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1.
Vet World ; 15(8): 1943-1953, 2022 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-36313849

RESUMEN

Background and Aim: In tropical and subtropical countries, ixodid ticks are among livestock's most economically important ectoparasites. Although Nguni cattle from South Africa have adapted to harsh environments, it is unknown whether they will be resistant to ticks, and the diseases carried by ticks under various climatic conditions. Therefore, this study aimed to compare tick load and estimate the prevalence of different tick species among Nguni cattle under different environmental conditions. Materials and Methods: Tick counts were conducted monthly under natural challenges over 2 years on 586 Nguni cattle located at ARC-Roodeplaat and Loskop farms (warmer climate), Mukhuthali Nguni Community and the University of Fort Hare farms (cooler climate). The generalized linear model procedure of the Statistical Analysis System was used to analyze the data. It fitted the location (farm), sex, year, month or season, and animal age as covariates. Results: The tick species (relative prevalence) observed were as follows: Amblyomma hebraeum (42%), Rhipicephalus evertsi (22%), Rhipicephalus (Boophilus) spp. (16%), Rhipicephalus appendiculatus (11%), Hyalomma marginatum (5%), and Rhipicephalus simus (4%). Tick infestation was significantly affected by location, season, year, month of the tick counting and age of the animal. Loskop farm had the highest tick count (m = 30.69) and showed the largest variation in tick count. Compared to the other seasons, higher tick counts were seen during the hot-dry (September-November) and hot-wet (December-February) seasons. A. hebraeum was the dominant tick species across all four farms, followed by R. evertsi. The perianal region (under the tail head), the perineum and the belly body locations were the most preferred tick attachment sites. Conclusion: These results provide useful information for developing appropriate control strategies for ticks and tick-borne diseases in these provinces of South Africa. Further work must investigate the feasibility of genetic improvement for tick resistance.

2.
Nat Commun ; 11(1): 343, 2020 01 17.
Artículo en Inglés | MEDLINE | ID: mdl-31953380

RESUMEN

The extent to which the impact of regulatory genetic variants may depend on other factors, such as the expression levels of upstream transcription factors, remains poorly understood. Here we report a framework in which regulatory variants are first aggregated into sets, and using these as estimates of the total cis-genetic effects on a gene we model their non-additive interactions with the expression of other genes in the genome. Using 1220 lymphoblastoid cell lines across platforms and independent datasets we identify 74 genes where the impact of their regulatory variant-set is linked to the expression levels of networks of distal genes. We show that these networks are predominantly associated with tumourigenesis pathways, through which immortalised cells are able to rapidly proliferate. We consequently present an approach to define gene interaction networks underlying important cellular pathways such as cell immortalisation.


Asunto(s)
Epistasis Genética/genética , Redes Reguladoras de Genes/genética , Linfocitos , Línea Celular , Proliferación Celular , Genotipo , Haplotipos , Humanos , Linfocitos/metabolismo , Modelos Genéticos
3.
Anim Genet ; 50(3): 311-314, 2019 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-30983012

RESUMEN

Genome-wide association studies (GWASes) have become a powerful tool for identifying genomic regions associated with important traits in livestock. Milk production traits in dairy sheep are measured at different time points during their life span. Using phenotypic data generated from longitudinal traits could improve the power of association studies but until now have received less attention in GWASes as a methodology and has not been implemented. The aim of this study was to carry out a GWAS for milk production traits in Valle del Belice sheep using repeated measures. After quality control, 469 ewes and 37 228 SNPs were retained for the analysis, and phenotypic data included 5586 test-day records for five milk production traits (milk yield, MY; fat yield and percentage, FY and F%; protein yield and percentage, PY and P%). Nine SNPs located within or close to known genes were found to be associated with milk production traits. In particular, rs398340969, associated with both milk yield and protein yield, is located within the DCPS gene. In addition, rs425417915 and rs417079368, both associated with both fat percentage and protein percentage, are located within the TTC7B gene and at 0.37 Mb within the SUCNR1 gene respectively. In summary, the use of repeated records was beneficial for mapping genomic regions affecting milk production traits in the Valle del Belice sheep.


Asunto(s)
Estudio de Asociación del Genoma Completo/veterinaria , Leche , Oveja Doméstica/genética , Oveja Doméstica/fisiología , Animales , Femenino , Polimorfismo de Nucleótido Simple , Oveja Doméstica/clasificación
4.
Trop Anim Health Prod ; 49(6): 1201-1210, 2017 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-28687941

RESUMEN

The objective of the study was to characterise genetic parameters across months for different tick species and anatomical locations in South African Nguni cattle. Tick counts were conducted monthly, over a 2-year period, on 586 Nguni cattle under natural infestation, from four herds located in different provinces of South Africa. The counts were recorded for six species of ticks (Amblyomma hebraeum, Rhipicephalus evertsi evertsi, Rhipicephalus decoleratus and microplus (Boofilids), Rhipicephalus appendiculatus, Rhipicephalus simus and Hyalomma marginatum) attached on eight anatomical locations on the animals and were summed by species and anatomical location. Heritability estimates, phenotypic and genetic correlations were estimated on a monthly basis using mixed linear models, fitting univariate and bivariate sire models. Fixed effects considered were location, sex, year and age as a covariate. Tick counts were higher in the hot months, and A. hebraeum was the most dominant tick species. Heritability estimates for tick count varied by month and trait and ranged from 0 to 0.89. Genetic correlations were mostly positive, and low to high, with some negative correlations with high standard error. Phenotypic correlations were low to moderate. In general, high genetic correlations were observed between whole body count and the anatomical location counts, suggesting that it may not be necessary to conduct whole body counts. Counts from the belly and perineum appeared to be the most suitable surrogate traits for whole body count. These findings provide useful information for developing strategies for the practical implementation of genetic selection, as a supplement to the traditional tick control measures.


Asunto(s)
Enfermedades de los Bovinos/genética , Ixodidae/fisiología , Fenotipo , Infestaciones por Garrapatas/veterinaria , Animales , Bovinos , Enfermedades de los Bovinos/epidemiología , Enfermedades de los Bovinos/parasitología , Femenino , Masculino , Prevalencia , Sudáfrica/epidemiología , Especificidad de la Especie , Infestaciones por Garrapatas/epidemiología , Infestaciones por Garrapatas/genética , Infestaciones por Garrapatas/parasitología
5.
Small Rumin Res ; 143: 75-83, 2016 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-27766016

RESUMEN

A longitudinal study was conducted in low-input low-output farming systems to determine the prevalence of gastrointestinal parasitic infections in different age groups, sex and associated risk factors in goats. A total of 580 indigenous goats were randomly selected in areas representing the five agro-ecological regions of Zimbabwe in the dry and wet seasons. Blood and faecal samples were collected from each animal and egg/oocyst per gram of faeces (epg/opg), larval culture, and packed cell volumes (PCV) were determined. Factors affecting parasitic infections were evaluated. Highest prevalence was determined for Eimeria oocysts (43%), strongyles (31%) and lower levels in trematodes and cestodes. Parasites identified were Haemonchus, Strongyloides and Oesophagostomum. Area, season, sex and age significantly influenced patterns of gastrointestinal infections (P < 0.05). Cannonical correlations indicated that parasite species composition varied by area and impacts of risk factors also differed. Risk of infection was very high for goats sampled in Natural regions (NR) I, II, III (OR = 6.6-8.2; P < 0.05) as compared to those in NR IV and V. Highest helminths and Eimeria infections were observed in the wet vs. dry season (P < 0.05). Young animals were more susceptible to parasitic infections (P < 0.05). Prevalence was higher in males than females, with odds of infection for males being almost three times to that for females (P < 0.0001). Knowledge concerning gastrointestinal helminth biology and epidemiological infection patterns caused by these parasites is essential in the development of appropriate control strategies and this has a potential to reduce production losses.

6.
Vet Parasitol ; 225: 19-28, 2016 Jul 30.
Artículo en Inglés | MEDLINE | ID: mdl-27369571

RESUMEN

The control of gastrointestinal nematodes (GIN) is mainly based on the use of drugs, grazing management, use of copper oxide wire particles and bioactive forages. Resistance to anthelmintic drugs in small ruminants is documented worldwide. Host genetic resistance to parasites, has been increasingly used as a complementary control strategy, along with the conventional intervention methods mentioned above. Genetic diversity in resistance to GIN has been well studied in experimental and commercial flocks in temperate climates and more developed economies. However, there are very few report outputs from the more extensive low-input/output smallholder systems in developing and emerging countries. Furthermore, results on quantitative trait loci (QTL) associated with nematode resistance from various studies have not always been consistent, mainly due to the different nematodes studied, different host breeds, ages, climates, natural infections versus artificial challenges, infection level at sampling periods, among others. The increasing use of genetic markers (Single Nucleotide Polymorphisms, SNPs) in GWAS or the use of whole genome sequence data and a plethora of analytic methods offer the potential to identify loci or regions associated nematode resistance. Genomic selection as a genome-wide level method overcomes the need to identify candidate genes. Benefits in genomic selection are now being realised in dairy cattle and sheep under commercial settings in the more advanced countries. However, despite the commercial benefits of using these tools, there are practical problems associated with incorporating the use of marker-assisted selection or genomic selection in low-input/output smallholder farming systems breeding schemes. Unlike anthelmintic resistance, there is no empirical evidence suggesting that nematodes will evolve rapidly in response to resistant hosts. The strategy of nematode control has evolved to a more practical manipulation of host-parasite equilibrium in grazing systems by implementation of various strategies, in which improvement of genetic resistance of small ruminant should be included. Therefore, selection for resistant hosts can be considered as one of the sustainable control strategy, although it will be most effective when used to complement other control strategies such as grazing management and improving efficiency of anthelmintics currently.


Asunto(s)
Cruzamiento , Interacciones Huésped-Parásitos/genética , Infecciones por Nematodos/veterinaria , Rumiantes/parasitología , Animales , Variación Genética , Nematodos , Infecciones por Nematodos/genética , Infecciones por Nematodos/prevención & control
7.
Ticks Tick Borne Dis ; 7(3): 487-97, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26897394

RESUMEN

Ticks and tick-borne diseases are among the main causes of economic loss in the South African cattle industry through high morbidity and mortality rates. Concerns of the general public regarding chemical residues may tarnish their perceptions of food safety and environmental health when the husbandry of cattle includes frequent use of acaricides to manage ticks. The primary objective of this study was to identify single nucleotide polymorphism (SNP) markers associated with host resistance to ticks in South African Nguni cattle. Tick count data were collected monthly from 586 Nguni cattle reared in four herds under natural grazing conditions over a period of two years. The counts were recorded for six species of ticks attached in eight anatomical locations on the animals and were summed by species and anatomical location. This gave rise to 63 measured phenotypes or traits, with results for 12 of these traits being reported here. Tick count (x) data were transformed using log10(x+1) and the resulting values were examined for normality. DNA was extracted from hair and blood samples and was genotyped using the Illumina BovineSNP50 assay. After quality control (call rate >90%, minor allele frequency >0.02), 40,436 SNPs were retained for analysis. Genetic parameters were estimated and association analysis for tick resistance was carried out using two approaches: a genome-wide association (GWA) analysis using the GenABEL package and a regional heritability mapping (RHM) analysis. The Bonferroni genome-wide (P<0.05) corrected significance threshold was 1.24×10(-6), with 2.47×10(-5) as the suggestive significance threshold (P<0.10) (i.e., one false positive per genome scan) in the GWA analysis. Likelihood ratio test (LRT) thresholds for genome-wide and suggestive significance were 13.5 and 9.15 for the RHM analysis. Six ixodid tick species were identified, with Amblyomma hebraeum (the vector for Heartwater disease) being the dominant species. Heritability estimates (h(2)) from the fitted animal and sire models ranged from 0.02±0.00 to 0.17±0.04 for the transformed tick count data. Several genomic regions harbouring quantitative trait loci (QTL) were identified for different tick count traits by both the GWA and RHM approaches. Three genome-wide significant regions on chromosomes 7, 10 and 19 were identified for total tick count on the head, total body A. hebraeum tick count and total A. hebraeum on the perineum region, respectively. Additional regions significant at the suggestive level were identified on chromosomes 1, 3, 6, 7, 8, 10, 11, 12, 14, 15, 17, 19 and 26 for several of the traits. The GWA approach identified more genomic regions than did the RHM approach. The chromosomal regions identified here as harbouring QTL underlying variation in tick burden form the basis for further analyses to identify specific candidate genes and polymorphisms related to cattle tick resistance and provide the potential for marker-assisted selection in Nguni cattle.


Asunto(s)
Enfermedades de los Bovinos/inmunología , Resistencia a la Enfermedad/genética , Sitios de Carácter Cuantitativo , Carácter Cuantitativo Heredable , Infestaciones por Garrapatas/inmunología , Infestaciones por Garrapatas/veterinaria , Alelos , Animales , Bovinos , Enfermedades de los Bovinos/genética , Enfermedades de los Bovinos/parasitología , Mapeo Cromosómico , Cromosomas de los Mamíferos/química , ADN/genética , ADN/inmunología , Femenino , Frecuencia de los Genes , Estudio de Asociación del Genoma Completo , Genotipo , Masculino , Carga de Parásitos , Fenotipo , Polimorfismo de Nucleótido Simple , Rhipicephalus/clasificación , Rhipicephalus/genética , Sudáfrica , Infestaciones por Garrapatas/genética , Infestaciones por Garrapatas/parasitología
8.
Animal ; 8(4): 520-8, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24636823

RESUMEN

Genomic prediction utilizes single nucleotide polymorphism (SNP) chip data to predict animal genetic merit. It has the advantage of potentially capturing the effects of the majority of loci that contribute to genetic variation in a trait, even when the effects of the individual loci are very small. To implement genomic prediction, marker effects are estimated with a training set, including individuals with marker genotypes and trait phenotypes; subsequently, genomic estimated breeding values (GEBV) for any genotyped individual in the population can be calculated using the estimated marker effects. In this study, we aimed to: (i) evaluate the potential of genomic prediction to predict GEBV for nematode resistance traits and BW in sheep, within and across populations; (ii) evaluate the accuracy of these predictions through within-population cross-validation; and (iii) explore the impact of population structure on the accuracy of prediction. Four data sets comprising 752 lambs from a Scottish Blackface population, 2371 from a Sarda×Lacaune backcross population, 1000 from a Martinik Black-Belly×Romane backcross population and 64 from a British Texel population were used in this study. Traits available for the analysis were faecal egg count for Nematodirus and Strongyles and BW at different ages or as average effect, depending on the population. Moreover, immunoglobulin A was also available for the Scottish Blackface population. Results show that GEBV had moderate to good within-population predictive accuracy, whereas across-population predictions had accuracies close to zero. This can be explained by our finding that in most cases the accuracy estimates were mostly because of additive genetic relatedness between animals, rather than linkage disequilibrium between SNP and quantitative trait loci. Therefore, our results suggest that genomic prediction for nematode resistance and BW may be of value in closely related animals, but that with the current SNP chip genomic predictions are unlikely to work across breeds.


Asunto(s)
Crianza de Animales Domésticos/métodos , Marcadores Genéticos , Ovinos/genética , Animales , Peso Corporal , Cruzamiento/métodos , Femenino , Desequilibrio de Ligamiento , Masculino , Nematodos/aislamiento & purificación , Infecciones por Nematodos/genética , Infecciones por Nematodos/veterinaria , Análisis de Secuencia por Matrices de Oligonucleótidos/veterinaria , Polimorfismo de Nucleótido Simple , Carácter Cuantitativo Heredable , Reproducibilidad de los Resultados , Enfermedades de las Ovejas/genética
9.
J Anim Breed Genet ; 131(6): 426-36, 2014 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-24397290

RESUMEN

Gastrointestinal nematode infections are one of the main health/economic issues in sheep industries, worldwide. Indicator traits for resistance such as faecal egg count (FEC) are commonly used in genomic studies; however, published results are inconsistent among breeds. Meta (or joint)-analysis is a tool for aggregating information from multiple independent studies. The aim of this study was to identify loci underlying variation in FEC, as an indicator of nematode resistance, in a joint analysis using data from three populations (Scottish Blackface, Sarda × Lacaune and Martinik Black-Belly × Romane), genotyped with the ovine 50k SNP chip. The trait analysed was the average animal effect for Strongyles and Nematodirus FEC data. Analyses were performed with regional heritability mapping (RHM), fitting polygenic effects with either the whole genomic relationship matrix or matrices excluding the chromosome being interrogated. Across-population genomic covariances were set to zero. After quality control, 4123 animals and 38 991 SNPs were available for the analysis. RHM identified genome-wide significant regions on OAR4, 12, 14, 19 and 20, with the latter being the most significant. The OAR20 region is close to the major histocompatibility complex, which has often been proposed as a functional candidate for nematode resistance. This region was significant only in the Sarda × Lacaune population. Several other regions, on OAR1, 3, 4, 5, 7, 12, 19, 20 and 24, were significant at the suggestive level.


Asunto(s)
Resistencia a la Enfermedad/genética , Infecciones por Nematodos/veterinaria , Enfermedades de las Ovejas/genética , Animales , Cruzamiento , Europa (Continente) , Heces/parasitología , Genotipo , Infecciones por Nematodos/genética , Infecciones por Nematodos/inmunología , Recuento de Huevos de Parásitos , Polimorfismo de Nucleótido Simple , Ovinos/genética , Ovinos/parasitología , Enfermedades de las Ovejas/inmunología
10.
Anim Genet ; 45(2): 256-66, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24303943

RESUMEN

Italy counts several sheep breeds, arisen over centuries as a consequence of ancient and recent genetic and demographic events. To finely reconstruct genetic structure and relationships between Italian sheep, 496 subjects from 19 breeds were typed at 50K single nucleotide polymorphism loci. A subset of foreign breeds from the Sheep HapMap dataset was also included in the analyses. Genetic distances (as visualized either in a network or in a multidimensional scaling analysis of identical by state distances) closely reflected geographic proximity between breeds, with a clear north-south gradient, likely because of high levels of past gene flow and admixture all along the peninsula. Sardinian breeds diverged more from other breeds, a probable consequence of the combined effect of ancient sporadic introgression of feral mouflon and long-lasting genetic isolation from continental sheep populations. The study allowed the detection of previously undocumented episodes of recent introgression (Delle Langhe into the endangered Altamurana breed) as well as signatures of known, or claimed, historical introgression (Merino into Sopravissana and Gentile di Puglia; Bergamasca into Fabrianese, Appenninica and, to a lesser extent, Leccese). Arguments that would question, from a genomic point of view, the current breed classification of Bergamasca and Biellese into two separate breeds are presented. Finally, a role for traditional transhumance practices in shaping the genetic makeup of Alpine sheep breeds is proposed. The study represents the first exhaustive analysis of Italian sheep diversity in an European context, and it bridges the gap in the previous HapMap panel between Western Mediterranean and Swiss breeds.


Asunto(s)
Variación Genética , Genoma , Filogeografía , Ovinos/genética , Animales , Cruzamiento , Genotipo , Italia , Polimorfismo de Nucleótido Simple
11.
Anim Genet ; 44(6): 742-9, 2013 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-23837698

RESUMEN

Historically, sheep have been selectively bred for desirable traits including wool characteristics. However, recent moves towards extensive farming and reduced farm labour have seen a renewed interest in Easycare breeds. The aim of this study was to quantify the underlying genetic architecture of wool shedding in an Easycare flock. Wool shedding scores were collected from 565 pedigreed commercial Easycare sheep from 2002 to 2010. The wool scoring system was based on a 10-point (0-9) scale, with score 0 for animals retaining full fleece and 9 for those completely shedding. DNA was sampled from 200 animals of which 48 with extreme phenotypes were genotyped using a 50-k SNP chip. Three genetic analyses were performed: heritability analysis, complex segregation analysis to test for a major gene hypothesis and a genome-wide association study to map regions in the genome affecting the trait. Phenotypes were treated as a continuous or binary variable and categories. High estimates of heritability (0.80 when treated as a continuous, 0.65-0.75 as binary and 0.75 as categories) for shedding were obtained from linear mixed model analyses. Complex segregation analysis gave similar estimates (0.80 ± 0.06) to those above with additional evidence for a major gene with dominance effects. Mixed model association analyses identified four significant (P < 0.05) SNPs. Further analyses of these four SNPs in all 200 animals revealed that one of the SNPs displayed dominance effects similar to those obtained from the complex segregation analyses. In summary, we found strong genetic control for wool shedding, demonstrated the possibility of a single putative dominant gene controlling this trait and identified four SNPs that may be in partial linkage disequilibrium with gene(s) controlling shedding.


Asunto(s)
Cruzamiento/métodos , Fenotipo , Selección Genética/genética , Ovinos/genética , Ovinos/fisiología , Lana/crecimiento & desarrollo , Animales , Estudio de Asociación del Genoma Completo , Genotipo , Modelos Lineales , Análisis de Secuencia por Matrices de Oligonucleótidos/veterinaria , Polimorfismo de Nucleótido Simple/genética
12.
Heredity (Edinb) ; 110(5): 420-9, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23512009

RESUMEN

The genetic architecture underlying nematode resistance and body weight in Blackface lambs was evaluated comparing genome-wide association (GWA) and regional heritability mapping (RHM) approaches. The traits analysed were faecal egg count (FEC) and immunoglobulin A activity against third-stage larvae from Teladorsagia circumcincta, as indicators of nematode resistance, and body weight in a population of 752 Scottish Blackface lambs, genotyped with the 50k single-nucleotide polymorphism (SNP) chip. FEC for both Nematodirus and Strongyles nematodes (excluding Nematodirus), as well as body weight were collected at approximately 16, 20 and 24 weeks of age. In addition, a weighted average animal effect was estimated for both FEC and body weight traits. After quality control, 44 388 SNPs were available for the GWA analysis and 42 841 for the RHM, which utilises only mapped SNPs. The same fixed effects were used in both analyses: sex, year, management group, litter size and age of dam, with day of birth as covariate. Some genomic regions of interest for both nematode resistance and body weight traits were identified, using both GWA and RHM approaches. For both methods, strong evidence for association was found on chromosome 14 for Nematodirus average animal effect, chromosome 6 for Strongyles FEC at 16 weeks and chromosome 6 for body weight at 16 weeks. Across the entire data set, RHM identified more regions reaching the suggestive level than GWA, suggesting that RHM is capable of capturing some of the variation not detected by GWA analyses.


Asunto(s)
Peso Corporal/genética , Resistencia a la Enfermedad/genética , Infecciones por Nematodos/veterinaria , Enfermedades de las Ovejas/genética , Oveja Doméstica/genética , Animales , Femenino , Estudio de Asociación del Genoma Completo , Inmunoglobulina A/genética , Masculino , Infecciones por Nematodos/genética , Nematodirus/aislamiento & purificación , Nematodirus/patogenicidad , Ostertagia/patogenicidad , Recuento de Huevos de Parásitos , Polimorfismo de Nucleótido Simple , Ovinos , Enfermedades de las Ovejas/parasitología , Oveja Doméstica/parasitología
13.
Mol Biol Rep ; 39(1): 745-51, 2012 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-21567200

RESUMEN

The aim of this work was to sequence the promoter region of ß-lactoglobulin (BLG) gene in four sheep breeds, in order to identify polymorphisms, infer and analyze haplotypes, and phylogenetic relationship among the Valle del Belice breed and the other three breeds considered as ancestors. Sequencing analysis and alignment of the obtained sequences showed the presence of 36 single nucleotide polymorphisms (SNPs) and one deletion. A total of 22 haplotypes found in "best" reconstruction were inferred considering the 37 polymorphic sites identified. Haplotypes were used for the reconstruction of a phylogenetic tree using the Neighbor-Joining algorithm. The number of polymorphisms identified showed high variability within breeds. Analysis of genetic diversity indexes showed that the Sarda breed presented the lowest nucleotide diversity, whereas the Comisana breed presented the highest one. Comparing the nucleotide diversity among breeds, the highest value was obtained between Valle del Belice and Pinzirita breeds, whereas the lowest one was between Valle del Belice and Sarda breeds. Considering that polymorphisms in the promoter region of BLG gene could have a functional role associated with milk composition, the lowest value of nucleotide diversity between Valle del Belice and Sarda breeds may be related to a higher similarity of milk composition of these two breeds compared to the others. Further analyses will be conducted in order to evaluate the possible correlation between the genetic diversity indexes and the BLG content in milk of our breeds.


Asunto(s)
Variación Genética , Lactoglobulinas/genética , Leche/química , Filogenia , Polimorfismo de Nucleótido Simple/genética , Ovinos/genética , Animales , Secuencia de Bases , Cruzamiento/métodos , Análisis por Conglomerados , Cartilla de ADN/genética , Haplotipos/genética , Modelos Genéticos , Datos de Secuencia Molecular , Regiones Promotoras Genéticas/genética , Alineación de Secuencia , Análisis de Secuencia de ADN , Especificidad de la Especie
14.
Cytogenet Genome Res ; 126(4): 333-47, 2009.
Artículo en Inglés | MEDLINE | ID: mdl-20016133

RESUMEN

In goats, classical genetic studies reported a large number of alleles at the Agouti locus with effects on coat color and pattern distribution. From these early studies, the dominant A(Wt) (white/tan) allele was suggested to cause the white color of the Saanen breed. Here, we sequenced the coding region of the goat ASIP gene in 6 goat breeds (Girgentana, Maltese, Derivata di Siria, Murciano-Granadina, Camosciata delle Alpi, and Saanen), with different coat colors and patterns. Five single nucleotide polymorphisms (SNPs) were identified, 3 of which caused missense mutations in conserved positions of the cysteine-rich carboxy-terminal domain of the protein (p.Ala96Gly, p.Cys126Gly, and p.Val128Gly). Allele and genotype frequencies suggested that these mutations are not associated or not completely associated with coat color in the investigated goat breeds. Moreover, genotyping and sequencing results, deviation from Hardy-Weinberg equilibrium, as well as allele copy number evaluation from semiquantitative fluorescent multiplex PCR, indicated the presence of copy number variation (CNV) in all investigated breeds. To confirm the presence of CNV and evaluate its extension, we applied a bovine-goat cross-species array comparative genome hybridization (aCGH) experiment using a custom tiling array based on bovine chromosome 13. aCGH results obtained for 8 goat DNA samples confirmed the presence of CNV affecting a region of less that 100 kb including the ASIP and AHCY genes. In Girgentana and Saanen breeds, this CNV might cause the A(Wt) allele, as already suggested for a similar structural mutation in sheep affecting the ASIP and AHCY genes, providing evidence for a recurrent interspecies CNV. However, other mechanisms may also be involved in determining coat color in these 2 breeds.


Asunto(s)
Proteína de Señalización Agouti/genética , Variaciones en el Número de Copia de ADN , Cabras/genética , Mutación Missense , Proteína de Señalización Agouti/química , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Cruzamiento , Color , Hibridación Genómica Comparativa , Cabras/anatomía & histología , Humanos , Datos de Secuencia Molecular , Polimorfismo de Nucleótido Simple , Alineación de Secuencia
15.
J Dairy Sci ; 92(12): 6160-6, 2009 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-19923619

RESUMEN

The objectives of this study were to evaluate the effect of somatic cell count (SCC) on functional longevity and to estimate the heritability of functional longevity using survival analysis in Valle del Belice dairy sheep. A total of 4,880 lactations of 2,190 ewes from 11 flocks were used. In this study, SCC was considered as an indication of subclinical mastitis. In case of clinical cases, identified by the technicians at milking time, test-day weights and milk samples of those ewes were not considered. Somatic cells were analyzed as counts, without any transformation, and were grouped in 3 classes based on the observed SCC maximum (mxSCC). The mxSCC classes, expressed as 10(3) cells/mL, were classified as 1 if mxSCC or= 1,000. An increase in SCC was associated with an increased hazard of being culled. Ewes in the highest class of SCC on a test-day had a 20% higher hazard of being culled than those in the lowest class. Therefore, SCC played a role in culling decisions of Valle del Belice dairy sheep farmers. The heritability estimate for functional longevity was 7% on the logarithmic scale and 11% on the real scale, indicating that selection for this trait is possible in sheep. The flock-year-season effect explained 19% of the variation on the logarithmic scale and 27% of the variation on the real scale.


Asunto(s)
Longevidad/genética , Mastitis/veterinaria , Leche/citología , Ovinos/fisiología , Animales , Recuento de Células , Industria Lechera , Femenino , Mastitis/fisiopatología , Modelos Biológicos , Carácter Cuantitativo Heredable , Ovinos/genética , Análisis de Supervivencia
16.
J Dairy Sci ; 91(9): 3687-92, 2008 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-18765627

RESUMEN

In the Mediterranean region, goat milk production is an important economic activity. In the present study, 4 casein genes were genotyped in 5 Sicilian goat breeds to 1) identify casein haplotypes present in the Argentata dell'Etna, Girgentana, Messinese, Derivata di Siria, and Maltese goat breeds; and 2) describe the structure of the Sicilian goat breeds based on casein haplotypes and allele frequencies. In a sample of 540 dairy goats, 67 different haplotypes with frequency >or=0.01 and 27 with frequency >or=0.03 were observed. The most common CSN1S1-CSN2-CSN1S2-CSN3 haplotype for Derivata di Siria and Maltese was FCFB (0.17 and 0.22, respectively), whereas for Argentata dell'Etna, Girgentana and Messinese was ACAB (0.06, 0.23, and 0.10, respectively). According to the haplotype reconstruction, Argentata dell'Etna, Girgentana, and Messinese breeds presented the most favorable haplotype for cheese production, because the casein concentration in milk of these breeds might be greater than that in Derivata di Siria and Maltese breeds. Based on a cluster analysis, the breeds formed 2 main groups: Derivata di Siria, and Maltese in one group, and Argentata dell'Etna and Messinese in the other; the Girgentana breed was between these groups but closer to the latter.


Asunto(s)
Caseínas/genética , Variación Genética , Cabras/genética , Haplotipos/genética , Animales , Cruzamiento , Análisis por Conglomerados , Industria Lechera , Frecuencia de los Genes , Sicilia , Especificidad de la Especie
17.
J Anim Sci ; 86(8): 1758-64, 2008 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-18407992

RESUMEN

The objectives of this study were 1) to estimate the heritability of lamb survival and growth in the Scottish Blackface breed; 2) to examine the relationship between lamb survival and live BW; and 3) to investigate the possibility of using lamb survival in a breeding program for this breed. The data used for the analyses contained information about survival and live BW at different ages on 4,459 animals. The records were collected from 1988 to 2003 in a Scottish Blackface flock. Live BW was recorded every 4 wk from birth to 24 wk. Survival was defined either by perinatal or postnatal mortality (up to weaning at 12 wk), or as cumulative survival to 1, 4, 8, and 12 wk. The pedigree file comprised 1,416 dams and 178 sires. A sire model was used to estimate genetic parameters for binary survival traits. Heritabilities of BW traits, and phenotypic and genetic correlations between BW and between survival and BW were estimated by fitting an animal model. Further, correlations of survival with live BW were estimated by using a Markov chain Monte Carlo threshold model, implemented by Gibbs sampling. The heritability estimates for cumulative lamb survival declined from birth onward (from 0.33 to 0.08), and postnatal survival had a heritability of 0.01. The direct and maternal heritabilities for BW traits ranged from 0.08 to 0.26 and from 0.06 to 0.21, respectively, whereas the maternal environmental component was between 0.04 and 0.16. The genetic correlations between BW traits at different ages were high. The genetic and phenotypic correlations between survival and BW were always positive (ranging from 0.04 to 0.54), so there was no antagonism between these traits. Therefore, it is possible to simultaneously improve both survival and live BW in a breeding program for this breed.


Asunto(s)
Ovinos/crecimiento & desarrollo , Ovinos/genética , Envejecimiento , Animales , Animales Recién Nacidos , Peso Corporal , Femenino , Tamaño de la Camada , Modelos Logísticos , Masculino , Modelos Biológicos , Embarazo , Estudios Retrospectivos , Caracteres Sexuales
18.
J Dairy Sci ; 90(4): 1998-2003, 2007 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-17369241

RESUMEN

A total of 13,066 first-lactation test-day records of 2,277 Valle del Belice ewes from 17 flocks were used to estimate genetic parameters for somatic cell scores (SCS) and milk production traits, using a repeatability test-day animal model. Heritability estimates were low and ranged from 0.09 to 0.14 for milk, fat, and protein yields, and contents. For SCS, the heritability of 0.14 was relatively high. The repeatabilities were moderate and ranged from 0.29 to 0.47 for milk production traits. The repeatability for SCS was 0.36. Flock-test-day explained a large proportion of the variation for milk production traits, but it did not have a big effect on SCS. The genetic correlations of fat and protein yields with fat and protein percentages were positive and high, indicating a strong association between these traits. The genetic correlations of milk production traits with SCS were positive and ranged from 0.16 to 0.31. The results showed that SCS is a heritable trait in Valle del Belice sheep and that single-trait selection for increased milk production will also increase SCS.


Asunto(s)
Lactancia/genética , Leche/citología , Modelos Genéticos , Paridad , Ovinos/fisiología , Animales , Industria Lechera , Femenino , Variación Genética , Masculino , Fenotipo , Embarazo , Ovinos/genética
19.
Clin Exp Obstet Gynecol ; 12(1-2): 26-8, 1985.
Artículo en Inglés | MEDLINE | ID: mdl-4039230

RESUMEN

We examined 102 pregnancies in 59 diabetic women by Department of Gynaecology and Obstetrics of Sassari University from 1974 to 1983, we evaluated pregnancy and labor proceeding, perinative morbidity and mortality. Our issues show a perinative mortality high yet (14.8%), not always comparable to severity of maternal diabetes, that's mainly due to insufficient number of controls undertaken from patients for their por medical education. Recently diabetic pregnant women have getting used to routine controls of metabolic balance, pregnancy evolution and fetal well-being through biochemical and biophysic monitoring; that allows to obtain an improvement of perinative mortality.


Asunto(s)
Muerte Fetal/epidemiología , Mortalidad Infantil , Embarazo en Diabéticas , Adolescente , Adulto , Peso al Nacer , Femenino , Humanos , Recién Nacido , Italia , Persona de Mediana Edad , Embarazo
20.
Clin Exp Obstet Gynecol ; 12(1-2): 33-5, 1985.
Artículo en Inglés | MEDLINE | ID: mdl-2985296

RESUMEN

The Authors treated with vaginal washing of NaHCO3 (Sodium Bicarbonate) 55 patients whose postcoital tests were persistently poor or negative. The cervical pH increase made the test positive in about 30% of cases and three pregnancies occurred. This treatment with NaHCO3 proved to be useful, handy and welcome to patients.


Asunto(s)
Bicarbonatos/administración & dosificación , Infertilidad/terapia , Sodio/administración & dosificación , Motilidad Espermática , Irrigación Terapéutica , Vagina , Cuello del Útero , Coito , Femenino , Humanos , Concentración de Iones de Hidrógeno , Masculino , Embarazo , Bicarbonato de Sodio
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