Genotoxicity in American kestrels in an agricultural landscape in the Baja California peninsula, Mexico.

Raptors as top predators have been used as effective sentinels of environmental stressors in agricultural areas worldwide. Pollutants in agricultural areas have negative effects on top predator populations. Biomarkers such as erythrocyte nuclear abnormalities have been used as an effective measure of genotoxicity caused by exposure-particularly short-term exposure-to pollutants. We took blood samples from 54 wild specimens of American kestrel (Falco sparverius) captured in an agricultural area in Valle de Santo Domingo, Baja California Sur, Mexico in the autumns of 2018 and 2019 (n = 25) and the winters of 2019 and 2020 (n = 29). We prepared and examined blood smears to look for erythrocyte abnormalities as a means to evaluate genotoxicity. The number of abnormality types and the total frequency of abnormalities (MNs and NAs: notched, symmetrically or asymmetrically constricted, displaced, or indented nuclei) per 10,000 erythrocytes were calculated for all the specimens. We found a high frequency of abnormalities in numerous individuals, similar to those found in raptors from highly polluted areas. The best-fit generalized linear model for the number of abnormality types included season-of-the-year as the main significant predictor; the model for the total frequency of abnormalities included season and wing chord, an indicator of body size and health condition, as significant predictors. MNs frequencies were significantly related to season; NAs frequencies were related to season, wing chord length, and coverage of native vegetation around the area where the birds were captured. Abnormalities observed in the autumn closely coincide with the time when agrochemicals are applied in the area, mainly after the rains and during hot spells in late summer and early autumn. Small-sized kestrels showed higher frequencies of NAs, with an additional impact if native vegetation had been cleared for agriculture; this suggests both that resident birds are more exposed, and the observed genotoxicity has a local origin. These results, together with the ecological and physiological characteristics of the American kestrel suggest that this charismatic and widely distributed species might constitute a suitable biomonitor of genotoxicity in rural landscapes.

Islands in the desert for cavity-nesting bees and wasps: Ecology, patterns of diversity, and conservation at oases of Baja California Peninsula.

AIMS: The oases of Baja California Peninsula (BCP) have been proposed as important hotspots of biodiversity that hold an exceptional richness in the middle of desert conditions. We tested the effect of habitat and anthropogenic disturbance on communities of cavity-nesting taxa, with specific emphasis on bees, wasps, and their natural enemies. METHODS: In oases of BCP and desert neighbor environments, trap-nesting taxa were evaluated in response to factors affecting the nest abundance, richness, and community structure. We used statistical models to find correlates of nest abundance and patterns of diversity, as well as ecological analyses to determine the effect of habitat and human disturbance on species diversity and community structure. RESULTS: Solar irradiation, distance to a perennial waterbody and relative humidity influenced the presence of nests, number of brood cells, and parasitism. In general, abundance, species richness, and parasitism were higher in oases, especially in those with less human disturbance. Bees did not discriminate between oases and deserts to nest, whereas mud-daubing wasps were more dependent of oases. The degree of anthropogenic disturbance did not affect the occurrence of parasitism, but it had an adverse effect on the parasitism intensity (number of attacked cells). The community structure was more complex and even in oases and low-disturbed sites. The similarity between sites did not exceed 30%, and the proportion of shared species between oases and deserts varied from 2.7% to 26.6%. MAIN CONCLUSIONS: The oases of Baja California are functioning as mesic islands in the desert, each oasis hosting a unique community of cavity-nesting taxa. About 65% of the nests and 50% of species occurred exclusively in the oasis. Thus, cavity-nesting species that depend on mesic conditions could be threatened if the oases of BCP disappear in the future. Local conditions in the oases and deserts of the BCP are shaping the community structure. However, large-scale factors such as climate can influence the seasonality and occurrence of species within the community of cavity-nesting dwellers. Since habitat loss and fragmentation can degrade the oases' functionality, strategies to maintain the ecosystem services of pollination and biological control should be included in the conservation programs of these fragile habitats.

Disentangling the coexistence strategies of mud-daubing wasp species through trophic analysis in oases of Baja California peninsula.

Species within the same trophic level show different strategies to avoid competition. Among these mechanisms, differences in body size, spatio-temporal segregation, and diet preference often leads to a niche partitioning. Nonetheless, little attention on coexisting predatory insects and their network interactions has been paid. In this study, we analyzed the strategies to avoid competition among three sympatric mud-daubing wasps of the genus Trypoxylon (Hymenoptera: Crabronidae) in oases and their surrounding xeric area from the Baja California peninsula, Mexico. We compared the prey richness, composition and proportion of spider guilds that were captured by the wasps. We tested whether the differences in wasp body size explained the niche breadth, niche overlap and the size of spider prey. We assessed the spider-wasp interactions through a network analysis. With the use of trap-nests, we collected 52 spider species captured by the wasps. Both the guild and species composition of preyed spiders was different between the three wasp species. Differential proportions in the capture of spider guilds and a little diet overlap were found among the wasp species. We found that the wasp body size was positively correlated with prey size, but it was not a proxy of niche breadth. Moreover, the largest wasp species was able to nest in both mesic and xeric habitats, while the two smaller species were restricted to the oases. This study reveals that the diversity of spiders in oases of Baja California peninsula is crucial to maintain highly specialized oasis-dependent wasp species. The niche partitioning between mud-daubing wasps can be shaped by their inherent body size limitations and hunting strategies through foraging specialization for specific spider guilds. Food selection and slight differences in body size reduce competition and allow the coexistence of sympatric wasps. Our study is the first approach exploring the interaction networks between mud-daubing wasps and their spider preys, highlighting new insights into the morphological and ecological factors that shape antagonistic interactions, and allow the coexistence of predators in deserts.

Seagrass Halodule wrightii as a new habitat for the amphioxus Branchiostoma californiense (Cephalochordata, Branchiostomidae) in the southern Gulf of California, Mexico.

The first record of the amphioxus Branchiostoma californiense on seagrass patches of Halodule wrightii in the Gulf of California is reported. Sixty individuals (19 males, 18 females, and 23 undifferentiated) were collected in May 2017 at Bahía Balandra, Gulf of California, from subtidal seagrass patches at a depth of 0.5 m at low tide. The length and weight ranged from 15.88-28.44 mm and from 0.01-0.11 g for females and 11.7-27.9 mm and 0.01-0.09 g for males, respectively. The minimum size of sexually mature individuals was 11.70 mm for males and 15.88 mm for females; 62% of the specimens were sexually mature. Analysis of the total length-weight relationship suggested an allometric growth pattern among females, males and undifferentiated individuals, whereas an analysis of the entire sample suggested an isometric growth pattern. Typical and additional morphological characters were used to identify the amphioxi. High morphological variability between individuals was found, suggesting the presence of several morphotypes. Branchiostoma californiense had been previously reported as exclusively associated with bare sandy areas, but our study shows that this species can also be found in seagrass patches, using them as breeding and feeding grounds. Thus, seagrass patches are evidenced as suitable habitats for amphioxus.

Improving conservation strategies of raptors through landscape ecology analysis: The case of the endemic Cuban Black Hawk.

Raptor species conservation should consider a landscape perspective in order to include habitat requirements associated to large home ranges around nesting sites. Landscape analysis can help to better understand raptor habitat requirements and the degree of tolerance to habitat changes at different scales.We used a landscape ecology perspective to determine the nesting habitat selection of endemic and endangered Cuban Black Hawk, and using ecological niche modeling, we obtained the potential distribution of nests to evaluate the effectiveness of protected areas (PAs) for raptor conservation.Nesting habitat selection was related to breeding success at a landscape scale using data from 27 different nesting sites during 2012-2013 breeding seasons. The potential nesting areas distribution was compared with current officially PAs design in the central region of Cuba.All nests were located in mangrove swamp. Pairs chose nesting sites with low soil-vegetation moisture and low soil reflectance. At the landscape level, they selected low shape complexity of patches and few patches of coastal vegetation around nesting sites which contained similar mangrove patch size and shape. The potential distribution of nests increased close to the coastline. The model predicted a suitable narrow area of 556 km2, and the most favorable nesting area represented 2% of this total. 33% of nests were located within officially natural protected areas while 27% were close to or inside highly threatened areas. A 16% of high to medium suitable nesting habitat overlaps with urban areas. Currently, PAs contain 23% of the nesting area distribution.Our study shows landscape ecology and nest-site selection approach is crucial to evaluate the persistence of Cuban Black Hawk, as environmental variables and human activity can be related to its productivity. This approach can be applied in conservation strategies of island raptors.

Rapid postglacial diversification and long-term stasis within the songbird genus Junco: phylogeographic and phylogenomic evidence.

Natural systems composed of closely related taxa that vary in the degree of phenotypic divergence and geographic isolation provide an opportunity to investigate the rate of phenotypic diversification and the relative roles of selection and drift in driving lineage formation. The genus Junco (Aves: Emberizidae) of North America includes parapatric northern forms that are markedly divergent in plumage pattern and colour, in contrast to geographically isolated southern populations in remote areas that show moderate phenotypic divergence. Here, we quantify patterns of phenotypic divergence in morphology and plumage colour and use mitochondrial DNA genes, a nuclear intron, and genomewide SNPs to reconstruct the demographic and evolutionary history of the genus to infer relative rates of evolutionary divergence among lineages. We found that geographically isolated populations have evolved independently for hundreds of thousands of years despite little differentiation in phenotype, in sharp contrast to phenotypically diverse northern forms, which have diversified within the last few thousand years as a result of the rapid postglacial recolonization of North America. SNP data resolved young northern lineages into reciprocally monophyletic lineages, indicating low rates of gene flow even among closely related parapatric forms, and suggesting a role for strong genetic drift or multifarious selection acting on multiple loci in driving lineage divergence. Juncos represent a compelling example of speciation in action, where the combined effects of historical and selective factors have produced one of the fastest cases of speciation known in vertebrates.

Phylogeography of endemic Xantus' hummingbird (Hylocharis xantusii) shows a different history of vicariance in the Baja California Peninsula.

Studies of phylogeographic patterns provide insight into the processes driving lineage divergence in a particular region. To identify the processes that caused phylogeographic breaks, it is necessary to use historical information and a set of appropriate molecular data to explain current patterns. To understand the influence of geological or ecological processes on the phylogeography of the only species of hummingbird endemic to the Baja California Peninsula, Hylocharis xantusii, mitochondrial DNA sequences of three concatenated genes (Cyt-b, COI and ND2; 2297bp in total) in 100 individuals were analyzed. The spatial analyses of genetic variation showed phylogeographic structure consisting of a north, central and south regions. According to estimated divergence times, two vicariant events are supported, permanent separation of the peninsula and formation of the Gulf of California at 5mya and temporary isolation of the southern region at the Isthmus of La Paz at 3mya. The temporal frame of genetic differentiation of intraspecific haplotypes indicates that 90% of haplotypes diverged within the last 500,000years, with a population expansion 80,000years ago. Only four haplotypes diverged ∼2.2 my and occurred in the south (Hxan_36, 38 and 45), and north (Hxan_45 and 56) regions; only haplotype 45 is shared between south and north populations. These regions also have the most recent haplotypes from 12,500 to 16,200years ago, and together with high levels of genetic diversity, we suggest two refuge areas, the Northern and Southern regions. Our results indicate that the phylogeographic pattern first results from vicariance processes, then is followed by historical and recent climate fluctuations that influenced conditions on the peninsula, and it is also related to oases distribution. This study presents the first investigation of phylogeography of the peninsular' endemic Xantus' hummingbird.

Arsenic and lead contamination in soil and in feathers of three resident passerine species in a semi-arid mining region of the Mexican plateau.

The current study aimed at quantifying arsenic and lead in feathers from three passerine species that are residents from areas exposed to mining activities (Toxostoma curvirostre, Campylorhynchus brunneicapillus, and Melozone fusca). Lead and As contents in bird feathers and in superficial soil samples were measured with AAS. Levels of these metals were compared between sites exposed and unexposed to mining. Possible correlations of As and Pb between superficial soil and bird feathers were also investigated. Soil metal concentrations were significantly higher near mining sites, and metal concentrations in bird feathers showed a behavior similar to those recorded for soil samples. Individual birds from polluted sites had higher mean feather metal concentrations in comparison with non-polluted sites; no differences in metal concentrations were recorded among bird species. This work constitutes a basis for monitoring contaminants, and for future toxicological studies attempting to understand the impact that some mining activities may have on bird populations.

Isolation of 18 microsatellite loci in the desert mistletoe Phoradendron californicum (Santalaceae) via 454 pyrosequencing.

PREMISE OF THE STUDY: Microsatellite primers were developed for the parasitic mistletoe Phoradendron californicum to investigate to what extent population genetic structure depends on host tree distribution within a highly fragmented landscape. • METHODS AND RESULTS: Fourteen unlinked polymorphic and four monomorphic nuclear microsatellite markers were developed using a genomic shotgun pyrosequencing method. A total of 187 alleles plus four monomorphic loci alleles were found in 98 individuals sampled in three populations from the Sonoran Desert in the Baja California peninsula (Mexico). Loci averaged 13.3 alleles per locus (range 4-28), and observed and expected heterozygosities within populations varied from 0.167-0.879 and 0.364-0.932, respectively. • CONCLUSIONS: Levels of polymorphism of the reported markers are adequate for studies of diversity and fragmentation in natural populations of this parasitic plant. Cross-species amplifications in P. juniperinum and P. diguetianum only showed four markers that could be useful in P. diguetianum.

Incidence of organochlorine pesticides and the health condition of nestling ospreys (Pandion haliaetus) at Laguna San Ignacio, a pristine area of Baja California Sur, Mexico.

We identified and quantified organochlorine (OC) pesticide residues in the plasma of 28 osprey (Pandion haliaetus) nestlings from a dense population in Laguna San Ignacio, a pristine area of Baja California Sur, Mexico, during the 2001 breeding season. Sixteen OC pesticides were identified and quantified. α-, ß-, δ- and γ-hexachlorocyclohexane, heptaclor, heptachlor epoxide, endosulfan I and II, endosulfan-sulfate, p,p'-DDE, p,p'-DDD, aldrin, dieldrin, endrin, endrin aldehyde, and endrin ketone were the OCs found in the plasma of nestlings, ranging from 0.002 to 6.856 pg/µl (parts per billion). No differences were found in the concentration of pesticides between genders (P > 0.05). In our work, the concentrations detected in the plasma were lower than those reported to be a threat for the species and that affect the survival and reproduction of birds. The presence of OC pesticides in the remote Laguna San Ignacio osprey population is an indication of the ubiquitous nature of these contaminants. OCs are apparently able to travel long distances from their source to the study area. A significant relationship between hemoglobin and mean corpuscular hemoglobin concentrations and OC concentrations were found suggesting that a potential effect on the health of chicks may exist in this osprey population caused by the OC, e.g. anemia. The total proteins were positively correlated with α-BHC, endosulfan I, and p,p'-DDD. It has been suggested that OC also affects competitive interactions and population status over the long term in vertebrate species, and our results could be used as reference information for comparison with other more exposed osprey populations.

Quantification of low levels of organochlorine pesticides using small volumes (

A solid phase extraction and gas chromatography with negative chemical ionization mass spectrometry in scan mode (GC-NCI-MS) method was developed to identify and quantify for the first time low levels of organochlorine pesticides (OCs) in plasma samples of less than 100 microl from wild birds. The method detection limits ranged from 0.012 to 0.102 pg/microl and the method reporting limit from 0.036 to 0.307 pg/microl for alpha, gamma, beta and delta-hexachlorocyclohexane (HCH), heptachlor, aldrin, heptachlor epoxide, endosulfan I, 1,1-dichloro-2,2-bis(p-chlorophenyl)ethylene (p,p'-DDE), dieldrin, endrin, endosulfan-II, endrin-aldehyde and endosulfan-sulfate. Pesticide levels in small serum samples from individual Falco sparverius, Sturnella neglecta, Mimus polyglottos and Columbina passerina were quantified. Concentrations ranged from not detected (n/d) to 204.9 pg/microl for some OC pesticides. All levels in the food web in and around cultivated areas showed the presence of pesticides notwithstanding the small areas for agriculture existing in the desert of Baja California peninsula.

Results and evaluation of the first study of organochlorine contaminants (PCDDs, PCDFs, PCBs and DDTs), heavy metals and metalloids in birds from Baja California, México.

Organochlorine compounds (OCs) including polychlorinated dibenzo-p-dioxins (PCDDs), dibenzofurans (PCDFs), polychlorinated biphenyls (PCBs) and 1,1-dichloro-2,2-bis(p-chlorophenyl)ethylene (p-p'-DDE), heavy metals (Pb, Cd, Zn, Cu), and arsenic were measured in house sparrows (Passer domesticus) and common ground doves (Columbina passerina) from Baja California Sur, México. Concentrations of PCDD/Fs were low, with 21 pg/g for house sparrows, and 7.7 pg/g for common ground doves. Non-ortho-PCB concentrations in house sparrow and common ground doves were 58 and 254 pg/g, respectively, and are within the highest concentrations reported in species that are in the low levels of food webs. The major differences in organochlorine levels between species were found for ortho-PCBs and DDTs. ortho-PCB levels were higher in the seedeater species, whereas DDT levels were higher in the omnivorous species. Heavy metal levels were far below those associated with negative effects.