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1.
Nat Commun ; 15(1): 3339, 2024 Apr 30.
Artículo en Inglés | MEDLINE | ID: mdl-38688961

RESUMEN

Social networks are a mathematical representation of interactions among individuals which are prevalent across various animal species. Studies of human populations have shown the breadth of what can spread throughout a social network: obesity, smoking cessation, happiness, drug use and divorce. 'Betweenness centrality' is a key property of social networks that indicates an individual's importance in facilitating communication and cohesion within the network. Heritability of betweenness centrality has been suggested in several species, however the genetic regulation of this property remains enigmatic. Here, we demonstrate that the gene CG14109, referred to as degrees of kevin bacon (dokb), influences betweenness centrality in Drosophila melanogaster. We identify strain-specific alleles of dokb with distinct amino acid sequences and when the dokb allele is exchanged between strains, flies exhibit the betweenness centrality pattern dictated by the donor allele. By inserting a GAL4 reporter into the dokb locus, we confirm that dokb is expressed in the central nervous system. These findings define a novel genetic entry point to study social network structure and thereby establish gene-to-social structure relationships. While dokb sequence homology is exclusive to Diptera, we anticipate that dokb-associated molecular pathways could unveil convergent neural mechanisms of social behaviour that apply in diverse animal species.


Asunto(s)
Proteínas de Drosophila , Drosophila melanogaster , Animales , Drosophila melanogaster/genética , Proteínas de Drosophila/genética , Proteínas de Drosophila/metabolismo , Alelos , Masculino , Femenino , Conducta Animal , Conducta Social , Red Social
2.
Curr Opin Cell Biol ; 88: 102356, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38608425

RESUMEN

Cryo-electron tomography (cryo-ET) has begun to provide intricate views of cellular architecture at unprecedented resolutions. Considerable efforts are being made to further optimize and automate the cryo-ET workflow, from sample preparation to data acquisition and analysis, to enable visual proteomics inside of cells. Here, we will discuss the latest advances in cryo-ET that go hand in hand with their application to the actin cytoskeleton. The development of deep learning tools for automated annotation of tomographic reconstructions and the serial lift-out sample preparation procedure will soon make it possible to perform high-resolution structural biology in a whole new range of samples, from multicellular organisms to organoids and tissues.


Asunto(s)
Citoesqueleto de Actina , Tomografía con Microscopio Electrónico , Citoesqueleto de Actina/metabolismo , Citoesqueleto de Actina/química , Humanos , Animales , Microscopía por Crioelectrón , Análisis de la Célula Individual
3.
Adv Mater ; 36(6): e2307553, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-37769647

RESUMEN

In many cases, the hybridization of two or more excitation modes in solids has led to new and useful dispersion relations of waves. Well-studied examples are phonon polaritons, plasmon polaritons, particle-plasmon polaritons, cavity polaritons, and magnetic resonances at optical frequencies. In all of these cases, the lowest propagating mode couples to a finite-frequency localized resonance. Herein, the unusual metamaterial phonon dispersion relations arising from the hybridization of an ordinary acoustical phonon mode with a back-folded soft or easy phonon mode of a monomode elastic metamaterial are discussed. Conceptually, the single easy mode can have strictly zero wave velocity. In reality, its wave velocity is very much smaller than that of all other modes. Considering polymeric three-dimensional printed elastic monomode metamaterials at ultrasound frequencies, it is shown theoretically and experimentally that the resulting pronounced avoided crossing, with a frequency splitting comparable to the mid-frequency, leads to backward-wave behavior for the lowest band over a broad frequency range, conceptually at zero loss.

4.
Nat Methods ; 2023 Dec 18.
Artículo en Inglés | MEDLINE | ID: mdl-38110637

RESUMEN

Cryo-focused ion beam milling of frozen-hydrated cells and subsequent cryo-electron tomography (cryo-ET) has enabled the structural elucidation of macromolecular complexes directly inside cells. Application of the technique to multicellular organisms and tissues, however, is still limited by sample preparation. While high-pressure freezing enables the vitrification of thicker samples, it prolongs subsequent preparation due to increased thinning times and the need for extraction procedures. Additionally, thinning removes large portions of the specimen, restricting the imageable volume to the thickness of the final lamella, typically <300 nm. Here we introduce Serial Lift-Out, an enhanced lift-out technique that increases throughput and obtainable contextual information by preparing multiple sections from single transfers. We apply Serial Lift-Out to Caenorhabditis elegans L1 larvae, yielding a cryo-ET dataset sampling the worm's anterior-posterior axis, and resolve its ribosome structure to 7 Å and a subregion of the 11-protofilament microtubule to 13 Å, illustrating how Serial Lift-Out enables the study of multicellular molecular anatomy.

5.
Nat Methods ; 20(4): 523-535, 2023 04.
Artículo en Inglés | MEDLINE | ID: mdl-36973549

RESUMEN

Single-molecule Förster-resonance energy transfer (smFRET) experiments allow the study of biomolecular structure and dynamics in vitro and in vivo. We performed an international blind study involving 19 laboratories to assess the uncertainty of FRET experiments for proteins with respect to the measured FRET efficiency histograms, determination of distances, and the detection and quantification of structural dynamics. Using two protein systems with distinct conformational changes and dynamics, we obtained an uncertainty of the FRET efficiency ≤0.06, corresponding to an interdye distance precision of ≤2 Å and accuracy of ≤5 Å. We further discuss the limits for detecting fluctuations in this distance range and how to identify dye perturbations. Our work demonstrates the ability of smFRET experiments to simultaneously measure distances and avoid the averaging of conformational dynamics for realistic protein systems, highlighting its importance in the expanding toolbox of integrative structural biology.


Asunto(s)
Transferencia Resonante de Energía de Fluorescencia , Proteínas , Transferencia Resonante de Energía de Fluorescencia/métodos , Reproducibilidad de los Resultados , Proteínas/química , Conformación Molecular , Laboratorios
6.
Adv Mater ; 35(18): e2211801, 2023 May.
Artículo en Inglés | MEDLINE | ID: mdl-36787442

RESUMEN

In classical Cauchy elasticity, 3D materials exhibit six eigenmodes of deformation. Following the 1995 work of Milton and Cherkaev, extremal elastic materials can be classified by the number of eigenmodes, N, out of these six that are "easy". Using Greek number words, this leads to hexamode (N = 6), pentamode (N = 5), tetramode (N = 4), trimode (N = 3), dimode (N = 2), and monomode (N = 1) materials. While hexamode materials are unstable in all regards, the possibility of pentamode metamaterials ("meta-fluids") has attracted considerable attention throughout the last decade. Here, inspired by the 2021 theoretical work of Wei, Liu, and Hu, microstructured 3D polymer-based tetramode metamaterials are designed and characterized by numerical band-structure calculations, fabricated by laser printing, characterized by ultrasound experiments, and compared to the theoretical ideal. An application in terms of a compact and broadband polarizer for acoustical phonons at ultrasound frequencies is demonstrated.

7.
Nat Commun ; 13(1): 3842, 2022 07 04.
Artículo en Inglés | MEDLINE | ID: mdl-35789161

RESUMEN

Actin filaments assemble into force-generating systems involved in diverse cellular functions, including cell motility, adhesion, contractility and division. It remains unclear how networks of actin filaments, which individually generate piconewton forces, can produce forces reaching tens of nanonewtons. Here we use in situ cryo-electron tomography to unveil how the nanoscale architecture of macrophage podosomes enables basal membrane protrusion. We show that the sum of the actin polymerization forces at the membrane is not sufficient to explain podosome protrusive forces. Quantitative analysis of podosome organization demonstrates that the core is composed of a dense network of bent actin filaments storing elastic energy. Theoretical modelling of the network as a spring-loaded elastic material reveals that it exerts forces of a few tens of nanonewtons, in a range similar to that evaluated experimentally. Thus, taking into account not only the interface with the membrane but also the bulk of the network, is crucial to understand force generation by actin machineries. Our integrative approach sheds light on the elastic behavior of dense actin networks and opens new avenues to understand force production inside cells.


Asunto(s)
Podosomas , Citoesqueleto de Actina/metabolismo , Actinas/metabolismo , Movimiento Celular , Elasticidad , Podosomas/metabolismo
8.
J Cogn Psychother ; 2022 May 16.
Artículo en Inglés | MEDLINE | ID: mdl-35577515

RESUMEN

The present study aimed to examine the relationship between perfectionism, OCD symptom dimensions, harm avoidance, and incompleteness at varying levels (i.e., higher-order/subscale) in college students. College students (n = 548) completed measures of perfectionism, obsessive-compulsive symptoms, harm avoidance and incompleteness. The results revealed that all five higher-order dimensions of perfectionism were related to incompleteness but only three were related to harm avoidance. Parallel mediation revealed an indirect relationship between concern for mistakes and doubts about actions and checking and cleaning behaviors, respectively, through incompleteness. An indirect relationship between concern for mistakes and doubts about actions with ordering, respectively, through both incompleteness and harm avoidance was found. However, incompleteness played a stronger role than harm avoidance in this relationship. These results suggest that incompleteness might be a stronger motivator than harm avoidance for perfectionistic individuals. Therefore, interventions targeting incompleteness should be implemented to potentially circumvent the development or worsening of obsessive-compulsive symptoms.

9.
Eur J Cell Biol ; 101(3): 151224, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35500467

RESUMEN

Actin contributes to an exceptionally wide range of cellular processes through the assembly and disassembly of highly dynamic and ordered structures. Visualizing these structures in cells can help us understand how the molecular players of the actin machinery work together to produce force-generating systems. In recent years, cryo-electron tomography (cryo-ET) has become the method of choice for structural analysis of the cell interior at the molecular scale. Here we review advances in cryo-ET workflows that have enabled this transformation, especially the automation of sample preparation procedures, data collection, and processing. We discuss new structural analyses of dynamic actin assemblies in cryo-preserved cells, which have provided mechanistic insights into actin assembly and function at the nanoscale. Finally, we highlight the latest visual proteomics studies of actin filaments and their interactors reaching sub-nanometer resolutions in cells.


Asunto(s)
Actinas , Tomografía con Microscopio Electrónico , Microscopía por Crioelectrón/métodos , Tomografía con Microscopio Electrónico/métodos
10.
JBJS Case Connect ; 11(3)2021 07 28.
Artículo en Inglés | MEDLINE | ID: mdl-34319933

RESUMEN

CASE: A 30-year-old man was in a motorcycle accident resulting in an avulsion fracture of the tibial insertion of the posterior cruciate ligament (PCL). After 19 months of nonoperative treatment, the patient presented with a nonunion and symptoms of pain and instability. He was treated with an open repair with screw fixation through a posterior approach. Six months postoperatively, the patient returned to his work as a heavy laborer with full range of motion and no instability. CONCLUSION: PCL avulsion fracture nonunion results in symptoms of swelling, pain, and instability. These symptoms can be treated with screw fixation through a posterior approach.


Asunto(s)
Fracturas por Avulsión , Ligamento Cruzado Posterior , Fracturas de la Tibia , Adulto , Tornillos Óseos , Fijación Interna de Fracturas/métodos , Fracturas por Avulsión/diagnóstico por imagen , Fracturas por Avulsión/cirugía , Humanos , Masculino , Ligamento Cruzado Posterior/diagnóstico por imagen , Ligamento Cruzado Posterior/cirugía , Fracturas de la Tibia/diagnóstico por imagen , Fracturas de la Tibia/cirugía
11.
Nat Commun ; 12(1): 4086, 2021 07 02.
Artículo en Inglés | MEDLINE | ID: mdl-34215727

RESUMEN

Sarcomeres, the basic contractile units of striated muscle, produce the forces driving muscular contraction through cross-bridge interactions between actin-containing thin filaments and myosin II-based thick filaments. Until now, direct visualization of the molecular architecture underlying sarcomere contractility has remained elusive. Here, we use in situ cryo-electron tomography to unveil sarcomere contraction in frozen-hydrated neonatal rat cardiomyocytes. We show that the hexagonal lattice of the thick filaments is already established at the neonatal stage, with an excess of thin filaments outside the trigonal positions. Structural assessment of actin polarity by subtomogram averaging reveals that thin filaments in the fully activated state form overlapping arrays of opposite polarity in the center of the sarcomere. Our approach provides direct evidence for thin filament sliding during muscle contraction and may serve as a basis for structural understanding of thin filament activation and actomyosin interactions inside unperturbed cellular environments.


Asunto(s)
Actinas/metabolismo , Contracción Muscular/fisiología , Miocitos Cardíacos/fisiología , Sarcómeros/fisiología , Citoesqueleto de Actina , Animales , Masculino , Ratones Endogámicos C57BL , Músculo Esquelético/química , Músculo Estriado , Miocitos Cardíacos/ultraestructura , Miofibrillas , Ratas , Ratas Wistar , Sarcómeros/ultraestructura
12.
Phys Chem Chem Phys ; 23(19): 11488-11500, 2021 May 19.
Artículo en Inglés | MEDLINE | ID: mdl-33959733

RESUMEN

To render the sodium ion battery (SIB) competitive among other technologies, the processes behind sodium storage in hard carbon anodes must be understood. For this purpose, electrochemical impedance spectroscopy (EIS) is usually undervalued, since fitting the spectra with equivalent circuit models requires an a priori knowledge about the system at hand. The analysis of the distribution of relaxation times (DRT) is an alternative, which refrains from fitting arbitrarily nested equivalent circuits. In this paper, the sodiation and desodiation of a hard carbon anode is studied by EIS at different states of charge (SOC). By reconstructing the DRT function, highly resolved information on the number and relative contribution of individual electrochemical processes is derived. During the sloping part of the sodiation curve, mass transport is found to be the most dominant source of resistance but rapidly diminishes when the plateau phase is reached. An equivalent circuit model qualitatively reproducing the experimental data of the sloping region was built upon the DRT results, which is particularly useful for future EIS studies on hard carbon SIB anodes. More importantly, this work contributes to establish EIS as a practical tool to directly study electrode processes without the bias of a previously assumed model.

13.
Sci Rep ; 10(1): 11153, 2020 Jul 07.
Artículo en Inglés | MEDLINE | ID: mdl-32636468

RESUMEN

Vanadium redox flow batteries (VRFBs) are considered as promising electrochemical energy storage systems due to their efficiency, flexibility and scalability to meet our needs in renewable energy applications. Unfortunately, the low electrochemical performance of the available carbon-based electrodes hinders their commercial viability. Herein, novel free-standing electrospun nanofibrous carbon-loaded composites with textile-like characteristics have been constructed and employed as efficient electrodes for VRFBs. In this work, polyacrylonitrile-based electrospun nanofibers loaded with different types of carbon black (CB) were electrospun providing a robust free-standing network. Incorporation of CBs (14% and 50% weight ratio) resulted in fibers with rough surface and increased mean diameter. It provided higher BET surface area of 83.8 m2 g-1 for as-spun and 356.7 m2 g-1 for carbonized fibers compared to the commercial carbon felt (0.6 m2 g-1). These loaded CB-fibers also had better thermal stability and showed higher electrochemical activity for VRFBs than a commercial felt electrode.

14.
Commun Biol ; 3(1): 304, 2020 06 12.
Artículo en Inglés | MEDLINE | ID: mdl-32533063

RESUMEN

Many organisms, when alone, behave differently from when they are among a crowd. Drosophila similarly display social behaviour and collective behaviour dynamics within groups not seen in individuals. In flies, these emergent behaviours may be in response to the global size of the group or local nearest-neighbour density. Here we investigate i) which aspect of social life flies respond to: group size, density, or both and ii) whether behavioural changes within the group are dependent on olfactory support cells. Behavioural assays demonstrate that flies adjust their interactive behaviour to group size but otherwise compensate for density by achieving a standard rate of movement, suggesting that individuals are aware of the number of others within their group. We show that olfactory support cells are necessary for flies to behave normally in large groups. These findings shed insight into the subtle and complex life of Drosophila within a social setting.


Asunto(s)
Conducta Animal , Drosophila melanogaster/fisiología , Procesos de Grupo , Conducta Social , Medio Social , Animales , Masculino , Densidad de Población
15.
Proc Natl Acad Sci U S A ; 117(21): 11573-11583, 2020 05 26.
Artículo en Inglés | MEDLINE | ID: mdl-32404421

RESUMEN

Animals interact with each other in species-specific reproducible patterns. These patterns of organization are captured by social network analysis, and social interaction networks (SINs) have been described for a wide variety of species including fish, insects, birds, and mammals. The aim of this study is to understand the evolution of social organization in Drosophila Using a comparative ecological, phylogenetic, and behavioral approach, the different properties of SINs formed by 20 drosophilids were compared. We investigate whether drosophilid network structures arise from common ancestry, a response to the species' past climate, other social behaviors, or a combination of these factors. This study shows that differences in past climate predicted the species' current SIN properties. The drosophilid phylogeny offered no value to predicting species' differences in SINs through phylogenetic signal tests. This suggests that group-level social behaviors in drosophilid species are shaped by divergent climates. However, we find that the social distance at which flies interact correlated with the drosophilid phylogeny, indicating that behavioral elements of SINs have remained largely unchanged in their evolutionary history. We find a significant correlation of leg length to social distance, outlining the interdependence of anatomy and complex social structures. Although SINs display a complex evolutionary relationship across drosophilids, this study suggests that the ecology, and not common ancestry, contributes to diversity in social structure in Drosophila.


Asunto(s)
Evolución Biológica , Drosophila , Ambiente , Conducta Social , Animales , Drosophila/clasificación , Drosophila/genética , Drosophila/fisiología , Femenino , Masculino , Filogenia
16.
Chemphyschem ; 21(5): 428-441, 2020 03 04.
Artículo en Inglés | MEDLINE | ID: mdl-31841241

RESUMEN

An algorithm for the simulation and evaluation of cyclic voltammetry (CV) at macroporous electrodes such as felts, foams, and layered structures is presented. By considering 1D, 2D, and 3D arrays of electrode sheets, cylindrical microelectrodes, hollow-cylindrical microelectrodes, and hollow-spherical microelectrodes the internal diffusion domains of the macroporous structures are approximated. A universal algorithm providing the time-dependent surface concentrations of the electrochemically active species, required for simulating cyclic voltammetry responses of the individual planar, cylindrical, and spherical microelectrodes, is presented as well. An essential ingredient of the algorithm, which is based on Laplace integral transformation techniques, is the use of a modified Talbot contour for the inverse Laplace transformation. It is demonstrated that first-order homogeneous chemical kinetics preceding and/or following the electrochemical reaction and electrochemically active species with non-equal diffusion coefficients can be included in all diffusion models as well. The proposed theory is supported by experimental data acquired for a reference reaction, the oxidation of [Fe(CN)6 ]4- at platinum electrodes as well as for a technically relevant reaction, the oxidation of VO2+ at carbon felt electrodes. Based on our calculation strategy, we provide a powerful open source tool for simulating and evaluating CV data implemented into a Python graphical user interface (GUI).

17.
Beilstein J Nanotechnol ; 10: 1131-1139, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31293851

RESUMEN

Highly porous carbon-carbon composite electrodes for the implementation in redox flow battery systems have been synthesized by a novel soft-templating approach. A PAN-based carbon felt was embedded into a solution containing a phenolic resin, a nitrogen source (pyrrole-2-carboxaldehyde) and a sulfur source (2-thiophenecarboxaldehyde), as well as a triblock copolymer (Pluronic® F-127) acting as the structure-directing agent. By this strategy, highly porous carbon phase co-doped with nitrogen and sulfur was obtained inside the macroporous carbon felt. For the investigation of electrode structure and porosity X-ray photoelectron spectroscopy (XPS), scanning electron microscopy (SEM), and nitrogen sorption (BET) were used. The electrochemical performance of the carbon felts was evaluated by cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). The N- and S-doped carbon electrodes show promising activity for the positive side reaction and could be seen as a significant advance in the design of carbon felt electrodes for use in redox flow batteries.

18.
Phys Chem Chem Phys ; 21(18): 9061-9068, 2019 May 08.
Artículo en Inglés | MEDLINE | ID: mdl-30843917

RESUMEN

In order to quantitatively investigate the kinetic performance and the pore size distribution of carbon felt electrodes for the application in vanadium redox flow batteries, the theory of cyclic voltammetry (CV) is derived for a random network of cylindrical microelectrodes on the base of convolutive modeling. In this context we present an algorithm based on the use of a modified Talbot contour for inverse Laplace transformation, providing the mass transfer functions required for the calculation of the CV responses in external cylindrical finite diffusion space. First-order homogenous chemical kinetics preceding and/or following the electrochemical reactions are implemented in this algorithm as well. The VO2+ oxidation is investigated as model reaction at pristine and electrochemically aged commercial carbon felt electrodes. A fit of simulated data to experimental data clearly shows that an electrochemical aging predominantly affects the kinetics of the electron transfer reaction and that internal electrode surfaces and pore size distributions remain constant. The estimated pore size distributions are in excellent agreement with porosimetry measurements, validating our theory and providing a new strategy to determine electrode porosities and electrode kinetics simultaneously via CV.

19.
Aerosp Med Hum Perform ; 89(12): 1036-1044, 2018 12 01.
Artículo en Inglés | MEDLINE | ID: mdl-30487023

RESUMEN

INTRODUCTION: Sleep restriction may lead to decreased performance and increased accidents and errors. SPHERES, a small satellite testbed, was used to examine the effects of sleep restriction and situation awareness (SA) aids on a simulation of satellite operations.METHODS: Subjects (N = 8) were trained on SPHERES, then, in a randomized order cross-over design, had 3 d of sufficient sleep (SS) or 3 d of sleep restriction (SR) before a testing session. Subjects controlled two SPHERES satellites in a space debris avoidance scenario. Dependent measures included survival time, area covered by the satellites, and satellite motion perception.RESULTS: There were significant interaction effects of sleep protocol Order (SS or SR first) and sleep Condition (SS or SR) on survival time and area covered. Post hoc tests showed longer survival time for the second testing session if the Order was SS first (Mean = 56.1 s, Median = 44.0 s) as compared to SR first (Mean = 42.7 s, Median = 33.5 s). SS-first subjects received benefit from added SA cues of the augmented display in perceiving the satellite motion.DISCUSSION: These data support that learning in a well-rested state may support development of appropriate strategies for better performance. Subjects that were SS during the first session were better able to use added SA cues provided by the augmentation and may have then developed a better mental model of the task and the system. This pilot study suggests that training guidelines for operating multiple robotic assets should permit appropriate rest before and after training to assist in mental model development and task performance.Schneider J, Saenz-Otero A, Klerman E, Stirling L. Strategy development pilot study of sleep-restricted operators using small satellites with displays. Aerosp Med Hum Perform. 2018; 89(12):1036-1044.


Asunto(s)
Concienciación , Privación de Sueño , Nave Espacial , Análisis y Desempeño de Tareas , Adulto , Estudios Cruzados , Femenino , Humanos , Masculino , Proyectos Piloto , Adulto Joven
20.
PLoS One ; 13(10): e0205043, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-30356241

RESUMEN

Drosophila melanogaster are known to live in a social but cryptic world of touch and odours, but the extent to which they can perceive and integrate static visual information is a hotly debated topic. Some researchers fixate on the limited resolution of D. melanogaster's optics, others on their seemingly identical appearance; yet there is evidence of individual recognition and surprising visual learning in flies. Here, we apply machine learning and show that individual D. melanogaster are visually distinct. We also use the striking similarity of Drosophila's visual system to current convolutional neural networks to theoretically investigate D. melanogaster's capacity for visual understanding. We find that, despite their limited optical resolution, D. melanogaster's neuronal architecture has the capability to extract and encode a rich feature set that allows flies to re-identify individual conspecifics with surprising accuracy. These experiments provide a proof of principle that Drosophila inhabit a much more complex visual world than previously appreciated.


Asunto(s)
Drosophila melanogaster/fisiología , Animales , Femenino , Aprendizaje Automático , Masculino , Modelos Biológicos , Neuronas/fisiología , Agudeza Visual
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