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1.
Nanotoxicology ; : 1-27, 2024 May 31.
Artículo en Inglés | MEDLINE | ID: mdl-38821108

RESUMEN

Synthetic dyes play a crucial role in our daily lives, especially in clothing, leather accessories, and furniture manufacturing. Unfortunately, these potentially carcinogenic substances are significantly impacting our water systems due to their widespread use. Dyes from various sources pose a serious environmental threat owing to their persistence and toxicity. Regulations underscore the urgency in addressing this problem. In response to this challenge, metal oxide nanoparticles such as titanium dioxide (TiO2), zinc oxide (ZnO), and iron oxide (Fe3O4) have emerged as intriguing options for dye degradation due to their unique characteristics and production methods. This paper aims to explore the types of nanoparticles suitable for dye degradation, various synthesis methods, and the properties of nanoparticles. The study elaborates on the photocatalytic and adsorption-desorption activities of metal oxide nanoparticles, elucidating their role in dye degradation and their application potential. Factors influencing degradation, including nanoparticle properties and environmental conditions, are discussed. Furthermore, the paper provides relevant case studies, practical applications in water treatment, and effluent treatment specifically in the textile sector. Challenges such as agglomeration, toxicity concerns, and cost-effectiveness are acknowledged. Future advancements in nanomaterial synthesis, their integration with other materials, and their impact on environmental regulations are potential areas for development. In conclusion, metal oxide nanoparticles possess immense potential in reducing dye pollution, and further research and development are essential to define their role in long-term environmental management.

2.
Biomed Mater ; 19(3)2024 Apr 29.
Artículo en Inglés | MEDLINE | ID: mdl-38636498

RESUMEN

Dental cement residues exacerbate peri-implant tissue irritation and peri-implantitis. The present study aims to evaluate the cytotoxicity, physiochemical, optical, and rheological properties of carbon quantum dots (CQDs) impregnated glass ionomer cement (GIC). Surface passivated fluorescent CQDs were synthesized using citric acid via thermal decomposition and blended with GIC. Characterization studies and rheological measurements were made to evaluate their performance. 3D-printed dental implant models cemented with GIC and GIC-CQD were compared to analyze excess cement residues. MTT assay was performed with human dental pulp stem cells (hDPSCs) and statistically analyzed using ANOVA and Tukey's test. CQDs with a particle dimension of ∼2 nm were synthesized. The amorphous property of GIC-CQD was confirmed through XRD. The fluorescence properties of GIC-CQD showed three times higher emission intensity than conventional GIC. GIC-CQD attained maturation with a setting time extended by 64 s than GIC. Cement residue of size 2 mm was detected with a UV light excitation at a distance between 5 to 10 cm. Biocompatibility at 0.125 mg ml-1dilution concentrations of GIC-CQD showed viability greater than 80% to hDPSCs. For the first time, we report that CQDs-impregnated GIC is a unique and cost-effective strategy for in-situ detection of excess cement rapidly using a hand-held device. A novel in-situ rapid detection method enables the dentist to identify residual cement of size less than 2 mm during the implantation. Therefore, GIC-CQD would replace conventional GIC and help in the prevention of peri-implant diseases.


Asunto(s)
Carbono , Pulpa Dental , Cementos de Ionómero Vítreo , Ensayo de Materiales , Puntos Cuánticos , Puntos Cuánticos/química , Humanos , Carbono/química , Cementos de Ionómero Vítreo/química , Pulpa Dental/citología , Supervivencia Celular/efectos de los fármacos , Implantes Dentales , Periimplantitis/prevención & control , Células Madre/citología , Impresión Tridimensional , Materiales Biocompatibles/química , Reología , Ácido Cítrico/química
3.
Environ Res ; 246: 118018, 2024 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-38199472

RESUMEN

Covalent organic frameworks (COF) have emerged as a potential class of materials for a variety of applications in a wide number of sectors including power storage, environmental services, and biological applications due to their ordered and controllable porosity, large surface area, customizable structure, remarkable stability, and diverse electrical characteristics. COF have received a lot of attention in recent years in the field of environmental remediation, It also find its way to eliminate the emerging pollutant from the environment notably pesticide from polluted water. This review more concentrated on the application of COF in pesticide removal by modifying COF structure, COF synthesis and material properties. To increase the adsorption ability and selectivity of the material towards certain pesticides removal, the synthesis of COF involves organic linkers with various functional groups such as amine, carboxylic acid groups etc. The COF have a high degree of stability and endurance make them suitable for intermittent usage in water treatment applications. This review manifests the novel progress where modified COFs employed in a prominent manner to remove pesticides from polluted water. Some examples of COF application in the eradication of pesticides are triformyl phenylene framework functionalized with amine groups has capacity to remove up to 50 mg/l of Organophosphorus - chlorpyrifos. COF modified to improve their photocatalytic capacity to breakdown the pesticide under visible light irradiation. COF tetraphenyl ethylene linked with carboxylic acid group shows efficient photocatalytic degradation of 90% of organochlorine insecticide endosulfan when subjected to visible light. Atrazine and imidacloprid are reduced from 100 ppm to 1 ppm in aqueous solutions by COF based on high adsorption capacity. In addition, the strategies, technique, synthesis and functional group modification design of COF are discussed.


Asunto(s)
Contaminantes Ambientales , Estructuras Metalorgánicas , Plaguicidas , Aminas , Ácidos Carboxílicos
4.
J Genet Eng Biotechnol ; 21(1): 170, 2023 Dec 18.
Artículo en Inglés | MEDLINE | ID: mdl-38108900

RESUMEN

BACKGROUND: Nowadays, farmers are facing a lot of problems for the disposal of banana pseudostem waste after the harvesting of banana. Banana pseudostem is a rich source of fiber, which is an alternative source of other natural and synthetic fibers. The banana fibers are biodegradable, and they are expected to be in great demand in the international market. For the textile industry, fibers were extracted using chemical and mechanical methods, but it leads to damage and affects the quality of fibers. So, this study mainly focused on biosoftening of banana pseudostem fiber using crude enzyme produced from Aspergillus niger which is one of the most predominant fungus which can synthesize industrially applicable enzymes and which can soften the surface of banana pseudostem fiber. Through this, biosoftened banana pseudostem fiber can be produced, and the disposal problem of banana pseudostem can be rectified in an eco-friendly manner. RESULT: The present study was undertaken for the biosoftening of banana pseudostem fiber using crude enzymes isolated from fungal strain. The fungal isolates were subjected to enzyme screening such as cellulase, pectinase, chitinase, peroxidase, and polygalacturonase. The maximum production of enzyme was observed in F2 strain, and it was subjected to crude enzyme production and purification using dialysis and column chromatography. The collected best enzyme fractions were selected for the biosoftening of banana pseudostem fiber. The banana pseudostem fiber was treated with crude enzymes at the time duration of 2, 4, 24, and 48 h. After the treatment, the treated and untreated fibers were evaluated for the mechanical properties and chemical constituent's analysis. The results revealed that the chemical contents were high during 2- and 4-h-treated fibers. After that, chemical constituents were reduced due to the removal of debris by the action of enzymes. The mechanical properties such as breaking load, breaking extension, tenacity, and diameter of fiber were best in the fibers treated for 2 and 4 h. After 4 h due to the removal of chemical constituents the breaking load and tenacity, diameter will be reduced. SEM results proved that the fiber treated at 4th h showed smooth and softened fiber. CONCLUSION: This study proved that the crude enzymes isolated from the Aspergillus niger can be effectively soften and increase the quality of banana pseudostem fiber.

5.
J Obstet Gynaecol ; 41(4): 522-526, 2021 May.
Artículo en Inglés | MEDLINE | ID: mdl-32552304

RESUMEN

The purpose of this study was to assess the knowledge, beliefs, and practice (KBP) of pregnant women on medication use during pregnancy, and to identify the factors influencing KBP. A cross-sectional study was conducted in the Department of Obstetrics & Gynaecology of a tertiary care hospital over a period of nine months. Pregnant women receiving at least one medication were included in the study. A 19-item questionnaire was developed, validated, and used for assessing the KBP of pregnant women. Logistic regression analysis was used to identify the factors influencing the KBP. A total of 422 pregnant women with a mean (SD) age of 24.6 (4.05) years were included in the study. Pregnant women were having less knowledge on 'unsafe medications' and 'important medications' during pregnancy, wrong belief on 'stopping all medications during pregnancy', and less practice of 'asking Pharmacist how to take medications'. It was identified hat the age, education, occupation, and area of living were the factors influencing the knowledge and practice of pregnant women on medication use. This study identified the need for improvement in knowledge and practice of pregnant women who are young, having nil or low level of education, no occupation, and living in rural areas.IMPACT STATEMENTWhat is already known on this subject? Knowledge and beliefs on medication use play a vital role in medication adherence among pregnant women. Crisis in rural healthcare along with socio-demographic conditions and literacy status of Indian women may have contributed to the lack of understanding about use of medications during pregnancy.What the results of this study add? The knowledge of pregnant women was found to be insufficient on 'unsafe medications' and 'important medications' during pregnancy. Majority of the pregnant women believe that it is better for the foetus if they 'stop taking all medications during pregnancy'. 'Not asking Pharmacist how to take medications' is one important practice in India contributes less knowledge on medication use.What the implications are of these findings for clinical practice and/or further research? There is a need for improvement in knowledge and practice of medication use among pregnant women who are young, having nil or low level of education, no occupation, and living in rural areas.


Asunto(s)
Conocimientos, Actitudes y Práctica en Salud , Cumplimiento de la Medicación/psicología , Mujeres Embarazadas/psicología , Atención Prenatal/psicología , Adulto , Estudios Transversales , Femenino , Humanos , India , Embarazo , Encuestas y Cuestionarios , Adulto Joven
6.
J Oral Biol Craniofac Res ; 9(2): 215-220, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31211039

RESUMEN

Oral genodermatoses includes a spectrum of inherited dermatological disorders with varying oral mucosal manifestations. Darier's disease is an autosomal dominant disorder with defect in desmosomal attachment. This case report presents oro cutaneous manifestations of Darier's disease in a 40 year old female patient with a detailed review on etiology, pathogenesis, differential diagnosis and management of the condition.

7.
Case Rep Dent ; 2016: 8130352, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27195156

RESUMEN

For patients who require removal of anterior teeth and their replacement various treatment modalities are available. With advancement in technology and availability of glass/polyethylene fibres, use of natural tooth as pontic with fibre reinforced composite restorations offers the promising results. The present case report describes management of periodontally compromised mandibular anterior tooth using natural tooth pontic with fibre reinforcement. A 1-year follow-up showed that the bridge was intact with good esthetics and no problem was reported.

8.
Biocontrol Sci ; 19(2): 79-84, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24975411

RESUMEN

The present study evaluates the feasibility of using Artemia franciscana in reducing the Ni concentration of synthetic wastewater by the process of bioaccumulation. Metallothionein protein plays a key role in the uptake of nickel by Artemia. Artemia (Brine shrimp) was exposed to an initial nickel concentration of 40 mg/L. Gradual decrease of nickel was observed from 40 mg/L to 5 mg/L with a removal efficiency of 87.5%. The number of organisms were varied to determine the number for the maximum removal efficiency. Metallothionein protein in Artemia was estimated by the silver saturation method. The physical parameters such as pH were maintained in an alkaline condition of 9-10, temperature was maintained at room temperature and salinity at 30-35‰. These were found to be the optimal conditions for the survival and reduction of nickel by Artemia.


Asunto(s)
Artemia/metabolismo , Proteínas de Artrópodos/metabolismo , Metalotioneína/metabolismo , Níquel/aislamiento & purificación , Contaminantes Químicos del Agua/aislamiento & purificación , Animales , Biodegradación Ambiental , Concentración de Iones de Hidrógeno , Cinética , Níquel/metabolismo , Salinidad , Temperatura , Contaminantes Químicos del Agua/metabolismo
9.
J Contemp Dent Pract ; 14(4): 573-7, 2013 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-24309329

RESUMEN

AIM: Aim of this in vitro study was to evaluate the resistance to fracture of vertically fractured and reattached fragments bonded with fiber-reinforced composites. MATERIALS AND METHODS: Root canals of 45 teeth were prepared, and the teeth were intentionally fractured into two separate fragments. Control groups (n = 15 each) consisted unfractured teeth with instrumented and obturated. Fractured teeth were divided into three groups (n = 15) and were attached using (1) dual-cure resin cement (RelyX U100), (2) dual-cure resin cement and polyethylene fiber (Ribbond), (3) dual-cure resin cement and glass fibers (stick-net). Force was applied at a speed of 0.5 mm/min to the root until fracture. RESULTS AND STATISTICAL ANALYSIS: Group 1 (RelyX U100 group) demonstrated lowest fracture resistance. Group 4 (control group) showed highest fracture resistance followed by group 2 (Ribbond group) and group 3 (Stick-Net groups). Statistically no significant difference was there between groups 2, 3 and 4. CONCLUSION: Vertically fractured teeth can be treated by filling the root canal space with dual-cure adhesive resin cement or by adding polyethylene fiber or glass fiber to increase the fracture resistance of the reattached tooth fragments, an alternative to extraction.


Asunto(s)
Diente Premolar/lesiones , Recubrimiento Dental Adhesivo/métodos , Técnica de Perno Muñón/instrumentación , Fracturas de los Dientes/fisiopatología , Raíz del Diente/lesiones , Adolescente , Materiales Dentales/química , Vidrio/química , Humanos , Polietilenos/química , Recurrencia , Cementos de Resina/química , Preparación del Conducto Radicular/métodos , Estrés Mecánico , Fracturas de los Dientes/terapia , Diente no Vital/terapia , Adulto Joven
10.
J Clin Diagn Res ; 7(5): 962-7, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23814756

RESUMEN

AIMS AND OBJECTIVES: (1) To evaluate the role of ultrasonography with colour Doppler in the diagnosis of fascial space infections, (2) To determine the nature, size and extent of the odontogenic infections which involve the primary and secondary fascial spaces of the maxilla and the mandible (3) To evaluate the sensitivity of ultrasonography in determining whether the inflammatory process is in a stage of cellulitis or abscess and to thus determine the appropriate time for a surgical intervention during the course of the infection and to correlate the clinical and radiographic findings with the ultrasonographic findings and (4) to determine the treatment plan. METHODOLOGY: Thirty four patients with odontogenic infections which involved the superficial and the deep fascial spaces of the head and neck were subjected to ultrasonographic examinations over the suspected area in the transverse and axial directions to determine the stage of the infection, its anatomic location and the treatment plan. RESULTS: Ultrasonography showed 95.7% sensitivity and 100% specificity as compared to the clinical and radiographic diagnoses and it proved to be an effective investigation modality in the diagnosis of fascial space infections.

11.
J Contemp Dent Pract ; 13(1): 85-97, 2012 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-22430700

RESUMEN

INTRODUCTION: Transversal slicing system (TSS) of Planmeca PM 2002 CC is a tomographic technique which enables us to take cross-sectional views of jaws. Tomographic imaging modalities are commonly applied to acquire cross-sectional images of the jaws for preimplant assessment of bone. Among the available tomographic imaging modalities, panoramic radiography is the most accessible imaging system. MATERIALS AND METHODS: Study was conducted using 25 mandibles, out of these five were used for linear dimensional accuracy measurement and the rest 20 were utilized to study the details within the mandible. Study was aimed to evaluate dimensional stability in the images using different parameters, such as determination of direction of slice, determination of horizontal and vertical magnification, angular distortion, three dimensional distortion and determination of details. RESULTS: For the direction of slice and for determination of horizontal and vertical magnification change in + 5º to - 5º was in acceptable limit. In determination of details, it was found that there was great discrepancy in readings given by nonradiologist which offset the mean value which was attributed to lack of training for interpretation of the observers. CONCLUSION: 99% of the readings were in the clinically acceptable limits. CLINICAL SIGNIFICANCE: The easy availability, use of routine equipment, the low cost, low radiation dose for cross-sectional radiography make the TSS most preferred modality.


Asunto(s)
Procesamiento de Imagen Asistido por Computador/estadística & datos numéricos , Mandíbula/diagnóstico por imagen , Radiografía Panorámica/estadística & datos numéricos , Tomografía por Rayos X/estadística & datos numéricos , Puntos Anatómicos de Referencia/anatomía & histología , Puntos Anatómicos de Referencia/diagnóstico por imagen , Anatomía Transversal , Artefactos , Cefalometría/estadística & datos numéricos , Humanos , Imagenología Tridimensional/estadística & datos numéricos , Mandíbula/anatomía & histología , Variaciones Dependientes del Observador , Curva ROC , Intensificación de Imagen Radiográfica , Magnificación Radiográfica/estadística & datos numéricos , Reproducibilidad de los Resultados
12.
BMC Res Notes ; 4: 408, 2011 Oct 13.
Artículo en Inglés | MEDLINE | ID: mdl-21996254

RESUMEN

BACKGROUND: Follicle stimulating hormone (FSH) is an important hormone responsible for growth, maturation and function of the human reproductive system. FSH regulates the synthesis of steroid hormones such as estrogen and progesterone, proliferation and maturation of follicles in the ovary and spermatogenesis in the testes. FSH is a glycoprotein heterodimer that binds and acts through the FSH receptor, a G-protein coupled receptor. Although online pathway repositories provide information about G-protein coupled receptor mediated signal transduction, the signaling events initiated specifically by FSH are not cataloged in any public database in a detailed fashion. FINDINGS: We performed comprehensive curation of the published literature to identify the components of FSH signaling pathway and the molecular interactions that occur upon FSH receptor activation. Our effort yielded 64 reactions comprising 35 enzyme-substrate reactions, 11 molecular association events, 11 activation events and 7 protein translocation events that occur in response to FSH receptor activation. We also cataloged 265 genes, which were differentially expressed upon FSH stimulation in normal human reproductive tissues. CONCLUSIONS: We anticipate that the information provided in this resource will provide better insights into the physiological role of FSH in reproductive biology, its signaling mediators and aid in further research in this area. The curated FSH pathway data is freely available through NetPath (http://www.netpath.org), a pathway resource developed previously by our group.

13.
Database (Oxford) ; 2011: bar021, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-21742767

RESUMEN

Receptor activator of nuclear factor-kappa B ligand (RANKL) is a member of tumor necrosis factor (TNF) superfamily that plays a key role in the regulation of differentiation, activation and survival of osteoclasts and also in tumor cell migration and bone metastasis. Osteoclast activation induced by RANKL regulates hematopoietic stem cell mobilization as part of homeostasis and host defense mechanisms thereby linking regulation of hematopoiesis with bone remodeling. Binding of RANKL to its receptor, Receptor activator of nuclear factor-kappa B (RANK) activates molecules such as NF-kappa B, mitogen activated protein kinase (MAPK), nuclear factor of activated T cells (NFAT) and phosphatidyl 3-kinase (PI3K). Although the molecular and cellular roles of these molecules have been reported previously, a systematic cataloging of the molecular events induced by RANKL/RANK interaction has not been attempted. Here, we present a comprehensive reaction map of the RANKL/RANK-signaling pathway based on an extensive manual curation of the published literature. We hope that the curated RANKL/RANK-signaling pathway model would enable new biomedical discoveries, which can provide novel insights into disease processes and development of novel therapeutic interventions.


Asunto(s)
Bases de Datos Factuales , Ligando RANK/metabolismo , Receptor Activador del Factor Nuclear kappa-B/metabolismo , Sistemas de Administración de Bases de Datos , Humanos , Ligando RANK/genética , Receptor Activador del Factor Nuclear kappa-B/genética , Transducción de Señal
14.
J Proteomics Bioinform ; 42011 Oct 29.
Artículo en Inglés | MEDLINE | ID: mdl-24255551

RESUMEN

Human thyroid stimulating hormone (TSH) is a glycoprotein secreted by the anterior part of the pituitary gland. TSH plays an important physiological role in the regulation of hypothalamic-pituitary-thyroid axis by modulating the release of the thyroid hormones from the thyroid gland. It induces iodine uptake by the thyroid, promotes thyroid epithelial differentiation and growth, and protects thyroid cells from apoptosis. Impairment of TSH signal transduction pathway leads to thyroid disorders such as goitre, hypothyroidism and hyperthyroidism, which can have complex clinical manifestations. TSH signaling is largely effected through two separate pathways, the adenylate cyclase and the phospholipase C pathways. In spite of its biomedical importance, a concise signaling map of TSH pathway is not available in the public domain. Therefore, we have generated a detailed signaling map of TSH pathway by systematically cataloging the molecular reactions induced by TSH including protein-protein interactions, post-translational modifications, protein translocation events and activation/inhibition reactions. We have cataloged 40 molecular association events, 42 enzyme-substrate reactions and 16 protein translocation events in TSH signaling pathway resource. Additionally, we have documented 208 genes, which are differentially regulated by TSH. We have provided the details of TSH pathway through NetPath (http://www.netpath.org), which is a publicly available resource for human signaling pathways developed by our group. We have also depicted the map of TSH signaling using NetSlim criteria (http://www.netpath.org/netslim/) and provided pathway maps in Wikipathways (http://www.wikipathways.org/). We anticipate that the availability of TSH pathway as a community resource will enhance further biomedical investigations into the function and effects of this important hormone.

15.
Genome Biol ; 11(1): R3, 2010 Jan 12.
Artículo en Inglés | MEDLINE | ID: mdl-20067622

RESUMEN

We have developed NetPath as a resource of curated human signaling pathways. As an initial step, NetPath provides detailed maps of a number of immune signaling pathways, which include approximately 1,600 reactions annotated from the literature and more than 2,800 instances of transcriptionally regulated genes - all linked to over 5,500 published articles. We anticipate NetPath to become a consolidated resource for human signaling pathways that should enable systems biology approaches.


Asunto(s)
Biología Computacional/métodos , Transducción de Señal , Acceso a la Información , Animales , Apoptosis , Bioquímica/métodos , Movimiento Celular , Bases de Datos Factuales , Humanos , Sistema Inmunológico , Interleucina-2/metabolismo , Modelos Biológicos , Modelos Genéticos , Mapeo de Interacción de Proteínas , Programas Informáticos , Transcripción Genética
16.
Nat Genet ; 38(3): 285-93, 2006 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-16501559

RESUMEN

We present the first analysis of the human proteome with regard to interactions between proteins. We also compare the human interactome with the available interaction datasets from yeast (Saccharomyces cerevisiae), worm (Caenorhabditis elegans) and fly (Drosophila melanogaster). Of >70,000 binary interactions, only 42 were common to human, worm and fly, and only 16 were common to all four datasets. An additional 36 interactions were common to fly and worm but were not observed in humans, although a coimmunoprecipitation assay showed that 9 of the interactions do occur in humans. A re-examination of the connectivity of essential genes in yeast and humans indicated that the available data do not support the presumption that the number of interaction partners can accurately predict whether a gene is essential. Finally, we found that proteins encoded by genes mutated in inherited genetic disorders are likely to interact with proteins known to cause similar disorders, suggesting the existence of disease subnetworks. The human interaction map constructed from our analysis should facilitate an integrative systems biology approach to elucidating the cellular networks that contribute to health and disease states.


Asunto(s)
Proteínas de Caenorhabditis elegans/genética , Proteínas de Drosophila/genética , Proteoma/genética , Proteínas de Saccharomyces cerevisiae/genética , Animales , Caenorhabditis elegans/genética , Dípteros , Drosophila melanogaster , Evolución Molecular , Humanos
17.
Nucleic Acids Res ; 34(Database issue): D411-4, 2006 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-16381900

RESUMEN

Human Protein Reference Database (HPRD) (http://www.hprd.org) was developed to serve as a comprehensive collection of protein features, post-translational modifications (PTMs) and protein-protein interactions. Since the original report, this database has increased to >20 000 proteins entries and has become the largest database for literature-derived protein-protein interactions (>30 000) and PTMs (>8000) for human proteins. We have also introduced several new features in HPRD including: (i) protein isoforms, (ii) enhanced search options, (iii) linking of pathway annotations and (iv) integration of a novel browser, GenProt Viewer (http://www.genprot.org), developed by us that allows integration of genomic and proteomic information. With the continued support and active participation by the biomedical community, we expect HPRD to become a unique source of curated information for the human proteome and spur biomedical discoveries based on integration of genomic, transcriptomic and proteomic data.


Asunto(s)
Bases de Datos de Proteínas , Proteoma/genética , Proteoma/fisiología , Bases de Datos de Proteínas/estadística & datos numéricos , Genómica , Humanos , Internet , Mapeo de Interacción de Proteínas , Isoformas de Proteínas/análisis , Isoformas de Proteínas/genética , Isoformas de Proteínas/fisiología , Procesamiento Proteico-Postraduccional , Proteínas/análisis , Proteínas/genética , Proteínas/fisiología , Proteoma/química , Proteómica , Transducción de Señal , Integración de Sistemas , Interfaz Usuario-Computador
18.
Proteomics ; 5(13): 3531-6, 2005 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-16041672

RESUMEN

Plasma is one of the best studied compartments in the human body and serves as an ideal body fluid for the diagnosis of diseases. This report provides a detailed functional annotation of all the plasma proteins identified to date. In all, gene products encoded by 3778 distinct genes were annotated based on proteins previously published in the literature as plasma proteins and the identification of multiple peptides from proteins under HUPO's Plasma Proteome Project. Our analysis revealed that 51% of these genes encoded more than one protein isoform. All single nucleotide polymorphisms involving protein-coding regions were mapped onto the protein sequences. We found a number of examples of isoform-specific subcellular localization as well as tissue expression. This database is an attempt at comprehensive annotation of a complex subproteome and is available on the web at http://www.plasmaproteomedatabase.org.


Asunto(s)
Proteínas Sanguíneas/química , Proteínas Sanguíneas/genética , Bases de Datos de Proteínas , Proteómica/métodos , Secuencias de Aminoácidos , Biología Computacional/métodos , Genoma Humano , Humanos , Espectrometría de Masas , Péptidos/química , Polimorfismo de Nucleótido Simple , Isoformas de Proteínas , Estructura Terciaria de Proteína , Factores de Tiempo
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