Climate Change and the Sea: A Major Disruption in Steady State and the Master Variables.

Since the beginning of the industrial revolution, humans have burned enormous quantities of coal, oil, and natural gas, rivaling nature's elemental cycles of C, N, and S. The result has been a disruption in a steady state of CO2 and other greenhouse gases in the atmosphere, a warming of the planet, and changes in master variables (temperature, pH, and pε) of the sea affecting critical physical, chemical, and biological reactions. Humans have also produced copious quantities of N and P fertilizers producing widespread coastal hypoxia and low dissolved oxygen conditions, which now threaten even the open ocean. Consequently, our massive alteration of state variables diminishes coral reefs, fisheries, and marine ecosystems, which are the foundation of life on Earth. We point to a myriad of actions and alternatives which will help to stem the tide of climate change and its effects on the sea while, at the same time, creating a more sustainable future for humans and ecosystems alike.

Lab-scale biodegradation assay using passive samplers to determine microorganisms' ability to reduce polychlorinated biphenyl (PCB) volatilization from contaminated sediment.

Many PCB-degrading aerobes have been identified which may serve as bioaugmentation strains for aerobic, in situ bioremediation or in combination with dredging operations. The present work describes a lab-scale PCB biodegradation assay which can be used to screen potential bioaugmentation strains or consortia for their ability to decrease PCB mass flux from contaminated sediment to air through biodegradation of freely dissolved PCBs that have desorbed from sediment particles. The assay uses two types of passive samplers to simultaneously measure PCB mass that is freely dissolved in aqueous solution and PCB mass that has volatilized to the headspace of the bioreactor. Using this approach, relative comparisons of PCB mass accumulated in passive samplers between bioaugmented treatments and controls allow for practical assessment of a microbial strain's ability to reduce both freely dissolved and vapor phase PCB concentrations. The method is designed to be conducted using aliquots of homogenized, well-characterized, PCB-contaminated sediment gathered from a field site. This work details the experimental design methodology, required materials, bioreactor set-up, passive sampling, PCB-extraction, sample cleanup, and quantification protocols such that the biodegradation assay can be conducted or replicated. A step-by-step protocol is also included and annotated with photos, tips, and tricks from experienced analysts.•Relative comparisons of PCB mass accumulated in passive samplers between experimental treatments and controls allow for practical assessment of bioaugmentation strain's ability to reduce both freely dissolved and vapor phase PCB concentrations•Passive sampler preparation, deployment, PCB-extraction, cleanup procedures, and quantification are detailed step-by-step and annotated by experienced analysts.

Nickel Hyperaccumulator Biochar Sorbs Ni(II) from Water and Wastewater to Create an Enhanced Bio-ore.

Nickel (Ni) hyperaccumulators make up the largest proportion of hyperaccumulator plant species; however, very few biochar studies with hyperaccumulator feedstock have examined them. This research addresses two major hypotheses: (1) Biochar synthesized from the Ni hyperaccumulator Odontarrhena chalcidica grown on natural, metal-rich soil is an effective Ni sorbent due to the plant's ability to bioaccumulate soluble and exchangeable cations; and (2) such biochar can sorb high concentrations of Ni from complex solutions. We found that O. chalcidica grew on sandy, nutrient-poor soil from a Minnesota mining district but did not hyperaccumulate Ni. Biochar prepared from O. chalcidica biomass at a pyrolysis temperature of 900 °C sorbed up to 154 mg g-1 of Ni from solution, which is competitive with the highest-performing Ni sorbents in recent literature and the highest of any unmodified, plant-based biochar material reported in the literature. Precipitation, cation exchange, and adsorption mechanisms contributed to removal. Ni was effectively removed from acidic solutions with initial pH > 2 within 30 min. O. chalcidica biochar also removed Ni(II) from a simulated Ni electroplating rinsewater solution. Together, these results provide evidence for O. chalcidica biochar as an attractive material for simultaneously treating high-Ni wastewater and forming an enhanced Ni bio-ore.

Accumulation, translocation, and transformation of two CdSe/ZnS quantum dots in rice and pumpkin plants.

As a widely applied semiconductor nanomaterial, quantum dots (QDs) have drawn considerable interest. In this study, pumpkin and rice seedlings were hydroponically exposed to two core/shell CdSe/ZnS QDs coated with cysteamine (CdSe/ZnS-CA) and polyethylene glycol-carboxy (CdSe/ZnS-PEG-COOH) for 10 days to analyze their time-varying uptake, translocation, and transformation behaviors in plants. Both QDs were mainly adsorbed/absorbed by the roots in the particulate state, and more CdSe/ZnS-CA accumulated than CdSe/ZnS-PEG-COOH. For CdSe/ZnS-CA-treated plants, the Se and Cd concentrations (CSe and CCd) associated with the roots were 561 ± 75 and 580 ± 73 µg/g (dw) for rice and 474 ± 49 and 546 ± 53 µg/g (dw) for pumpkin, respectively, on day 10. For CdSe/ZnS-PEG-COOH-treated plants, the concentrations of Se and Cd associated with roots were 392 ± 56 and 453 ± 56 µg/g (dw) for rice and 363 ± 52 and 417 ± 52 µg/g (dw) for pumpkin, respectively. The surface charges and coatings significantly affected the accumulation of QDs at the beginning of exposure; however, the impaction decreased with time. The ratios between the Cd and Se concentrations (CCd/CSe) in the stems and leaves varied from those of the QD standards, indicating the transformation of the QDs in the exposure system. Se and Cd were more likely to translocate in CdSe/ZnS-PEG-COOH-treated plants than in CdSe/ZnS-CA-treated plants. The vertical translocation of Se was greater than that of Cd. Rice showed greater abilities of accumulation and translocation of Se and Cd from both QDs than pumpkin. These findings improve our understanding of the interference of QDs with plants and their environmental fate.

How can we possibly resolve the planet's nitrogen dilemma?

Nitrogen is the most crucial element in the production of nutritious feeds and foods. The production of reactive nitrogen by means of fossil fuel has thus far been able to guarantee the protein supply for the world population. Yet, the production and massive use of fertilizer nitrogen constitute a major threat in terms of environmental health and sustainability. It is crucial to promote consumer acceptance and awareness towards proteins produced by highly effective microorganisms, and their potential to replace proteins obtained with poor nitrogen efficiencies from plants and animals. The fact that reactive fertilizer nitrogen, produced by the Haber Bosch process, consumes a significant amount of fossil fuel worldwide is of concern. Moreover, recently, the prices of fossil fuels have increased the cost of reactive nitrogen by a factor of 3 to 5 times, while international policies are fostering the transition towards a more sustainable agro-ecology by reducing mineral fertilizers inputs and increasing organic farming. The combination of these pressures and challenges opens opportunities to use the reactive nitrogen nutrient more carefully. Time has come to effectively recover used nitrogen from secondary resources and to upgrade it to a legal status of fertilizer. Organic nitrogen is a slow-release fertilizer, it has a factor of 2.5 or higher economic value per unit nitrogen as fertilizer and thus adequate technologies to produce it, for instance by implementing photobiological processes, are promising. Finally, it appears wise to start the integration in our overall feed and food supply chains of the exceptional potential of biological nitrogen fixation. Nitrogen produced by the nitrogenase enzyme, either in the soil or in novel biotechnology reactor systems, deserves to have a 'renaissance' in the context of planetary governance in general and the increasing number of people who desire to be fed in a sustainable way in particular.

Phytoremediation, Bioaugmentation, and the Plant Microbiome.

Understanding plant biology and related microbial ecology as a means to phytoremediate soil and groundwater contamination has broadened and advanced the field of environmental engineering and science over the past 30 years. Using plants to transform and degrade xenobiotic organic pollutants delivers new methods for environmental restoration. Manipulations of the plant microbiome through bioaugmentation, endophytes, adding various growth factors, genetic modification, and/or selecting the microbial community via insertion of probiotics or phages for gene transfer are future areas of research to further expand this green, cost-effective, aesthetically pleasing technology─phytoremediation.

Aerobic Bioaugmentation to Decrease Polychlorinated Biphenyl (PCB) Emissions from Contaminated Sediments to Air.

We conducted experiments to determine whether bioaugmentation with aerobic, polychlorinated biphenyl (PCB)-degrading microorganisms can mitigate polychlorinated biphenyl (PCB) emissions from contaminated sediment to air. Paraburkholderia xenovorans strain LB400 was added to bioreactors containing PCB-contaminated site sediment. PCB mass in both the headspace and aqueous bioreactor compartments was measured using passive samplers over 35 days. Time-series measurements of all 209 PCB congeners revealed a 57% decrease in total PCB mass accumulated in the vapor phase of bioaugmented treatments relative to non-bioaugmented controls, on average. A comparative congener-specific analysis revealed preferential biodegradation of lower-chlorinated PCBs (LC-PCBs) by LB400. Release of the most abundant congener (PCB 4 [2,2'-dichlorobiphenyl]) decreased by over 90%. Simulations with a PCB reactive transport model closely aligned with experimental observations. We also evaluated the effect of the phytogenic biosurfactant, saponin, on PCB bioavailability and biodegradation by LB400. Time-series qPCR measurements of biphenyl dioxygenase (bphA) genes showed that saponin better maintained bphA abundance, compared to the saponin-free treatment. These findings indicate that an active population of bioaugmented, aerobic PCB-degrading microorganisms can effectively lower PCB emissions and may therefore contribute to minimizing PCB inhalation exposure in communities surrounding PCB-contaminated sites.

Modeling Risk Dynamics of Contaminants of Emerging Concern in a Temperate-region Wastewater Effluent-dominated Stream.

Wastewater effluent-dominated streams are becoming increasingly common worldwide, including in temperate regions, with potential impacts on ecological systems and drinking water sources. We recently quantified the occurrence/ spatiotemporal dynamics of pharmaceutical mixtures in a representative temperate-region wastewater effluent-dominated stream (Muddy Creek, Iowa) under baseflow conditions and characterized relevant fate processes. Herein, we quantified the ecological risk quotients (RQs) of 19 effluent-derived contaminants of emerging concern (CECs; including: 14 pharmaceuticals, 2 industrial chemicals, and 3 neonicotinoid insecticides) and 1 run-off-derived compound (atrazine) in the stream under baseflow conditions, and estimated the probabilistic risks of effluent-derived CECs under all-flow conditions (i.e., including runoff events) using stochastic risk modeling. We determined that 11 out of 20 CECs pose medium-to-high risks to local ecological systems (i.e., algae, invertebrates, fish) based on literature-derived acute effects under measured baseflow conditions. Stochastic risk modeling indicated decreased, but still problematic, risk of effluent-derived CECs (i.e., RQ≥0.1) under all-flow conditions when runoff events were included. Dilution of effluent-derived chemicals from storm flows thus only minimally decreased risk to aquatic biota in the effluent-dominated stream. We also modeled in-stream transport. Thirteen out of 14 pharmaceuticals persisted along the stream reach (median attenuation rate constant k<0.1 h-1) and entered the Iowa River at elevated concentrations. Predicted and measured concentrations in the drinking water treatment plant were below the human health benchmarks. This study demonstrates the application of probabilistic risk assessments for effluent-derived CECs in a representative effluent-dominated stream under variable flow conditions (when measurements are less practical) and provides an enhanced prediction tool transferable to other effluent-dominated systems.

Decadal Journey of E-Waste Recycling: What Has It Achieved?

E-waste recycling has been a hot topic around the world. This Feature revisits the issues raised by our previous Feature 10 years ago, i.e., the environmental, economic, and social benefits of e-waste recycling, using China as an example. The decadal journey of e-waste recycling has witnessed a giant leap from haphazard disposal initially to regulated disassembly presently. Specific successful stories include cleaned environment and reduced human exposure, significant advantages of urban mining over mineral mining, additional employment opportunities, and improved legislation system related to e-waste recycling. Strict legislation systems related to e-waste management based on the principle of Extended Producer Responsibility are key to the sustainable development of the e-waste recycling sector in China. The experiences and lessons learned in China would provide valuable guidelines for other developing countries.

Combined read- and assembly-based metagenomics to reconstruct a Dehalococcoides mccartyi genome from PCB-contaminated sediments and evaluate functional differences among organohalide-respiring consortia in the presence of different halogenated contaminants.

Microbial communities that support respiration of halogenated organic contaminants by Dehalococcoides sp. facilitate full-scale bioremediation of chlorinated ethenes and demonstrate the potential to aid in bioremediation of halogenated aromatics like polychlorinated biphenyls (PCBs). However, it remains unclear if Dehalococcoides-containing microbial community dynamics observed in sediment-free systems quantitatively resemble that of sediment environments. To evaluate that possibility we assembled, annotated, and analyzed a Dehalococcoides sp. metagenome-assembled genome (MAG) from PCB-contaminated sediments. Phylogenetic analysis of reductive dehalogenase gene (rdhA) sequences within the MAG revealed that pcbA1 and pcbA4/5-like rdhA were absent, while several candidate PCB dehalogenase genes and potentially novel rdhA sequences were identified. Using a compositional comparative metagenomics approach, we quantified Dehalococcoides-containing microbial community structure shifts in response to halogenated organics and the presence of sediments. Functional level analysis revealed significantly greater abundances of genes associated with cobamide remodeling and horizontal gene transfer in tetrachloroethene-fed cultures as compared to halogenated aromatic-exposed consortia with or without sediments, despite little evidence of statistically significant differences in microbial community taxonomic structure. Our findings support the use of a generalizable comparative metagenomics workflow to evaluate Dehalococcoides-containing consortia in sediments and sediment-free environments to eludicate functions and microbial interactions that facilitate bioremediation of halogenated organic contaminants.

Metagenomes, Metagenome-Assembled Genomes, and Metatranscriptomes from Polychlorinated Biphenyl-Contaminated Sediment Microcosms.

We present a comprehensive data set that describes an anaerobic microbial consortium native to polychlorinated biphenyl (PCB)-contaminated sediments. Obtained from sediment microcosms incubated for 200 days, the data set includes 4 metagenomes, 4 metatranscriptomes (in duplicate), and 62 metagenome-assembled genomes and captures microbial community interactions, structure, and function relevant to anaerobic PCB biodegradation.

Nickel Hyperaccumulator Biochar as a Ni-Adsorbent and Enhanced Bio-ore.

Increasing nickel (Ni) demand may spur the need for creative Ni production methods. Agromining (farming for metals) uses plants that can accumulate high concentrations of metal in their biomass, called bio-ore, as a metal extraction strategy. Furthermore, biochar, produced by biomass pyrolysis under low-oxygen conditions, can be used to remove Ni from contaminated wastewaters. In this work we investigate whether biochar synthesized from the Ni-hyperaccumulating plant Odontarrhena chalcidica (synonymous Alyssum murale) can be used as a Ni-adsorbing biochar. We grew O. chalcidica on soils with varying Ni concentration, characterized the plants and resultant biochars synthesized at different pyrolysis temperatures, and analyzed Ni batch adsorption results to determine the adsorption capacity of O. chalcidica biochar. We found that Ni concentration in O. chalcidica increases with increasing soil Ni but reaches an accumulation limit around 23 g Ni kg-1 dry weight in dried leaf samples. Pyrolysis concentrated Ni in the biochar; higher pyrolysis temperatures led to higher biochar Ni concentrations (max. 87 g Ni kg-1) and surface areas (max. 103 m2/g). Finally, the O. chalcidica biochar adsorption results were comparable to high-performing Ni adsorbents in the literature. The adsorption process greatly increased the Ni concentration in some biochars, indicating that synthesizing biochar from O. chalcidica biomass and using it as a Ni adsorbent can produce a Ni-enhanced bio-ore with nickel content higher than all nickel-rich veins currently mined.

Microbial communities in polychlorinated biphenyl (PCB)-contaminated wastewater lagoon sediments: PCB congener, quantitative PCR, and 16S rRNA gene amplicon sequencing datasets.

The potential for aerobic and anaerobic microbial natural attenuation of PCBs in freshwater sediments is described by PCB congener, quantitative PCR, and 16S rRNA gene amplicon sequencing datasets generated, in duplicate, from 27 sediment samples collected from a PCB-contaminated freshwater lagoon (54 samples total). Sediment samples were subjected to a hexane PCB extraction protocol and the concentrations of 209 PCB congeners were determined in hexane extracts by gas chromatography with a tandem mass spectrometry detection. DNA was extracted from sediments sediment samples and used for qPCR and 16S rRNA amplicon sequencing. The abundance of 16S rRNA genes (i.e., Dehalococcoides and putative dechlorinating Chloroflexi) and functional genes (i.e., reductive dehalogenase (rdhA) and biphenyl dioxygenase (bphA)) associated with aerobic and anaerobic PCB biodegradation, along with the total 16S rRNA genes abundance, was determined by SYBR green qPCR. The microbial community composition and structure in all sediment samples was obtained by 16S rRNA gene amplicon sequencing. Primers targeting the 16S rRNA gene V4 region were used to produce 16S rRNA gene amplicons that were sequencing with the high-throughput Illumina MiSeq platform and sequencing chemistry. The 16S rRNA gene sequencing dataset along with PCB congener and qPCR datasets included as metadata, could be reused in meta-analyses that aim to determine microbial community interactions in contaminated environments, and uncover relationships between microbial community structure and environmental variable (e.g., PCB congener concentrations).

Two Typical Glycosylated Metabolites of Tetrabromobisphenol A Formed in Plants: Excretion and Deglycosylation in Plant Root Zones.

The glycosylation process was investigated for the common brominated flame retardant tetrabromobisphenol A (TBBPA) in hydroponic exposure systems with pumpkin seedlings. Two typical glycosylation metabolites of TBBPA formed in pumpkin seedlings, TBBPA mono-ß-d-glucopyranoside (TBBPA MG) and TBBPA di-ß-d-glucopyranoside (TBBPA DG), increasing their mass early in the exposure (reaching maximum masses of 608 ± 53 and 3806 ± 1570 pmol at 12 h, respectively) and then falling throughout exposure. These two metabolites were released from roots to rhizosphere solutions, where they also exhibited initial increases followed by decreasing trends (reaching maximum masses of 595 ± 272 pmol at 3 h and 77.1 ± 36.0 pmol at 6 h, respectively). However, a (pseudo)zero-order deglycosylation of TBBPA MG and TBBPA DG (during the first 1.5 h) back to TBBPA was unexpectedly detected in the hydroponic solutions containing pumpkin exudates and microorganisms. The function of microorganisms in the solutions was further investigated, revealing that the microorganisms were main contributors to deglycosylation. Plant detoxification through glycosylation and excretion, followed by deglycosylation of metabolites back to the toxic parent compound (TBBPA) in hydroponic solutions, provides new insight into the uptake, transformation, and environmental fate of TBBPA and its glycosylated metabolites in plant/microbial systems.

Sustainably Cultivating and Harvesting Microalgae through Sedimentation and Forward Osmosis Using Wastes.

Cost-effective nutrient sources and dewatering are major obstacles to sustainable, scaled-up cultivation of microalgae. Employing waste resources as sources of nutrients offsets costs for nutrient supplies while adding value through simultaneous waste treatment. Forward osmosis (FO), using simulated reverse osmosis brine, is a low-energy membrane technology that can be employed to efficiently harvest microalgae from a dilute solution. In this study, Scenedesmus obliquus, a green microalga, was cultivated with a fertilizer plant wastewater formula and simulated coal-fired power plant flue gas and then separated through either FO, with reverse osmosis reject model water as the draw solution, or sedimentation. Microalgal batches grown with simulated wastewater removed NH4 + within 2 days and reached nitrogen and phosphorus limitation simultaneously on Day 5. Sparging with the flue gas caused S. obliquus to produce significantly greater quantities of extracellular polymeric substances (30.7 ± 1.8 µg mL-1), which caused flocculation and enhanced settling to an advantageous extent. Five-hour FO trials showed no statistically significant difference (p = 0.65) between water fluxes for cultures grown with simulated flue gas and CO2-supplemented air (3.0 ± 0.1 and 3.0 ± 0.3 LMH, respectively). Reverse salt fluxes were low for all conditions and, remarkably, the rate of reverse salt flux was -1.9 ± 0.6 gMH when the FO feed was culture grown with simulated flue gas. In this work, S. obliquus was cultivated and harvested with potential waste resources.

Interconversion between methoxylated, hydroxylated and sulfated metabolites of PCB 3 in whole poplar plants.

Methoxylated polychlorinated biphenyls (MeO-PCBs) are overlooked metabolites of PCBs. In general, they are more toxic to plants than their parent congeners. However, information on the fate of MeO-PCBs and the relationship between methoxylated, hydroxylated and sulfated metabolites of PCBs in plants is scarce. In this work, poplar plants (Populus deltoides × nigra, DN34) were hydroponically and separately exposed to 4'-methoxy-4-monochlorobiphenyl (4'-MeO-PCB 3) and 4'-PCB 3 sulfate for 10 days to investigate the uptake, translocation and metabolism of MeO-PCBs and the relationship between methoxy-PCBs, hydroxyl-PCBs and PCB sulfates within plants. Results showed that 4'-MeO-PCB 3 and 4'-PCB 3 sulfate were taken up by the roots of poplar plants and translocated from roots to shoots and leaves. 4'-OH-PCB 3 and 4'-PCB 3 sulfate were identified as the hydroxylated metabolite and sulfate metabolite of 4'-MeO-PCB 3 in poplar, respectively. In the backward reaction, 4'-OH-PCB 3 and 4'-MeO-PCB 3 were found as metabolites of 4'-PCB 3 sulfate. For exposure groups, the yields of 4'-OH-PCB 3 produced from 4'-MeO-PCB 3 and 4'-PCB 3 sulfate were 1.29% and 0.13% respectively. The yield of 4'-PCB 3 sulfate which originated from 4'-MeO-PCB 3 in wood and root samples of exposure groups was only 0.02%. Only 0.04% of the initial mass of 4'-PCB 3 sulfate was transformed to 4'-MeO-PCB 3 in the exposure groups. The sulfation yield of 4'-OH-PCB 3 was higher than hydrolysis yield of 4'-PCB 3 sulfate, indicating that formation of PCB sulfates was predominant over the reverse reaction, the formation of hydroxy-PCBs. These results provide new perspective on the transport, metabolism, and fate of MeO-PCBs, and also help to better understand sources of OH-PCBs and PCB sulfates in the environment. This study provides the first evidence of interconversion of sulfate metabolites from methoxy-PCBs and methoxy-PCBs from PCB sulfates.

Medium- and Short-Chain Chlorinated Paraffins in Mature Maize Plants and Corresponding Agricultural Soils.

For the most complex artificial chlorinated environmental contaminants, much less is known for medium-chain CPs than short-chain CPs. In this research, the spatial distributions of MCCPs and SCCPs in farmland soil and maize leaves near a CP production facility were found marginally influenced by seasonal winds. The levels of ∑MCCPs and ∑SCCPs were in the ranges of <1.51-188 and 5.41-381 ng/g dw for soils; and 77.6-52930 and 119-61999 ng/g dw for maize leaf, respectively. Bioaccumulation and tissue distributions of the CPs within maize plants were specifically analyzed. Most of the CPs were contained in the tissues directly exposed to airborne CPs. Though the estimated risk of CPs to humans through ingestion of kernels appears to be minimal, the edible safety of MCCPs in maize plants for cattle was nearly in the designated range of adverse effects. To our knowledge, this is the first report on bioaccumulation of CPs in mature maize plants, especially in the parts eaten by humans and domestic animals. It provides a baseline reference to the edible risks of CPs in agricultural food plants and alerts us to the problematic environmental behavior of MCCPs, a probable future replacement for SCCPs commercially.

Compartmentalization and Excretion of 2,4,6-Tribromophenol Sulfation and Glycosylation Conjugates in Rice Plants.

The most environmentally abundant bromophenol congener, 2,4,6-tribromophenol (2,4,6-TBP, 6.06 µmol/L), was exposed to rice for 5 d both in vivo (intact seedling) and in vitro (suspension cell) to systematically characterize the fate of its sulfation and glycosylation conjugates in rice. The 2,4,6-TBP was rapidly transformed to produce 6 [rice cells (3 h)] and 8 [rice seedlings (24 h)] sulfated and glycosylated conjugates. The predominant sulfation conjugate (TP408, 93.0-96.7%) and glycosylation conjugate (TP490, 77.1-90.2%) were excreted into the hydroponic solution after their formation in rice roots. However, the sulfation and glycosylation conjugates presented different translocation and compartmentalization behaviors during the subsequent Phase III metabolism. Specifically, the sulfated conjugate could be vertically transported into the leaf sheath and leaf, while the glycosylation conjugates were sequestered in cell vacuoles and walls, which resulted in exclusive compartmentalization within the rice roots. These results showed the micromechanisms of the different compartmentalization behaviors of 2,4,6-TBP conjugates in Phase III metabolism. Glycosylation and sulfation of the phenolic hydroxyl groups orchestrated by plant excretion and Phase III metabolism may reduce the accumulation of 2,4,6-TBP and its conjugates in rice plants.

Dataset describing biodegradation of individual polychlorinated biphenyl congeners (PCBs) by Paraburkholderia xenovorans LB400 in presence and absence of sediment slurry.

This dataset describes the biodegradation of polychlorinated biphenyl (PCB) congeners by Paraburkholderia xenovorans LB400 in absence and presence of PCB-contaminated sediment slurry, over time [1]. In absence of sediment, PCBs were extracted from aqueous bioreactors by liquid-liquid extraction (LLE) with hexane. In presence of sediment, the extraction method used was a modification of U.S. EPA Method 3545 [3]. Sediment slurry samples were extracted from bioreactors using pressurized fluid extraction (Accelerated Solvent Extractor; Dionex ASE-200) with equal parts acetone and hexane. GC-MS/MS triple quadrapole technology in multiple reaction monitoring mode (MRM) was used for identification and quantification of 209 PCBs as 174 chromatographic peaks. Samples were processed in batches of five along with one method blank per batch. All materials used in sample extraction had either been triple rinsed with solvent (methanol, acetone, and hexane) or combusted overnight at 450 °C to prevent background PCB contamination. Results from the method blanks were used to determine the limit of quantification (LOQ) as the upper limit of the 95% confidence interval (average mass plus two times the standard deviation). PCB congener masses were corrected for surrogate recoveries less than 100%. The PCB concentration dataset was dichotomized at the threshold of the congener specific LOQ. Concentrations of congeners below the LOQ were treated as zero. During analysis, PCB concentration data was filtered to include only congeners belonging to the commercial PCB mixture, Aroclor 1248. LOQ corrected data can inform future experimental design and be reused by other researchers for further analysis and / or interpretive insights.

Biodegradation of PCB congeners by Paraburkholderia xenovorans LB400 in presence and absence of sediment during lab bioreactor experiments.

Experiments were conducted to measure biodegradation of polychlorinated biphenyl (PCB) congeners contained in mixture Aroclor 1248 and congeners present in wastewater lagoon sediment contaminated decades earlier at Altavista, Virginia. A well-characterized strain of aerobic PCB-degrading bacteria, Paraburkholderia xenovorans LB400 was incubated in laboratory bioreactors with PCB-contaminated sediment collected at the site. The experiments evaluated strain LB400's ability to degrade PCBs in absence of sediment and in PCB-contaminated sediment slurry. In absence of sediment, LB400 transformed 76% of Aroclor 1248 within seven days, spanning all homolog groups present in the mixture. In sediment slurry, only mono- and di-chlorinated PCB congeners were transformed. These results show that LB400 is capable of rapidly biodegrading most PCB congeners when they are freely dissolved in liquid but cannot degrade PCB congeners having three or more chlorine substituents in sediment slurry. Finally, using GC/MS-MS triple quadrupole spectrometry, this work distinguishes between physical (sorption to cells) and biological removal mechanisms, illuminates the process by which microorganisms with LB400-type congener specificity can selectively transform lower-chlorinated congeners over time, and makes direct comparisons to other studies where individual congener data is reported.