Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 31
Filtrar
1.
Clin Genet ; 103(6): 663-671, 2023 06.
Artículo en Inglés | MEDLINE | ID: mdl-36999564

RESUMEN

Limb-girdle muscular dystrophy recessive 1 (LGMDR1), previously known as LGMD2A, is a specific LGMD caused by a gene mutation encoding the calcium-dependent neutral cysteine protease calpain-3 (CAPN3). In our study, the compound heterozygosity with two missense variants c.635 T > C (p.Leu212Pro) and c.2120A > G (p.Asp707Gly) was identified in patients with LGMDR1. However, the pathogenicity of c.635 T > C has not been investigated. To evaluate the effects of this novel likely pathogenic variant to the motor system, the mouse model with c.635 T > C variant was prepared by CRISPR/Cas9 gene editing technique. The pathological results revealed that a limited number of inflammatory cells infiltrated the endomyocytes of certain c.635 T > C homozygous mice at 10 months of age. Compared with wild-type mice, motor function was not significantly impaired in Capn3 c. 635 T > C homozygous mice. Western blot and immunofluorescence assays further indicated that the expression levels of the Capn3 protein in muscle tissues of homozygous mice were similar to those of wild-type mice. However, the arrangement and ultrastructural alterations of the mitochondria in the muscular tissues of homozygous mice were confirmed by electron microscopy. Subsequently, muscle regeneration of LGMDR1 was simulated using cardiotoxin (CTX) to induce muscle necrosis and regeneration to trigger the injury modification process. The repair of the homozygous mice was significantly worse than that of the control mice at day 15 and day 21 following treatment, the c.635 T > C variant of Capn3 exhibited a significant effect on muscle regeneration of homozygous mice and induced mitochondrial damage. RNA-sequencing results demonstrated that the expression levels of the mitochondrial-related functional genes were significantly downregulated in the mutant mice. Taken together, the results of the present study strongly suggested that the LGMDR1 mouse model with a novel c.635 T > C variant in the Capn3 gene was significantly dysfunctional in muscle injury repair via impairment of the mitochondrial function.


Asunto(s)
Distrofia Muscular de Cinturas , Mutación Missense , Humanos , Animales , Ratones , Proteínas Musculares/genética , Músculo Esquelético/patología , Distrofia Muscular de Cinturas/genética , Mutación , Calpaína/genética , Modelos Animales de Enfermedad
2.
Genes (Basel) ; 13(9)2022 08 29.
Artículo en Inglés | MEDLINE | ID: mdl-36140726

RESUMEN

Pathogenic variants of zinc finger C4H2-type containing (ZC4H2) on the X chromosome cause a group of genetic diseases termed ZC4H2-associated rare disorders (ZARD), including Wieacker-Wolff Syndrome (WRWF) and Female-restricted Wieacker-Wolff Syndrome (WRWFFR). In the current study, a de novo c.352C>T (p.Gln118*) mutation in ZC4H2 (NM_018684.4) was identified in a female neonate born with severe arthrogryposis multiplex congenita (AMC) and Pierre-Robin sequence (cleft palate and micrognathia). Plasmids containing the wild-type (WT), mutant-type (MT) ZC4H2, or GFP report gene (N) were transfected in 293T cell lines, respectively. RT-qPCR and western blot analysis showed that ZC4H2 protein could not be detected in the 293T cells transfected with MT ZC4H2. The RNA seq results revealed that the expression profile of the MT group was similar to that of the N group but differed significantly from the WT group, indicating that the c.352C>T mutation resulted in the loss of function of ZC4H2. Differentially expressed genes (DEGs) enrichment analysis showed that c.352C>T mutation inhibited the expression levels of a series of genes involved in the oxidative phosphorylation pathway. Subsequently, expression levels of ZC4H2 were knocked down in neural stem cells (NSCs) derived from induced pluripotent stem cells (iPSCs) by lentiviral-expressed small hairpin RNAs (shRNAs) against ZC4H2. The results also demonstrated that decreasing the expression of ZC4H2 significantly reduced the growth of NSCs by affecting the expression of genes related to the oxidative phosphorylation signaling pathway. Taken together, our results strongly suggest that ZC4H2 c.352C>T (p.Gln118*) mutation resulted in the loss of protein function and caused WRWFFR.


Asunto(s)
Codón sin Sentido , Proteínas Nucleares , Animales , Apraxias , Proteínas Portadoras/genética , Contractura , Femenino , Enfermedades Genéticas Ligadas al Cromosoma X , Péptidos y Proteínas de Señalización Intracelular/genética , Atrofia Muscular , Proteínas Nucleares/genética , Oftalmoplejía , Fenotipo
3.
Int J Biochem Cell Biol ; 92: 115-120, 2017 11.
Artículo en Inglés | MEDLINE | ID: mdl-28965985

RESUMEN

Trisomy 21 is the most common chromosomal disorder and underlies Down syndrome. Epigenetics, such as DNA methylation and post-translational histone modifications, plays a vital role in Down syndrome. However, the functions of epigenetics-related long noncoding RNAs (lncRNAs), found to have an impact on neural diseases such as Alzheimer's disease, remain unknown in Down syndrome. In this study, we analyzed the RNA sequencing data from Down syndrome-induced pluripotent stem cells (iPSCs) and normal iPSCs. A large number of lncRNAs were identified differentially expressed in Down syndrome-iPSCs. Notably, stronger perturbation was shown in the expression of lncRNAs compared to protein coding genes (Kolmogorov-Smirnov test, P<0.05), suggesting that lncRNAs play more important roles in Down syndrome. Through gene set enrichment analysis and bi-clustering, we also found that most of the differential expressed lncRNAs were closely associated with mitochondrial functions (e.g. mitochondrion organization, P=3.21×10-17; mitochondrial ATP synthesis coupled electron transport, P=1.73×10-19 and mitochondrial membrane organization, P=4.04×10-8). PCR-array and qRT-PCR results revealed that almost all genes related to mitochondria were down-regulated in Down syndrome-iPSCs, implying that mitochondria were dysfunctional in Down syndrome (e.g. ATP5B, Fold Change=-8.2317; COX6A1, Fold Change=-12.7788 and SLC25A17, Fold Change=-22.1296). All in all, our study indicated that a stronger perturbation of lncRNAs expression may lead to the dysfunction of mitochondria in Down syndrome.


Asunto(s)
Síndrome de Down/genética , Síndrome de Down/patología , Perfilación de la Expresión Génica , Mitocondrias/genética , ARN Largo no Codificante/genética , Humanos , Células Madre Pluripotentes Inducidas/metabolismo
4.
Oncotarget ; 7(38): 61215-61228, 2016 Sep 20.
Artículo en Inglés | MEDLINE | ID: mdl-27542205

RESUMEN

Epigenetics regulations have an important role in fertilization and proper embryonic development, and several human diseases are associated with epigenetic modification disorders, such as Rett syndrome, Beckwith-Wiedemann syndrome and Angelman syndrome. However, the dynamics and functions of long non-coding RNAs (lncRNAs), one type of epigenetic regulators, in human pre-implantation development have not yet been demonstrated. In this study, a comprehensive analysis of human and mouse early-stage embryonic lncRNAs was performed based on public single-cell RNA sequencing data. Expression profile analysis revealed that lncRNAs are expressed in a developmental stage-specific manner during human early-stage embryonic development, whereas a more temporal-specific expression pattern was identified in mouse embryos. Weighted gene co-expression network analysis suggested that lncRNAs involved in human early-stage embryonic development are associated with several important functions and processes, such as oocyte maturation, zygotic genome activation and mitochondrial functions. We also found that the network of lncRNAs involved in zygotic genome activation was highly preservative between human and mouse embryos, whereas in other stages no strong correlation between human and mouse embryo was observed. This study provides insight into the molecular mechanism underlying lncRNA involvement in human pre-implantation embryonic development.


Asunto(s)
Regulación del Desarrollo de la Expresión Génica , ARN Largo no Codificante/genética , Transcriptoma , Animales , Blastocisto/metabolismo , Ciclo Celular , Desarrollo Embrionario/genética , Epigénesis Genética , Perfilación de la Expresión Génica , Genoma , Genoma Humano , Humanos , Ratones , Modelos Estadísticos , Mórula/metabolismo , Oocitos/metabolismo , Curva ROC , Análisis de Secuencia de ARN , Análisis de la Célula Individual , Factores de Tiempo , Cigoto/metabolismo
6.
Genet Test Mol Biomarkers ; 16(4): 297-301, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-22339077

RESUMEN

Achondroplasia (ACH) is a genetic disorder with autosomal dominant inheritance and is the cause of one of the most common forms of short limb dwarfism in humans. Mutations of special sites in the fibroblast growth factor receptor-3 gene (FGFR3) are reported as a cause of ACH, and almost 98% of cases are caused by mutations in nucleotide 1138 (Gly380Arg), with 97% involving a c.1138G>A mutation and 1% involving a c.1138G>C mutation. Therefore, the development of a simple, reliable, and rapid approach for molecular detection of nucleotide 1138 mutations is of great significance for prevention and early diagnosis of ACH. High-resolution melting (HRM) is a new, rapid, and inexpensive molecular detection method that has been generally applied to mutation scanning. In this study, 12 cases of ACH, including 10 sporadic cases and 2 cases in a pedigree, were detected simultaneously using HRM analysis and restriction fragment length polymorphism-polymerase chain reaction (RFLP-PCR). Eleven cases were identified as carrying the c.1138 G>A heterozygous mutation, and one case was identified as carrying the c.1138 G>C heterozygous mutation. Compared with RFLP-PCR, HRM analysis provided a more rapid, simpler, and less expensive approach for detecting the most common FGFR3 mutations carried by patients with ACH.


Asunto(s)
Acondroplasia/genética , Análisis Mutacional de ADN/métodos , Reacción en Cadena de la Polimerasa/métodos , Receptor Tipo 3 de Factor de Crecimiento de Fibroblastos/genética , Temperatura de Transición , Acondroplasia/diagnóstico , Niño , Preescolar , Femenino , Humanos , Masculino , Mutación , Polimorfismo de Longitud del Fragmento de Restricción , Factores de Tiempo
7.
Lab Chip ; 11(21): 3609-18, 2011 Nov 07.
Artículo en Inglés | MEDLINE | ID: mdl-21909519

RESUMEN

Both basic research and clinical medicine have urgent demands for highly efficient strategies to simultaneously identify many different DNA sequences within a single tube. Effective and simultaneous amplification of multiple target sequences is a prerequisite for any successful multiple nucleic acid detection method. Multiplex PCR is one of the best choices for this purpose. However, due to the intrinsic interference and competition among primer pairs in the same tube, multiple rounds of highly empirical optimization procedures are usually required to establish a successful multiplex PCR reaction. To address this challenge, we report here a universal multiplex PCR strategy that is capable of over 100-plex amplification using a specially designed microarray in which hydrophilic microwells are patterned on a hydrophobic chip. On such an array, primer pairs tagged with a universal sequence are physically separated in individual hydrophilic microwells on an otherwise hydrophobic chip, enabling many unique PCR reactions to be proceeded simultaneously during the first step of the procedure. The PCR products are then isolated and further amplified from the universal sequences, producing a sufficient amount of material for analysis by conventional gel electrophoresis or DNA microarray technology. This strategy is abbreviated as "MPH&HPM" for "Multiplex PCR on a Hydrophobically and Hydrophilically Patterned Microarray". The feasibility of this method is first demonstrated by a multiplex PCR reaction for the simultaneous detection of eleven pneumonia-causing pathogens. Further, we demonstrate the power of this strategy with a highly successful 116-plex PCR reaction that required only little prior optimization. The effectiveness of the MPH&HPM strategy with clinical samples is then illustrated with the detection of deleted exons of the Duchenne Muscular Dystrophy (DMD) gene, the results are in excellent agreement with the clinical records. Because of its generality, simplicity, flexibility, specificity and capacity of more than 100-plex amplification, the MPH&HPM strategy should have broad applications in both laboratory research and clinical applications when multiplex nucleic acid analysis is required.


Asunto(s)
Reacción en Cadena de la Polimerasa Multiplex , Análisis de Secuencia por Matrices de Oligonucleótidos , ADN/análisis , Cartilla de ADN/química , ADN Bacteriano/análisis , Exones , Humanos , Interacciones Hidrofóbicas e Hidrofílicas , Distrofia Muscular de Duchenne/genética , Mycobacterium tuberculosis/genética , Neumonía/microbiología
8.
BMC Med Genet ; 12: 68, 2011 May 17.
Artículo en Inglés | MEDLINE | ID: mdl-21575262

RESUMEN

BACKGROUND: Chromosome abnormalities, especially trisomy of chromosome 21, 13, or 18 as well as sex chromosome aneuploidy, are a well-established cause of pregnancy loss. Cultured cell karyotype analysis and FISH have been considered reliable detectors of fetal abnormality. However, results are usually not available for 3-4 days or more. Multiplex ligation-dependent probe amplification (MLPA) has emerged as an alternative rapid technique for detection of chromosome aneuploidies. However, conventional MLPA does not allow for relative quantification of more than 50 different target sequences in one reaction and does not detect mosaic trisomy. A multiplexed MLPA with more sensitive detection would be useful for fetal genetic screening. METHODS: We developed a method of array-based MLPA to rapidly screen for common aneuploidies. We designed 116 universal tag-probes covering chromosomes 13, 18, 21, X, and Y, and 8 control autosomal genes. We performed MLPA and hybridized the products on a 4-well flow-through microarray system. We determined chromosome copy numbers by analyzing the relative signals of the chromosome-specific probes. RESULTS: In a blind study of 161 peripheral blood and 12 amniotic fluid samples previously karyotyped, 169 of 173 (97.7%) including all the amniotic fluid samples were correctly identified by array-MLPA. Furthermore, we detected two chromosome X monosomy mosaic cases in which the mosaism rates estimated by array-MLPA were basically consistent with the results from karyotyping. Additionally, we identified five Y chromosome abnormalities in which G-banding could not distinguish their origins for four of the five cases. CONCLUSIONS: Our study demonstrates the successful application and strong potential of array-MLPA in clinical diagnosis and prenatal testing for rapid and sensitive chromosomal aneuploidy screening. Furthermore, we have developed a simple and rapid procedure for screening copy numbers on chromosomes 13, 18, 21, X, and Y using array-MLPA.


Asunto(s)
Aneuploidia , Técnicas de Amplificación de Ácido Nucleico/métodos , Análisis de Secuencia por Matrices de Oligonucleótidos/métodos , Cromosomas Humanos Par 13 , Cromosomas Humanos Par 18 , Cromosomas Humanos Par 21 , Cromosomas Humanos X , Cromosomas Humanos Y , Sondas de ADN , Femenino , Humanos , Cariotipificación , Masculino , Mosaicismo , Embarazo
9.
Int J Hematol ; 93(3): 301-310, 2011 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-21369857

RESUMEN

Although the therapeutic efficacy of ß(654)-thalassaemia treatment using a combination of RNAi and antisense RNA to balance the synthesis of α- and ß-globin chains has been demonstrated previously, and the safety of lentiviral delivery remains unclear. Herein, we used the same ß(654)-thalassaemia mouse model to develop a therapy involving direct delivery of siRNA and antisense RNA plasmids via intravenous injection to simultaneously knock down α-globin transcript levels and restore correct ß-globin splicing. The amount of α-globin mRNAs in siRNA-treated MEL cells decreased significantly, and the properly spliced ß-globin mRNA was restored in HeLaß(654) cells transfected with pcDNA-antisense plasmid. Furthermore, treatment of ß(654)-thalassaemic mice with siRNA and antisense RNA plasmids resulted in significant reduction of poikilocytosis and reticulocyte counts in blood samples, decreased nucleated cell populations in bone marrow, and reduced intrasinusoidal extramedullary haematopoiesis loci and iron accumulation in liver. RT-PCR analysis revealed that treatment resulted in down-regulation of α-globin mRNA synthesis by ~50% along with an increase in the presence of normally spliced ß-globin transcripts, indicating that the phenotypic changes observed in ß(654)-thalassaemic mice following treatment resulted from restoration of the balance of α/ß-globin biosynthesis.


Asunto(s)
Vectores Genéticos/farmacología , Plásmidos/farmacología , ARN sin Sentido/farmacología , ARN Interferente Pequeño/farmacología , Globinas alfa/biosíntesis , Globinas beta/biosíntesis , Talasemia beta/terapia , Animales , Células de la Médula Ósea/metabolismo , Regulación hacia Abajo/efectos de los fármacos , Regulación hacia Abajo/genética , Vectores Genéticos/genética , Células HeLa , Hematopoyesis Extramedular/efectos de los fármacos , Hematopoyesis Extramedular/genética , Humanos , Ratones , Ratones Mutantes , Plásmidos/genética , Empalme del ARN/efectos de los fármacos , Empalme del ARN/genética , ARN sin Sentido/genética , ARN Interferente Pequeño/genética , Globinas alfa/genética , Globinas beta/genética , Talasemia beta/genética , Talasemia beta/metabolismo
10.
Biotechnol Prog ; 27(2): 592-5, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-21448913

RESUMEN

Recent studies have demonstrated that mitochondrial DNA (mtDNA) haplotype has a significant impact on the efficiency of bovine somatic cell nuclear transfer. Conventional methods for detecting mtDNA variations and haplotypes, such as restriction fragment length polymorphism (RFLP), temporal temperature gradient gel electrophoresis, dHPLC and sequencing, are labor intensive or expensive and have low sensitivity. High-resolution melting (HRM) analysis is a new technique for mutation detection and has the advantages of speed, cost, and accuracy. Here, we describe the genotyping of bovine mtDNA using HRM analysis. DNA samples containing mtDNA were extracted from 75 Holstein cows and subjected to rapid-cycle (<20 min) PCR of small amplicons (<120 bp) using specific primer sets. Capillaries containing the PCR products were then subjected to HRM analysis; data were acquired in 2 min and analyzed using the instrument's software. Five common bovine mtDNA single nucleotide polymorphisms were identified: 9602 G>A, 169 A>G, 166A>G with 173A>G, and 363C>G. These results agree with both sequencing and RFLP analysis. In addition, a very small amount of heteroplasmic variants (<5%) was sufficiently to be distinguished by HRM analysis that would be very useful to differentiate heteroplasmy vs. homoplasmy. HRM analysis thus provides a new approach to genotyping bovine mtDNA sequence variations and has many advantages over other methods, including speed of analysis, cost, and accuracy. We believe this will be a valuable technique for determining the efficiency of nuclear transfer in cloned embryos and for studying maternal effects on nuclear-cytoplasm interactions.


Asunto(s)
Análisis Mutacional de ADN/métodos , ADN Mitocondrial/genética , Desnaturalización de Ácido Nucleico , Reacción en Cadena de la Polimerasa/métodos , Animales , Bovinos , Femenino , Congelación , Genotipo , Polimorfismo de Nucleótido Simple
11.
Yi Chuan ; 32(9): 869-73, 2010 Sep.
Artículo en Chino | MEDLINE | ID: mdl-20870606
12.
J Mol Diagn ; 12(3): 305-11, 2010 May.
Artículo en Inglés | MEDLINE | ID: mdl-20203002

RESUMEN

Glucose-6-phosphate dehydrogenase (G6PD) deficiency, an X-linked inherited disease, is one of the most common enzymopathies and affects over 400 million people worldwide. In China at least 21 distinct point mutations have been identified so far. In this study high-resolution melting (HRM) analysis was used to screen for G6PD mutations in 260 unrelated Han Chinese individuals, and the rapidity and reliability of this method was investigated. The mutants were readily differentiated by using HRM analysis, which produced distinct melting curves for each tested mutation. Interestingly, G1388A and G1376T, the two most common variants accounting for 50% to 60% of G6PD deficiency mutations in the Chinese population, could be differentiated in a single reaction. Further, two G6PD mutations not previously reported in the Chinese population were identified in this study. One of these mutations, designated "G6PD Jiangxi G1340T," involved a G1340T substitution in exon 11, predicting a Gly447Val change in the protein. The other mutation involved a C406T substitution in exon 5. The frequencies of the common polymorphism site C1311T/IVS (intervening sequence) XI t93c between patients with G6PD and healthy volunteers were not significantly different. Thus, HRM analysis will be a useful alternative for screening G6PD mutations.


Asunto(s)
Glucosafosfato Deshidrogenasa/genética , Desnaturalización de Ácido Nucleico , Pueblo Asiatico/genética , Humanos , Mutación , Reacción en Cadena de la Polimerasa , Reproducibilidad de los Resultados
13.
Int J Hematol ; 89(4): 414-421, 2009 May.
Artículo en Inglés | MEDLINE | ID: mdl-19387772

RESUMEN

Expression of human locus control region (LCR) and beta-globin promoter has been recognized as an important factor in time- and tissue-specific expression event. DNA methylation can affect the transcriptional activity of specific genes. To investigate the methylation mechanism in the regulation of LCR and promote expression, this study used a transgenic mouse strain generated previously, in which the hematopoietic-specific expression of the EGFP was driven by human beta-globin promoter and under the control of LCR, to examine the CpG methylation pattern in various tissues. The results showed the inverse correlation between the methylated extent and the levels of gene expression in all tested tissues. We also found that the methylated extent of the 10 examined CpG sites was biased along their positions and is more efficient near the transcription start site. Real-time quantitative RT-PCR analysis of DNA methyltransferases (DNMTs) transcripts showed that Dnmt3a and Dnmt3b expressed with a very low level in the hematopoietic tissues that was coincident with the relative higher EGFP expression in these tissues, indicating that the differential expression of DNMTs contributed to the tissue-specific methylated patterns which caused the diverse gene expression in various tissues. These findings provide significant clues to elucidate the mechanism of the regulation on tissue-specific expression of genes.


Asunto(s)
Islas de CpG/genética , Metilación de ADN , Metilasas de Modificación del ADN/metabolismo , Regulación de la Expresión Génica , Globinas beta/metabolismo , Animales , Células Sanguíneas/metabolismo , Metilasas de Modificación del ADN/genética , Genes Reporteros/genética , Humanos , Isoenzimas/genética , Isoenzimas/metabolismo , Ratones , Ratones Transgénicos , Especificidad de Órganos , Plásmidos/genética , Regiones Promotoras Genéticas/genética , Globinas beta/genética
14.
Zhonghua Yi Xue Yi Chuan Xue Za Zhi ; 26(1): 45-9, 2009 Feb.
Artículo en Chino | MEDLINE | ID: mdl-19199250

RESUMEN

Multiplex ligation-dependent probe amplification (MLPA) is a semiquantitative analysis based on polymerase chain reaction (PCR). It possesses many advantages such as high efficiency, simple operation, low cost and has been wildly applied in researches of diseases associated with copy number variation, point mutation and methylation. Recently, MLPA is combined with DNA chip to become a real high-throughput method and get great improvement in reliability. Here, the progresses of methods and application of MLPA, as well as its limitations are reviewed.


Asunto(s)
Sondas de ADN/análisis , Sondas de ADN/genética , Técnicas de Amplificación de Ácido Nucleico/métodos , Metilación de ADN , Humanos , Técnicas de Amplificación de Ácido Nucleico/instrumentación , Análisis de Secuencia por Matrices de Oligonucleótidos , Polimorfismo de Nucleótido Simple
15.
FEBS J ; 276(1): 155-63, 2009 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19019083

RESUMEN

phiC31 integrase, a site-specific recombinase, can effectively mediate foreign genes bearing an attB sequence integrated into pseudo attP sites. We have previously identified two pseudo attP sites, BpsF1 and BpsM1 from the bovine genome. In this study, two new pseudo attP sites, BF4 and BF10, were discovered using half-nested inverse PCR from cow fibroblasts. The genomic locations of these two pseudo attP sites were identified by direct sequencing and a BLAST search, and it was confirmed that they reside at positions 4q31 and 10q35 by fluorescence in situ hybridization analysis. Subsequently, the distinct integration frequencies of the four pseudo attP sites were examined. The BF4 site was identified as a hotspot where site-specific integration occurred in most of the cell clones examined, accounting for 74% (42/57) of the integration; much more than the integration frequency for BF10 (7%; 4/57), BpsF1 (7%; 4/57) and BpsM1 (0/57). Interestingly, similar to other hotspots identified in the human and mouse genomes, in which transgenes integrated at hotspots result in high expression, the GFP gene integrated at hotspot BF4 was expressed at high levels in cow fibroblasts, as confirmed by fluorescence microscopy and FACS analysis. Furthermore, ELISA showed that the expression level of the GFP gene integrated at the BF4 site averaged approximately 328 microg x mg(-1), which is more than twofold higher than that integrated at the BF10 site. This study suggests that somatic cells carrying a desired gene integrated at the BF4 site can be used as nuclear donors to generate valuable transgenic animals by nuclear transfer.


Asunto(s)
Integrasas/genética , Integrasas/metabolismo , Integración Viral/genética , Animales , Sitios de Ligazón Microbiológica , Bovinos , Cartilla de ADN , Elementos Transponibles de ADN , Genes Reporteros , Genoma , Proteínas Fluorescentes Verdes/genética , Hibridación in Situ , Ratones , Alineación de Secuencia , Homología de Secuencia de Ácido Nucleico , Transgenes
16.
Yi Chuan ; 30(12): 1629-34, 2008 Dec.
Artículo en Chino | MEDLINE | ID: mdl-19073581

RESUMEN

To explore the feasibility and accuracy of MLPA-based array (Array-MLPA) in detecting sex chromosome abnormalities, MLPA probes were designed to target against three gene loci, TSPY (p11.2), PRY (q11), and RBMY (q11.2) in human Y chromosome. Array-MLPA approach was applied to test abnormalities of Y chromosome in 15 patient samples with known karyotypes. The data were compared with karyotyping and PCR analyses. The results showed that the copy number of each site detected by Array-MLPA was basically consistent with karyotyping analysis. Moreover, small deletions of chromosomes that were not found by routine karyotyping analysis were identified by the approach described, which fully agreed with PCR analysis, indicating that Array-MLPA was able to detect small abnormalities of chromosomes that cannot be found by karyotyping analysis. Compared to the routine karyotyping method, Array-MLPA has the advantages of high efficiency and reliability in chromosomal analysis, which has great potential in clinical application of diagnosis of chromosome abnormalities.


Asunto(s)
Aberraciones Cromosómicas , Cromosomas Humanos Y/genética , Técnicas de Amplificación de Ácido Nucleico/métodos , Humanos , Cariotipificación , Reacción en Cadena de la Polimerasa
17.
Hum Mutat ; 29(1): 190-7, 2008 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-17854090

RESUMEN

Multiplex ligation-dependent probe amplification (MLPA) is widely used to screen genes of interest for deletions and duplications. Since MLPA is usually based on size-separation of the amplification products, the maximum number of target sequences that can be screened in parallel is usually limited to approximately 40. We report the design of a robust array-based MLPA format that uses amplification products of essentially uniform size (100-120 bp) and distinguishes between them by virtue of incorporated tag sequences. We were thus able to increase probe complexity to 124, with very uniform product yields and signals that have a low coefficient of variance. The assay designed was used to screen the largest set studied so far (249 patients) of unrelated Duchenne muscular dystrophy (DMD) cases from the Chinese population. In a blind study we correctly assigned 98% of the genotypes and detected rearrangements in 181 cases (73%); i.e., 163 deletions (65%), 13 duplications (5%), and five complex rearrangements (2%). Although this value is significantly higher for Chinese patients than previously reported, it is similar to that found for other populations. The location of the rearrangements (76% in the major deletion hotspot) is also in agreement with other findings. The 96-well flow-through microarray system used in this research provides high-throughput and speed; hybridization can be completed in 5 to 30 minutes. Since array processing and data analysis are fully automated, array-MLPA should be easy to implement in a standard diagnostic laboratory. The universal array can be used to analyze any tag-modified MLPA probe set.


Asunto(s)
Eliminación de Gen , Duplicación de Gen , Pruebas Genéticas/métodos , Distrofia Muscular de Duchenne/diagnóstico , Distrofia Muscular de Duchenne/genética , Técnicas de Amplificación de Ácido Nucleico/métodos , Femenino , Humanos , Masculino
18.
Yi Chuan ; 29(12): 1429-33, 2007 Dec.
Artículo en Chino | MEDLINE | ID: mdl-18065375

RESUMEN

Oocyte development and maturation is a complicated process. The nuclear maturation and cytoplasmic maturation must synchronize which can ensure normal oocyte fertilization and following development. Mitochondrial is the most important cellular organell in cytoplasm, and the variation of its distribution during oocyte maturation, the capacity of OXPHOS generating ATP as well as the content or copy number or transcription level of mitochondrial DNA play an important role in oocyte development and maturation. Therefore, the studies on the variation of mitochondrial distribution, function and mitochondrial DNA could enhance our understanding of the physiology of reproduction and provide new insight to solve the difficulties of assisted reproduction as well as cloning embryo technology.


Asunto(s)
Mitocondrias/metabolismo , Oocitos/citología , Oocitos/crecimiento & desarrollo , Adenosina Trifosfato/metabolismo , Animales , ADN Mitocondrial/genética , ADN Mitocondrial/metabolismo , Humanos , Mitocondrias/genética , Oocitos/metabolismo
19.
Hum Mol Genet ; 16(21): 2616-25, 2007 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-17716993

RESUMEN

The beta-thalassemia is associated with abnormality in beta-globin gene, leading to imbalanced synthesis of alpha-/beta-globin chains. Consequently, the excessive free alpha-globin chains precipitate to the erythrocyte membrane, resulting in hemolytic anemia. We have explored post-transcriptional strategies aiming at alpha-globin reduction and beta-globin enrichment on beta(654) (Hbb(th-4)/Hbb(+)) mouse, carrying a human splicing-deficient beta-globin allele (Hbb(th-4)). Lentiviral vectors of short hairpin RNA (shRNA) targeting alpha-globin and/or antisense RNA facilitating beta-globin correct splicing were microinjected into beta(654) single-cell embryos. Three transgenic strains were generated, as alpha(i)-Hbb(th-4)/Hbb(+)(shRNA), beta(a)-Hbb(th-4)/Hbb(+)(antisense) and alpha(i)beta(a)-Hbb(th-4)/Hbb(+)(both shRNA and antisense). Without notable abnormalities, all the founders and their offsprings showed sustained amelioration of hematologic parameters, ineffective erythropoiesis and extramedullary hematopoiesis. Augmented effects appeared in alpha(i)beta(a)-Hbb(th-4)/Hbb(+), which correlated with a better-balanced alpha-/beta-globin mRNA level. Among the transgenic mice integrated with shRNA and antisense RNA, one homozygous mouse (Hbb(th-4)/Hbb(th-4)) had been viable, and the 3-week survival rate for heterozygotes (Hbb(th-4)/Hbb(+)) was 97%, compared with 45.4% for untreated. Our data have demonstrated the feasibility of techniques for beta-thalassemia therapy by balancing the synthesis of alpha-/beta-globin chains.


Asunto(s)
Terapia Genética/métodos , Globinas/antagonistas & inhibidores , ARN sin Sentido/genética , ARN Interferente Pequeño/genética , Talasemia beta/terapia , Anemia/terapia , Animales , Médula Ósea/patología , Eritropoyesis/genética , Expresión Génica , Vectores Genéticos/genética , Globinas/genética , Hemoglobinas/genética , Humanos , Lentivirus/genética , Ratones , Ratones Transgénicos , Fenotipo , Empalme del ARN/genética
20.
Biochem Genet ; 44(7-8): 349-60, 2006 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-17028784

RESUMEN

To improve the available values of transgenic animals, we produced a mutant human coagulation factor IX minigene (including cDNA and intron I) with arginine at 338 changed to alanine (R338A-hFIX) by using a direct mutation technique. The R338A-hFIX minigene was then cloned into a plasmid carrying the goat beta-casein promoter to get a mammary gland-specific expression vector. The clotting activity in the supernatant of the transfected HC-11 cells increased to approximately three times more than that of wild-type hFIX. Nine transgenic mice (three females and six males) were produced, and the copy number of the foreign gene was very different, ranging from 1 to 43 in different lines. ELISA, Western blot, and clotting assay experiments showed that the transgenic mice could express R338A-hFIX, showing higher average levels of clotting activity than wild-type hFIX in the milk (103.76% vs. 49.95%). The highest concentration and clotting activity of hFIX reached 26 mug/mL and 1287% in one founder (F(0)-7), which was over 10 times higher than that in human plasma. Furthermore, RT-PCR, APTT assay, and histological analysis indicated that hFIX was expressed specifically in the mammary gland without affecting the intrinsic coagulation pathway and physiologic performance of the local tissue.


Asunto(s)
Factor IX/genética , Factor IX/metabolismo , Mutación , Animales , Secuencia de Bases , Caseínas/genética , Línea Celular , Femenino , Regulación de la Expresión Génica , Ingeniería Genética/métodos , Cabras , Humanos , Hibridación Fluorescente in Situ , Glándulas Mamarias Animales , Ratones , Ratones Transgénicos , Leche/metabolismo , Datos de Secuencia Molecular , Reacción en Cadena de la Polimerasa/métodos , Regiones Promotoras Genéticas , Tiempo de Coagulación de la Sangre Total
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA
...