions and evolution of SiWOX genes.

Qudit-based high-dimensional controlled-not gate.

High-dimensional quantum systems expand quantum channel capacity and information storage space. By implementing high-dimensional quantum logic gates, the speed of quantum computing can be practically enhanced. We propose a deterministic 4 × 4-dimensional controlled-not (CNOT) gate for a hybrid system without ancillary qudits required, where the spatial and polarization states of a single photon serve as a control qudit of four dimensions, whereas two electron-spin states in nitrogen-vacancy (NV) centers act as a four-dimensional target qudit. As the control qudits are easily operated employing simple optical elements and the target qudits are available for storage, the CNOT gate works in a deterministic way, and it can be flexibly extended to n × n-dimensional (n > 4) quantum gates for other hybrid systems or different photonic degrees of freedoms. The efficiency and fidelity of the CNOT gate are analyzed aligning with current technological capabilities, finding that they have satisfactory performances.

Lipase in-situ immobilized in covalent organic framework: Enzymatic properties and application in the preparation of 1, 3-dioleoyl-2-palmitoylglycerol.

In this study, the critical importance of designing an appropriate immobilized carrier and method for free lipase to ensure exceptional biological catalytic activity and stability was emphasized. Covalent organic frameworks (COF-1) were synthesized as a novel porous carrier with an azine structure (-CN-NC-) through the condensation of hydrazine hydrate and benzene-1,3,5-tricarbaldehyde at room temperature. Simultaneously, Rhizomucor miehei lipase (RML) was immobilized within the COF-1 carrier using an in-situ aqueous phase method. Characterization of the carrier and RML@COF-1 and evaluation of the lipase properties of RML and RML@COF-1 through p-Nitrophenyl palmitate hydrolysis were conducted. Additionally, application in the synthesis of 1, 3-dioleoyl-2-palmitoylglycerol (OPO) was explored. The results showed that RML@COF-1 exhibited a high enzymatic loading of 285.4 mg/g. Under 60℃ conditions, the activity of RML@COF-1 was 2.31 times higher than that of free RML, and RML@COF-1 retained 77.25% of its original activity after 10 cycles of repeated use, indicating its excellent thermal stability and repeatability. Under the optimal conditions (10%, 1:8 PPP/OA, 45℃, 5 h), the yield of OPO reached 47.35%, showcasing the promising application prospects of the novel immobilized enzyme synthesized via in-situ aqueous phase synthesis for OPO preparation.

Decoherence-free-subspace-based deterministic conversions for entangled states with heralded robust-fidelity quantum gates.

The decoherence-free subspace (DFS) serves as a protective shield against certain types of environmental noise, allowing the system to remain coherent for extended periods of time. In this paper, we propose two protocols, i.e., one converts two-logic-qubit Knill-Laflamme-Milburn (KLM) state to two-logic-qubit Bell states, and the other converts three-logic-qubit KLM state to three-logic-qubit Greenberger-Horne-Zeilinger states, through cavity-assisted interaction in DFS. Especially, our innovative protocols achieve their objectives in a heralded way, thus enhancing experimental accessibility. Moreover, single photon detectors are incorporated into the setup, which can predict potential failures and ensure seamless interaction between the nitrogen-vacancy center and photons. Rigorous analyses and evaluations of two schemes demonstrate their abilities to achieve near-unit fidelities in principle and exceptional efficiencies. Further, our protocols offer progressive solutions to the challenges posed by decoherence, providing a pathway towards practical quantum technologies.

Recent advances and challenges of the use of the CRISPR/Cas system as a non-nucleic acid molecular diagnostic.

The clustered regularly interspaced short palindromic DNA sequence repeats (CRISPR) and CRISPR-associated (Cas) (CRISPR/Cas) systems are currently applied not only as a gene editing tool but also as a novel molecular diagnostic technique. The CRISPR/Cas systems have emerged as an efficient molecular diagnostic system that can detect nucleic acids, proteins and small molecule compounds, by converting a non-nucleic acid into a nucleic acid signal of Cas-identifiable and keeping inherent properties of high sensitivity and specificity. While its multiple advantages for nucleic acid detection have been widely published in excellent reviews, there have been no systematic analyses and reviews on the principles and characteristics of CRISPR/Cas-based diagnostic systems for non-nucleic acids. The present work reviewed the basic process, principles, characteristics, strategies, recent advances, and challenges of CRISPR/Cas-based molecular diagnostic methods for detecting non-nucleic acids, which may provide a basis or some references for future development and application as molecular diagnostic tools.

Genome-Wide Identification and Characterization of CLAVATA3/EMBRYO SURROUNDING REGION (CLE) Gene Family in Foxtail Millet (Setaria italica L.).

The CLAVATA3/EMBRYO-SURROUNDING REGION (CLE) genes encode signaling peptides that play important roles in various developmental and physiological processes. However, the systematic identification and characterization of CLE genes in foxtail millet (Setaria italica L.) remain limited. In this study, we identified and characterized 41 SiCLE genes in the foxtail millet genome. These genes were distributed across nine chromosomes and classified into four groups, with five pairs resulting from gene duplication events. SiCLE genes within the same phylogenetic group shared similar gene structure and motif patterns, while 34 genes were found to be single-exon genes. All SiCLE peptides harbored the conserved C-terminal CLE domain, with highly conserved positions in the CLE core sequences shared among foxtail millet, Arabidopsis, rice, and maize. The SiCLE genes contained various cis-elements, including five plant hormone-responsive elements. Notably, 34 SiCLE genes possessed more than three types of phytohormone-responsive elements on their promoters. Comparative analysis revealed higher collinearity between CLE genes in maize and foxtail millet, which may be because they are both C4 plants. Tissue-specific expression patterns were observed, with genes within the same group exhibiting similar and specific expression profiles. SiCLE32 and SiCLE41, classified in Group D, displayed relatively high expression levels in all tissues except panicles. Most SiCLE genes exhibited low expression levels in young panicles, while SiCLE6, SiCLE24, SiCLE25, and SiCLE34 showed higher expression in young panicles, with SiCLE24 down-regulated during later panicle development. Greater numbers of SiCLE genes exhibited higher expression in roots, with SiCLE7, SiCLE22, and SiCLE36 showing the highest levels and SiCLE36 significantly down-regulated after abscisic acid (ABA) treatment. Following treatments with ABA, 6-benzylaminopurine (6-BA), and gibberellic acid 3 (GA3), most SiCLE genes displayed down-regulation followed by subsequent recovery, while jasmonic acid (JA) and indole-3-acetic acid (IAA) treatments led to upregulation at 30 min in leaves. Moreover, identical hormone treatments elicited different expression patterns of the same genes in leaves and stems. This comprehensive study enhances our understanding of the SiCLE gene family and provides a foundation for further investigations into the functions and evolution of SiCLE genes in foxtail millet.

Holographic generation of arbitrary ultrasonic fields by simultaneous modulation of amplitude and phase.

Acoustic holograms have been used widely to generate desired acoustic fields. Following the rapid development of 3D printing technology, the use of holographic lenses has become an efficient method to produce acoustic fields with high resolution and low cost. In this paper, we demonstrate a technique to modulate the amplitude and phase of ultrasonic waves simultaneously using a holographic method with high transmission efficiency and high accuracy. On this basis, we generate an Airy beam with high propagation invariance. We then discuss the advantages and disadvantages of the proposed method when compared with the conventional acoustic holographic method. Finally, we design a sinusoidal curve with a phase gradient and a constant pressure amplitude and realize transport of a particle on a water surface along a curve.

Nonsmooth funnel transformation function-based discrete-time sliding-mode control with deterministic performance margin for servo systems.

This paper proposes a nonsmooth funnel transformation function-based discrete-time sliding-mode control strategy for the discrete-time servo systems with unknown frictions and disturbances. For obtaining a more accurate discrete-time system model, a filter-based adaptive identification algorithm (FAIA) is introduced, where the unknown measurement noises are considered. Based on the identified system model and a novel discrete-time nonsmooth funnel transformation function (improving the tracking performances), a discrete-time sliding-mode surface is designed to confine the tracking error to a smaller funnel region compared with the predefined one, which has a deterministic performance margin related to the upper bound of the lumped disturbance. Furthermore, selections of steady-state funnel boundary and sliding-mode surface parameter can be guided theoretically according to the upper bound of the lumped disturbance. Experimental results show that the tracking error is guaranteed in the predefined funnel with a deterministic performance margin by using the proposed control strategy.

Multi-H∞ Controls for Unknown Input-Interference Nonlinear System With Reinforcement Learning.

This article studies the multi- [Formula: see text] controls for the input-interference nonlinear systems via adaptive dynamic programming (ADP) method, which allows for multiple inputs to have the individual selfish component of the strategy to resist weighted interference. In this line, the ADP scheme is used to learn the Nash-optimization solutions of the input-interference nonlinear system such that multiple [Formula: see text] performance indices can reach the defined Nash equilibrium. First, the input-interference nonlinear system is given and the Nash equilibrium is defined. An adaptive neural network (NN) observer is introduced to identify the input-interference nonlinear dynamics. Then, the critic NNs are used to learn the multiple [Formula: see text] performance indices. A novel adaptive law is designed to update the critic NN weights by minimizing the Hamiltonian-Jacobi-Isaacs (HJI) equation, which can be used to directly calculate the multi- [Formula: see text] controls effectively by using input-output data such that the actor structure is avoided. Moreover, the control system stability and updated parameter convergence are proved. Finally, two numerical examples are simulated to verify the proposed ADP scheme for the input-interference nonlinear system.

Flexible acoustic lens-based surface acoustic wave device for manipulation and directional transport of micro-particles.

Microfluidics is an emerging technology that is playing increasingly important roles in biomedical and pharmaceutical research and development. Surface acoustic waves (SAWs) have been combined with microfluidics technology to establish a SAW-based microfluidics technology that uses the unique interaction between the two techniques to manipulate substances effectively in fluids on the surface of a substrate. This paper reports a method to generate SAWs using conventional planar ultrasonic transducers and acoustic lenses. Additionally, this method is introduced to manipulate particles effectively on a substrate surface. It is demonstrated that the particle positions can be manipulated precisely in any direction on the substrate surface, thus enabling high-precision particle manipulation. We also proposed the generation of nonplanar SAWs via appropriate design of the acoustic lens and realized directional particle transport. In addition, structures to enhance forward-propagating acoustic beams are proposed. The proposed method has potential for use in microfluidics and biomedical applications, allowing tasks such as flexible cell manipulation on a chip to be performed without complex design or micromachining.

Efficient adsorption and reduction of Cr(VI) from aqueous solution by Santa Barbara Amorphous-15 (SBA-15) supported Fe/Ni bimetallic nanoparticles.

Nanoscale zero-valent iron (nZVI or Fe0) can rapidly reduce Cr(VI) contaminants in the water environment, but the agglomeration and passivation of the Fe0 system have adverse effects on its application. In this study, a novel mesoporous Santa Barbara Amorphous-15 supported Fe/Ni bimetallic composite (SBA-15@Fe/Ni) is proposed to remove Cr(VI). The proposed material can enhance the stability and removal capacity of the nZVI system. The results show that the unique six-way through-hole structure of SBA-15 provides a place for the dispersion of Fe0 particles. Meanwhile, SBA-15 effectively alleviates the accumulation of Fe0 particles. The removal efficiency of SBA-15@Fe/Ni is better than two single systems (SBA-15 and Fe/Ni). The removal efficiency of SBA-15@Fe/Ni towards Cr(VI) can reach 97.62% after 60 min at pH 4.0. SBA-15@Fe/Ni still maintains excellent performance in the presence of various competitive ions (Cl-, SO42-, CO32-, NO3-). At 298 K, the maximum removal capacity of SBA-15@Fe/Ni towards Cr(VI) is 180.99 mg/g. The possible removal process of SBA-15@Fe/Ni towards Cr(VI) is divided into the following steps: First, Cr(VI) is attracted into the vicinity of the SBA-15@Fe/Ni channel by the electrostatic attraction; Second, the reduction of Cr(VI) occurs after contacting with the Fe/Ni system, and its driving force mainly comes from nZVI and Fe(II); Furthermore, the introduction of Ni can promote Cr(VI) reduction through electron transfer and catalytic hydrogenation. In conclusion, adopting SBA-15@Fe/Ni to treat chromium contamination is an effective and promising approach.

Correction: Graphene oxide-iron oxide and reduced graphene oxide-iron oxide hybrid materials for the removal of organic and inorganic pollutants.

[This corrects the article DOI: 10.1039/C2RA20885G.].

Retraction: Sequestration and speciation of Eu(III) on gamma alumina: role of temperature and contact order.

Retraction of 'Sequestration and speciation of Eu(III) on gamma alumina: role of temperature and contact order' by Yawen Cai et al., Environ. Sci.: Processes Impacts, 2015, 17, 1904-1914, https://doi.org/10.1039/C5EM00412H.

Retraction: A carboxymethyl cellulose modified magnetic bentonite composite for efficient enrichment of radionuclides.

[This retracts the article DOI: 10.1039/C6RA10990J.].

Genome-Wide Development of Polymorphic Microsatellite Markers and Association Analysis of Major Agronomic Traits in Core Germplasm Resources of Tartary Buckwheat.

Tartary buckwheat (TB; Fagopyrum tataricum Gaertn.) is an important multigrain crop and medicinal plant, but functional genomics and molecular breeding research in this species have been lacking for quite some time. Here, genome-wide screening was performed to develop simple sequence repeat (SSR) markers associated with six major agronomic traits and the rutin contents of 97 core germplasm resources. A total of 40,901 SSR loci were identified; they were uniformly distributed throughout the TB genome, with a mean distance of 11 kb between loci. Based on these loci, 8,089 pairs of SSR primers were designed, and 101 primer pairs for polymorphic SSR loci were used to genotype the 97 core germplasm resources. The polymorphic SSR loci showed high genetic variation in these core germplasm resources, with an average polymorphic information content (PIC) value of 0.48. In addition, multiple SSR markers, such as SXAU8002 [100-grain weight (HGW)] and SXAU8006 [stem diameter (SD)], were found to be associated with agronomic traits in the two environments. Finally, based on gene functional annotation and homology analysis, a candidate gene, FtPinG0007685500, that may affect the node number and SD of the main stem by participating in lignin synthesis was identified. This study reports the mining of genome-wide SSR loci and the development of markers in TB, which can be used for molecular characterization of the germplasm in its gene pool. In addition, the detected markers and candidate genes could be used for marker-assisted breeding and functional gene cloning in TB.

Insight into UV-induced simultaneous photocatalytic degradation of Ti3C2Tx MXene and reduction of U(VI).

With the development of MXene as the efficient adsorbent for U(VI), the tendency of MXene coming into contact with U(VI) in wastewaters increases. Motivated by UV light irradiation applied in wastewater treatments, the UV light induced photochemical co-transformation of Ti3C2Tx MXene and U(VI) is studied. To clarify the role of U(VI) induced Ti3C2Tx aggregation in phototransformation of Ti3C2Tx, the aggregation kinetics of Ti3C2Tx in the presence of various valent radioactive ions are investigated, obtaining the critical coagulation concentrations (CCC) of Ti3C2Tx for Cs+, Sr2+, UO22+, Eu3+, and Th4+. Besides, the colloidal stability of UV-induced Ti3C2Tx as a function of standing time is discussed. The results show that the aggregation behavior of Ti3C2Tx induced by radioactive ions follows the classical Derjaguin-Landau-Verwey-Overbeek (DLVO) theory and the Schulze-Hardy rule. The UV irradiation will change the physicochemical properties and colloidal stabilities of Ti3C2Tx. Furthermore, the degradation of Ti3C2Tx can be accelerated by UV irradiation and further promoted by the presence of U(VI). The removal of U(VI) is highest in the case of Ti3C2Tx combined with UV irradiation via adsorption and reduction. This study provides an example demonstrating that the simultaneous transformation of Ti3C2Tx (adsorbent) and U(VI) (adsorbate) to mild toxic components.

Precise micro-particle and bubble manipulation by tunable ultrasonic bottle beams.

This paper reports a method to generate tunable bottle beams using an ultrasonic lens, by which the bottle position can be precisely adjusted with the change of the acoustic frequency. Therefore, the position of a single particle or bubble in liquid can be manipulated without using phased array which is costly and huge with complex circuits. Furthermore, we introduced this method to multiple bubble manipulation using acoustic holography. The bottle properties against frequency are theoretically and experimentally analyzed. It is shown that the bottle position depends almost linearly on the operating frequency, which provides a basis for the precise manipulation of bubbles and particles. In addition, the relationship between the acoustic radiation force and the drag force under different incident acoustic pressures is considered, establishing a limit on the moving velocity of the trapped particles. The ultrasonic field observation is further demonstrated by Schlieren imaging system. The proposed method has potential biomedical applications, such as more flexible cell manipulation and targeted drug delivery in vivo, as well as potential applications in the study of chemical reactions between micro objects.

Transformation details of poly(acrylonitrile) to poly(amidoxime) during the amidoximation process.

During the amidoximation process, transformation details of poly(acrylonitrile) (PAN) to poly(amidoxime) (PAO) is critical for optimizing amidoximation conditions, which determine the physicochemical properties and adsorption capabilities of PAO-based materials. Although the optimization of amidoximation conditions can be reported in the literature, a detailed research on the transformation is still missing. Herein, the effect of the amidoximation conditions (i.e. temperature, time, and NH2OH concentration) on the physicochemical properties and adsorption capabilities of PAO was studied in detail. The results showed that the extent of amidoximation reaction increased with increasing temperature, time, and NH2OH concentration. However, a considerably high temperature (>60 °C) and a considerably long time (>3 h) could result in the degradation and decomposition of PAO's surface topologies and functional groups, and then decrease its adsorption capability for U(vi). The optimal amidoximation condition was 3 h, 60 °C and 50 g L-1 NH2OH. At this condition, the PAO obtained presented the highest adsorption capability for U(vi) under experimental conditions. These results provide pivotal information on the transformation of PAO-based materials during the amidoximation process.

A novel recursive learning estimation algorithm of Wiener systems with quantized observations.

In this paper, a novel recursive learning identification approach is proposed to estimate the parameters of the Wiener systems with quantized output. By using a filter with adaptive performance, the data preprocessing is achieved based on the system data. To derive the error information of parameter estimation, some filtered and intermediate variables are developed. Based on the estimation error and initial parameter data, a novel loss function is established, in which the estimation precision can be raised by force of the estimation error data and the convergence rate can be improved based on the initial parameter data. By minimizing the loss function, a novel recursive learning estimator is derived where the performance of the modified gain is improved due to the utilization of the observed data. Under the continuous excitation condition, the convergence analysis shows that the estimation error can converge to zero. Finally, illustrative examples and a real-life experiment are performed to validate the obtained results and efficiency of the proposed algorithm.

Acoustic trapping of particles using a Chinese taiji lens.

Focused acoustic vortex (FAV) beams can trap particles in a contactless and non-destructive way and the method has thereby attracted much attention. In contrast to the traditional complex and expensive transducer array, we propose a fast and cheap method to generate FAV beams in water using an ultrasonic holographic lens engraved with the Chinese taiji pattern. This method can obtain high transmission efficiency, and hence the strong trapping force makes the particles trapped stably in a straight line. The formation of the FAV beams derives from a superposition of the spiral phase of a Laguerre Gaussian beam and the focusing phase. Because of the phase singularity of this beam, the intensity of the ultrasonic field on the beam axis is zero, thereby forming a strong gradient surround the beam axis. The trapping and manipulation of polystyrene particles with a radius of 150 µm is realized in the gradient field of the FAV beam. The proposed single beam acoustic trapping method does not depend on the reflector, making it more suitable for the manipulation of cells in vivo.