Acute physiological responses to a pyramidal exercise protocol and the associations with skin temperature variation in different body areas.

This study aimed to examine the skin temperature (Tsk) variations in five regions of interest (ROI) to assess whether possible disparities between the ROI's Tsk could be associated with specific acute physiological responses during cycling. Seventeen participants performed a pyramidal load protocol on a cycling ergometer. We synchronously measured Tsk in five ROI with three infrared cameras. We assessed internal load, sweat rate, and core temperature. Reported perceived exertion and calves' Tsk showed the highest correlation (r = -0.588; p < 0.01). Mixed regression models revealed that the heart rate and reported perceived exertion were inversely related to calves' Tsk. The exercise duration was directly associated with the nose tip and calf Tsk but inversely related to the forehead and forearm Tsk. The sweat rate was directly related to forehead and forearm Tsk. The association of Tsk with thermoregulatory or exercise load parameters depends on the ROI. The parallel observation of the face and calf Tsk could indicate simultaneously the observation of acute thermoregulatory needs and individual internal load. The separate Tsk analyses of individual ROI appear more suitable to examine specific physiological response than a mean Tsk of several ROI during cycling.

An exploratory, intra- and interindividual comparison of the deep neural network automatically measured calf surface radiation temperature during cardiopulmonary running and cycling exercise testing: A preliminary study.

Non-invasive and contactless infrared thermography (IRT) measurements have been claimed to indicate acute neural, cardiovascular, and thermoregulatory adaptations during exercise. Due to challenging comparability, reproducibility, and objectivity, investigations considering different exercise types and intensities, and automatic ROI analysis are currently needed. Thus, we aimed to examine surface radiation temperature (Tsr) variations during different exercise types and intensities in the same individuals, ROI, and environmental conditions. Ten healthy, active males performed a cardiopulmonary exercise test on a treadmill in the first week and on a cycling ergometer the following week. Respiration, heart rate, lactate, rated perceived exertion, the mean, minimum, and maximum Tsr of the right calf (CTsr (°C)), and the surface radiation temperature pattern (CPsr) were explored. We executed two-way rmANOVA and Spearman's rho correlation analyses. Across all IRT parameters, mean CTsr showed the highest association to cardiopulmonary parameters (E.g., oxygen consumption: rs = -0.612 (running); -0.663 (cycling); p < .001). A global significant difference of CTsr was identified between all relevant exercise test increments for both exercise-types (p < .001; η2p = .842) and between both exercise-types (p = .045; η2p = .205). Differences in CTsr between running and cycling significantly appeared after a 3-min recovery period, whereas lactate, heart rate, and oxygen consumption were not different. High correlations between the CTsr values extracted manually and the CTsr values processed automatically by a deep neural network were identified. The applied objective time series analysis enables crucial insights into intra- and interindividual differences between both tests. CTsr variations indicate different physiological demands between incremental running and cycling exercise testing. Further studies applying automatic ROI analyses are needed to enable the extensive analysis of inter- and intraindividual factors influencing the CTsr variation during exercise to allow determine the criterion and predictive validity of IRT parameters in exercise physiology.

Motion correction for separate mandibular and cranial movements in cone beam CT reconstructions.

BACKGROUND: Patient motions are a repeatedly reported phenomenon in oral and maxillofacial cone beam CT scans, leading to reconstructions of limited usability. In certain cases, independent movements of the mandible induce unpredictable motion patterns. Previous motion correction methods are not able to handle such complex cases of patient movements. PURPOSE: Our goal was to design a combined motion estimation and motion correction approach for separate cranial and mandibular motions, solely based on the 2D projection images from a single scan. METHODS: Our iterative three-step motion correction algorithm models the two articulated motions as independent rigid motions. First of all, we segment cranium and mandible in the projection images using a deep neural network. Next, we compute a 3D reconstruction with the poses of the object's trajectories fixed. Third, we improve all poses by minimizing the projection error while keeping the reconstruction fixed. Step two and three are repeated alternately. RESULTS: We find that our marker-free approach delivers reconstructions of up to 85% higher quality, with respect to the projection error, and can improve on already existing techniques, which model only a single rigid motion. We show results of both synthetic and real data created in different scenarios. The reconstruction of motion parameters in a real environment was evaluated on acquisitions of a skull mounted on a hexapod, creating a realistic, easily reproducible motion profile. CONCLUSIONS: The proposed algorithm consistently enhances the visual quality of motion impaired cone beam computed tomography scans, thus eliminating the need for a re-scan in certain cases, considerably lowering radiation dosage for the patient. It can flexibly be used with differently sized regions of interest and is even applicable to local tomography.

Towards Exercise Radiomics: Deep Neural Network-Based Automatic Analysis of Thermal Images Captured During Exercise.

Infrared thermography is increasingly applied in sports science due to promising observations regarding changes in skin's surface radiation temperature ( Tsr) before, during, and after exercise. The common manual thermogram analysis limits an objective and reproducible measurement of Tsr. Previous analysis approaches depend on expert knowledge and have not been applied during movement. We aimed to develop a deep neural network (DNN) capable of automatically and objectively segmenting body parts, recognizing blood vessel-associated Tsr distributions, and continuously measuring Tsr during exercise. We conducted 38 cardiopulmonary exercise tests on a treadmill. We developed two DNNs: body part network and vessel network, to perform semantic segmentation of 1 107 855 thermal images. Both DNNs were trained with 263 training and 75 validation images. Additionally, we compare the results of a common manual thermogram analysis with these of the DNNs. Performance analysis identified a mean IoU of 0.8 for body part network and 0.6 for vessel network. There is a high agreement between manual and automatic analysis (r = 0.999; p 0.001; T-test: p = 0.116), with a mean difference of 0.01 °C (0.08). Non-parametric Bland Altman's analysis showed that the 95% agreement ranges between - 0.086 °C and 0.228 °C. The developed DNNs enable automatic, objective, and continuous measurement of Tsr and recognition of blood vessel-associated Tsr distributions in resting and moving legs. Hence, the DNNs surpass previous algorithms by eliminating manual region of interest selection and form the currently needed foundation to extensively investigate Tsr distributions related to non-invasive diagnostics of (patho-)physiological traits in means of exercise radiomics.

Projection-based improvement of 3D reconstructions from motion-impaired dental cone beam CT data.

PURPOSE: Computed tomography (CT) and, in particular, cone beam CT (CBCT) have been increasingly used as a diagnostic tool in recent years. Patient motion during acquisition is common in CBCT due to long scan times. This results in degraded image quality and may potentially increase the number of retakes. Our aim was to develop a marker-free iterative motion correction algorithm that works on the projection images and is suitable for local tomography. METHODS: We present an iterative motion correction algorithm that allows the patient's motion to be detected and taken into account during reconstruction. The core of our method is a fast GPU-accelerated three-dimensional reconstruction algorithm. Assuming rigid motion, motion correction is performed by minimizing a pixel-wise cost function between all captured x-ray images and parameterized projections of the reconstructed volume. RESULTS: Our method is marker-free and requires only projection images. Furthermore, it can deal with local tomography data. We demonstrate the effectiveness of our approach on both simulated and real motion-beset patient images. The results show that our new motion correction algorithm leads to accurate reconstructions with sharper edges, better contrasts and more detail. CONCLUSIONS: The presented method allows for correction of patient motion with observable improvements in image quality compared to uncorrected reconstructions. Potentially, this may reduce the number of retakes caused by corrupted reconstructions due to patient movements.

A method for automatic forensic facial reconstruction based on dense statistics of soft tissue thickness.

In this paper, we present a method for automated estimation of a human face given a skull remain. Our proposed method is based on three statistical models. A volumetric (tetrahedral) skull model encoding the variations of different skulls, a surface head model encoding the head variations, and a dense statistic of facial soft tissue thickness (FSTT). All data are automatically derived from computed tomography (CT) head scans and optical face scans. In order to obtain a proper dense FSTT statistic, we register a skull model to each skull extracted from a CT scan and determine the FSTT value for each vertex of the skull model towards the associated extracted skin surface. The FSTT values at predefined landmarks from our statistic are well in agreement with data from the literature. To recover a face from a skull remain, we first fit our skull model to the given skull. Next, we generate spheres with radius of the respective FSTT value obtained from our statistic at each vertex of the registered skull. Finally, we fit a head model to the union of all spheres. The proposed automated method enables a probabilistic face-estimation that facilitates forensic recovery even from incomplete skull remains. The FSTT statistic allows the generation of plausible head variants, which can be adjusted intuitively using principal component analysis. We validate our face recovery process using an anonymized head CT scan. The estimation generated from the given skull visually compares well with the skin surface extracted from the CT scan itself.

A Region-Based Gauss-Newton Approach to Real-Time Monocular Multiple Object Tracking.

We propose an algorithm for real-time 6DOF pose tracking of rigid 3D objects using a monocular RGB camera. The key idea is to derive a region-based cost function using temporally consistent local color histograms. While such region-based cost functions are commonly optimized using first-order gradient descent techniques, we systematically derive a Gauss-Newton optimization scheme which gives rise to drastically faster convergence and highly accurate and robust tracking performance. We furthermore propose a novel complex dataset dedicated for the task of monocular object pose tracking and make it publicly available to the community. To our knowledge, it is the first to address the common and important scenario in which both the camera as well as the objects are moving simultaneously in cluttered scenes. In numerous experiments-including our own proposed dataset-we demonstrate that the proposed Gauss-Newton approach outperforms existing approaches, in particular in the presence of cluttered backgrounds, heterogeneous objects and partial occlusions.

A virtual microscope for academic medical education: the pate project.

BACKGROUND: Whole-slide imaging (WSI) has become more prominent and continues to gain in importance in student teaching. Applications with different scope have been developed. Many of these applications have either technical or design shortcomings. OBJECTIVE: To design a survey to determine student expectations of WSI applications for teaching histological and pathological diagnosis. To develop a new WSI application based on the findings of the survey. METHODS: A total of 216 students were questioned about their experiences and expectations of WSI applications, as well as favorable and undesired features. The survey included 14 multiple choice and two essay questions. Based on the survey, we developed a new WSI application called Pate utilizing open source technologies. RESULTS: The survey sample included 216 students-62.0% (134) women and 36.1% (78) men. Out of 216 students, 4 (1.9%) did not disclose their gender. The best-known preexisting WSI applications included Mainzer Histo Maps (199/216, 92.1%), Histoweb Tübingen (16/216, 7.4%), and Histonet Ulm (8/216, 3.7%). Desired features for the students were latitude in the slides (190/216, 88.0%), histological (191/216, 88.4%) and pathological (186/216, 86.1%) annotations, points of interest (181/216, 83.8%), background information (146/216, 67.6%), and auxiliary informational texts (113/216, 52.3%). By contrast, a discussion forum was far less important (9/216, 4.2%) for the students. CONCLUSIONS: The survey revealed that the students appreciate a rich feature set, including WSI functionality, points of interest, auxiliary informational texts, and annotations. The development of Pate was significantly influenced by the findings of the survey. Although Pate currently has some issues with the Zoomify file format, it could be shown that Web technologies are capable of providing a high-performance WSI experience, as well as a rich feature set.

Application of clustering techniques to electron-diffraction data: determination of unit-cell parameters.

A new approach to determining the unit-cell vectors from single-crystal diffraction data based on clustering analysis is proposed. The method uses the density-based clustering algorithm DBSCAN. Unit-cell determination through the clustering procedure is particularly useful for limited tilt sequences and noisy data, and therefore is optimal for single-crystal electron-diffraction automated diffraction tomography (ADT) data. The unit-cell determination of various materials from ADT data as well as single-crystal X-ray data is demonstrated.

Alignment of cone beam computed tomography data using intra-oral fiducial markers.

This article illustrates a new method to align and merge two partially overlapping volumes each of them generated by cone beam computed tomography (CBCT). The aggregate volume covers a larger area of investigation and is determined by localizing one fixed LEGO brick in both of the primal volumes. Based on the LEGO brick an approximate registration of the volumes is determined. Afterwards we improve the transformation by minimizing the difference in overlapping space. In this paper we present a method which automates these two steps and provides an aligned volume.

Packing a multidisperse system of hard disks in a circular environment.

We consider the problem of finding the densest closed packing of hard disks with proposed different radii in a circular environment, such that the radius of the circumcircle is minimal. With our approach, we are able to find denser packings for various problem instances than known from the literature. Both for the dynamics of the simulation and for the optimum values of the radii of the circumcircles, we find various scaling laws.

Ultrametricity property of energy landscapes of multidisperse packing problems.

We consider the problem of finding the densest closed packing of hard disks with proposed different radii in a circular environment, such that the radius of the circumcircle is minimal. The subspace of the quasioptimum configurations of this problem exhibits the property of ultrametricity.