Quantitative detection of corrosion minerals in carbon steel using shortwave infrared hyperspectral imaging.

This study presents a novel method for the detection and quantification of atmospheric corrosion products on carbon steel. Using hyperspectral imaging (HSI) in the short-wave infrared range (SWIR) (900-1700 nm), we are able to identify the most common corrosion minerals such as: α-FeO(OH) (goethite), γ-FeO(OH) (lepidocrocite), and γ-Fe2O3 (maghemite). Six carbon steel samples were artificially corroded in a salt spray chamber, each sample with a different duration (between 1 h and 120 hours). These samples were analysed by scanning X-ray diffraction (XRD) and also using a SWIR HSI system. The XRD data is used as baseline data. A random forest regression algorithm is used for training on the combined XRD and HSI data set. Using the trained model, we can predict the abundance map based on the HSI images alone. Several image correlation metrics are used to assess the similarity between the original XRD images and the HSI images. The overall abundance is also calculated and compared for XRD and HSI images. The analysis results show that we are able to obtain visually similar images, with error rates ranging from 3.27 to 13.37%. This suggests that hyperspectral imaging could be a viable tool for the study of corrosion minerals.

Identification of Corrosion Minerals Using Shortwave Infrared Hyperspectral Imaging.

In this study, we propose a new method to identify corrosion minerals in carbon steel using hyperspectral imaging (HSI) in the shortwave infrared range (900-1700 nm). Seven samples were artificially corroded using a neutral salt spray test and examined using a hyperspectral camera. A normalized cross-correlation algorithm is used to identify four different corrosion minerals (goethite, magnetite, lepidocrocite and hematite), using reference spectra. A Fourier Transform Infrared spectrometer (FTIR) analysis of the scraped corrosion powders was used as a ground truth to validate the results obtained by the hyperspectral camera. This comparison shows that the HSI technique effectively detects the dominant mineral present in the samples. In addition, HSI can also accurately predict the changes in mineral composition that occur over time.

A simple computer vision pipeline reveals the effects of isolation on social interaction dynamics in Drosophila.

Isolation profoundly influences social behavior in all animals. In humans, isolation has serious effects on health. Drosophila melanogaster is a powerful model to study small-scale, temporally-transient social behavior. However, longer-term analysis of large groups of flies is hampered by the lack of effective and reliable tools. We built a new imaging arena and improved the existing tracking algorithm to reliably follow a large number of flies simultaneously. Next, based on the automatic classification of touch and graph-based social network analysis, we designed an algorithm to quantify changes in the social network in response to prior social isolation. We observed that isolation significantly and swiftly enhanced individual and local social network parameters depicting near-neighbor relationships. We explored the genome-wide molecular correlates of these behavioral changes and found that whereas behavior changed throughout the six days of isolation, gene expression alterations occurred largely on day one. These changes occurred mostly in metabolic genes, and we verified the metabolic changes by showing an increase of lipid content in isolated flies. In summary, we describe a highly reliable tracking and analysis pipeline for large groups of flies that we use to unravel the behavioral, molecular and physiological impact of isolation on social network dynamics in Drosophila.

On the use of dorsiventral reflectance asymmetry of hornbeam (Carpinus betulus L.) leaves in air pollution estimation.

This study examines the role of dorsiventral leaf measurements in reflectance-based air quality estimation. The dorsiventral asymmetry is used to describe the difference between the upper (adaxial) and lower (abaxial) leaf side. Spectral characteristics of dorsiventral asymmetry and both adaxial and abaxial leaf reflectance are investigated for a typical dicotyledonous species Carpinus betulus used in an urban environment. The link with traffic-related air pollution is established and the potential for monitoring of air quality is evaluated. We conclude that dorsiventral reflectance asymmetry is a factor that should not be ignored in canopy measurements and modeling. On the other hand, the benefits of dorsiventral asymmetry indices as a tool for reflectance-based air quality seem limited.

Hyperspectral leaf reflectance of Carpinus betulus L. saplings for urban air quality estimation.

In urban areas, the demand for local assessment of air quality is high. The existing monitoring stations cannot fulfill the needs. This study assesses the potential of hyperspectral tree leaf reflectance for monitoring traffic related air pollution. Hereto, 29 Carpinus betulus saplings were exposed to an environment with either high or low traffic intensity. The local air quality was estimated by leaf saturation isothermal remanent magnetization (SIRM). The VIS-NIR leaf reflectance spectrum (350-2500 nm) was measured using a handheld AgriSpec spectroradiometer (ASD Inc.). Secondary, leaf chlorophyll content index (CCI), specific leaf area (SLA) and water content (WC) were determined. To gain insight in the link between leaf reflectance and air quality, the correlation between SIRM and several spectral features was determined. The spectral features that were tested are plain reflectance values, derivative of reflectance, two-band indices using the NDVI formula and PCA components. Spectral reflectance for wavelength bands in the red and short wave IR around the red edge, were correlated to SIRM with Pearson correlations of up to R = -0.85 (R2 = 0.72). Based on the spectral features and combinations thereof, binomial logistic regression models were trained to classify trees into high or low traffic pollution exposure, with classification accuracies up to 90%. It can be concluded that hyperspectral reflectance of C. betulus leaves can be used to detect different levels of air pollution within an urban environment.

Automatic forensic analysis of automotive paints using optical microscopy.

The timely identification of vehicles involved in an accident, such as a hit-and-run situation, bears great importance in forensics. To this end, procedures have been defined for analyzing car paint samples that combine techniques such as visual analysis and Fourier transform infrared spectroscopy. This work proposes a new methodology in order to automate the visual analysis using image retrieval. Specifically, color and texture information is extracted from a microscopic image of a recovered paint sample, and this information is then compared with the same features for a database of paint types, resulting in a shortlist of candidate paints. In order to demonstrate the operation of the methodology, a test database has been set up and two retrieval experiments have been performed. The first experiment quantifies the performance of the procedure for retrieving exact matches, while the second experiment emulates the real-life situation of paint samples that experience changes in color and texture over time.

Bias field reduction by localized Lloyd-Max quantization.

Bias field reduction is a common problem in medical imaging. A bias field usually manifests itself as a smooth intensity variation across the image. The resulting image inhomogeneity is a severe problem for posterior image processing and analysis techniques such as registration or segmentation. In this article, we present a novel debiasing technique based on localized Lloyd-Max quantization (LMQ). The local bias is modeled as a multiplicative field and is assumed to be slowly varying. The method is based on the assumption that the global, undegraded histogram is characterized by a limited number of gray values. The goal is then to find the discrete intensity values such that spreading those values according to the local bias field reproduces the global histogram as good as possible. We show that our method is capable of efficiently reducing (even strong) bias fields in 3D volumes.

Wavelet denoising of multicomponent images using gaussian scale mixture models and a noise-free image as priors.

In this paper, a Bayesian wavelet-based denoising procedure for multicomponent images is proposed. A denoising procedure is constructed that (1) fully accounts for the multicomponent image covariances, (2) makes use of Gaussian scale mixtures as prior models that approximate the marginal distributions of the wavelet coefficients well, and (3) makes use of a noise-free image as extra prior information. It is shown that such prior information is available with specific multicomponent image data of, e.g., remote sensing and biomedical imaging. Experiments are conducted in these two domains, in both simulated and real noisy conditions.

Dissecting cognitive stages with time-resolved fMRI data: a comparison of fuzzy clustering and independent component analysis.

In combination with cognitive tasks entailing sequences of sensory and cognitive processes, event-related acquisition schemes allow using functional MRI to examine not only the topography but also the temporal sequence of cortical activation across brain regions (time-resolved fMRI). In this study, we compared two data-driven methods--fuzzy clustering method (FCM) and independent component analysis (ICA)--in the context of time-resolved fMRI data collected during the performance of a newly devised visual imagery task. We analyzed a multisubject fMRI data set using both methods and compared their results in terms of within- and between-subject consistency and spatial and temporal correspondence of obtained maps and time courses. Both FCM and spatial ICA allowed discriminating the contribution of distinct networks of brain regions to the main cognitive stages of the task (auditory perception, mental imagery and behavioural response), with good agreement across methods. Whereas ICA worked optimally on the original time series, averaging with respect to the task onset (and thus introducing some a priori information on the stimulation protocol) was found to be indispensable in the case of FCM. On averaged time series, FCM led to a richer decomposition of the spatio-temporal patterns of activation and allowed a finer separation of the neurocognitive processes subserving the mental imagery task. This study confirms the efficacy of the two examined methods in the data-driven estimation of hemodynamic responses in time-resolved fMRI studies and provides empirical guidelines to their use.

Spatiotemporal properties of the BOLD response in the songbirds' auditory circuit during a variety of listening tasks.

Auditory fMRI in humans has recently received increasing attention from cognitive neuroscientists as a tool to understand mental processing of learned acoustic sequences and analyzing speech recognition and development of musical skills. The present study introduces this tool in a well-documented animal model for vocal learning, the songbird, and provides fundamental insight in the main technical issues associated with auditory fMRI in these songbirds. Stimulation protocols with various listening tasks lead to appropriate activation of successive relays in the songbirds' auditory pathway. The elicited BOLD response is also region and stimulus specific, and its temporal aspects provide accurate measures of the changes in brain physiology induced by the acoustic stimuli. Extensive repetition of an identical stimulus does not lead to habituation of the response in the primary or secondary telencephalic auditory regions of anesthetized subjects. The BOLD signal intensity changes during a stimulation and subsequent rest period have a very specific time course which shows a remarkable resemblance to auditory evoked BOLD responses commonly observed in human subjects. This observation indicates that auditory fMRI in the songbird may establish a link between auditory related neuro-imaging studies done in humans and the large body of neuro-ethological research on song learning and neuro-plasticity performed in songbirds.

Wavelet thresholding of multivalued images.

In this paper, a denoising technique for multivalued images exploiting interband correlations is proposed. A redundant wavelet transform is applied and denoising is applied by thresholding wavelet coefficients. Specific functions of the wavelet coefficients are defined that exploit interscale and/or interband correlation of the signal. Three functions are studied: the square of the wavelet coefficients, products of coefficients at adjacent scales, and products of coefficients from different bands. For these functions, the signal and noise probability density functions (pdf) become more separated. The high signal correlation between bands is exploited by summing these products over all bands, in this way separating noise and signal pdfs even more. The noise pdf of the proposed quantities is derived analytically and from this, a wavelet threshold is derived. The technique is demonstrated to outperform single band wavelet thresholding on multispectral remote sensing images and on multimodal MRI images.

An orthogonal wavelet representation of multivalued images.

In this paper, a new orthogonal wavelet representation of multivalued images is presented. The idea for this representation is based on the concept of maximal gradient of multivalued images. This concept is generalized from gradients toward linear vector operators in the image plane with equal components along rows and columns. Using this generalization, the pyramidal dyadic wavelet transform algorithm using quadrature mirror filters is modified to be applied to multivalued images. This results in a representation of a single image, containing multiscale detail information from all component images involved. This representation leads to multiple applications ranging from multispectral image fusion to color and multivalued image enhancement, denoising and segmentation. In this paper, the representation is applied for fusion of images. More in particular, we introduce a scheme to merge high spatial resolution greylevel images with low spatial resolution multivalued images to improve spatial resolution of the latter while preserving spectral resolution. Two applications are studied: demosaicing of color images and merging of multispectral remote sensing images.

A multivalued image wavelet representation based on multiscale fundamental forms.

In this paper, a new wavelet representation for multivalued images is presented. The idea for this representation is based on the first fundamental form that provides a local measure for the contrast of a multivalued image. In this paper, this concept is extended toward multiscale fundamental forms using the dyadic wavelet transform of Mallat. The multiscale fundamental forms provide a local measure for the contrast of a multivalued image at different scales. The representation allows for a multiscale edge description of multivalued images. A variety of applications is presented, including multispectral image fusion, color image enhancement and multivalued image noise filtering. In an experimental section, the presented techniques are compared to single valued and/or single scale algorithms that were previously described in the literature. The techniques, based on the new representation are demonstrated to outperform the others.