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1.
Front Robot AI ; 11: 1328467, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38721395

RESUMEN

Social-educational robotics, such as NAO humanoid robots with social, anthropomorphic, humanlike features, are tools for learning, education, and addressing developmental disorders (e.g., autism spectrum disorder or ASD) through social and collaborative robotic interactions and interventions. There are significant gaps at the intersection of social robotics and autism research dealing with how robotic technology helps ASD individuals with their social, emotional, and communication needs, and supports teachers who engage with ASD students. This research aims to (a) obtain new scientific knowledge on social-educational robotics by exploring the usage of social robots (especially humanoids) and robotic interventions with ASD students at high schools through an ASD student-teacher co-working with social robot-social robotic interactions triad framework; (b) utilize Business Model Canvas (BMC) methodology for robot design and curriculum development targeted at ASD students; and (c) connect interdisciplinary areas of consumer behavior research, social robotics, and human-robot interaction using customer discovery interviews for bridging the gap between academic research on social robotics on the one hand, and industry development and customers on the other. The customer discovery process in this research results in eight core research propositions delineating the contexts that enable a higher quality learning environment corresponding with ASD students' learning requirements through the use of social robots and preparing them for future learning and workforce environments.

2.
Sci Rep ; 14(1): 9758, 2024 04 29.
Artículo en Inglés | MEDLINE | ID: mdl-38684820

RESUMEN

Our investigation revealed that alterations in sulphur (S) pools are predominantly governed by soil organic carbon (SOC), soil nitrogen (N), microbial biomass, and soil enzyme activities in sandy clay loam (Vertic Ustropept) soil. We employed ten sets of nutrient management techniques, ranging from suboptimal (50% RDF) to super-optimal doses (150% RDF), including NPK + Zn, NP, N alone, S-free NPK fertilizers, NPK + FYM, and control treatments, to examine the interrelation of S with SOC characteristics. Fourier-transform infrared (FT-IR) spectroscopy was utilized to analyze the functional groups present in SOC characterization across four treatments: 100% NPK, 150% NPK, NPK + FYM, and absolute control plots. Principal component analysis (PCA) was then applied to assess 29 minimal datasets, aiming to pinpoint specific soil characteristics influencing S transformation. In an Inceptisol, the application of fertilizers (100% RDF) in conjunction with 10 t ha-1 of FYM resulted in an increase of S pools from the surface to the subsurface stratum (OS > HSS > SO42--S > WSS), along with an increase in soil N and SOC. FT-IR spectroscopy identified cellulose and thiocyanate functional groups in all four plots, with a pronounced presence of carbohydrate-protein polyphenol, sulfoxide (S=O), and nitrate groups specifically observed in the INM plot. The PCA findings indicated that the primary factors influencing soil quality and crop productivity (r2 of 0.69) are SOC, SMBC, SMBN, SMBS, and the enzyme activity of URE, DHA, and AS. According to the study, the combined application of fertilizer and FYM (10 t ha-1) together exert a positive impact on sulphur transformation, SOC accumulation, and maize yield in sandy clay loam soil.


Asunto(s)
Carbono , Fertilizantes , Nitrógeno , Suelo , Azufre , Zea mays , Fertilizantes/análisis , Azufre/metabolismo , Azufre/análisis , Suelo/química , Carbono/metabolismo , Carbono/análisis , Zea mays/metabolismo , Zea mays/crecimiento & desarrollo , Nitrógeno/metabolismo , Nitrógeno/análisis , Espectroscopía Infrarroja por Transformada de Fourier , Mijos/metabolismo , Biomasa , Agricultura/métodos , Microbiología del Suelo , Productos Agrícolas/crecimiento & desarrollo , Productos Agrícolas/metabolismo
3.
J Biomol Struct Dyn ; : 1-14, 2023 Sep 05.
Artículo en Inglés | MEDLINE | ID: mdl-37667900

RESUMEN

Herein, the interaction of an antidiabetic drug, metformin hydrochloride (MHCl), and a cationic surfactant, cetylpyridinium bromide (CPB) is investigated in an aqueous medium. The critical micellar concentration (CMC) of CPB is estimated through conductivity experiments and found to be reduced on adding MHCl and further decreased in the presence of NaCl. The reduced CMC is attributed to the solubilization of MHCl by CPB through micellization and the micellization is found to be thermodynamically spontaneous that experiences an augmentation in the presence of NaCl. This is identified from the negative value of standard free energy (ΔG0m). The higher negative value of ΔG0m (-55.41 kJ mol-1) for CPB + MHCl + NaCl than CPB (-37.89 kJ mol-1) and CPB + MHCl (-34.08 kJ mol-1) is suggestive of the above phenomenon. The positive values of ΔS0m in all three cases confirm that the micellization is entropy driven. The binding of MHCl on CPB is quantified by estimating binding constant using the Benesi-Hildebrand (B-H) plot through UV-visible spectral methods. The binding constant values were calculated to be 2.70 M-1 for CPB + MHCl + NaCl compared to 1.258 M-1 for CPB + MHCl predicting a favoring of micellization in the presence of NaCl which is higher than that in the presence of co-solvents. The molecular interaction of MHCl and CPB is justified using FT-IR and NMR techniques. The surface properties of drug surfactant interactions are assessed using SEM techniques. The point of interaction between the drug and surfactant is visualized through the molecular docking approach. The results suggest that CPB would be an effective solubilizer for developing MHCl drug formulations.Communicated by Ramaswamy H. Sarma.

4.
Cells ; 12(6)2023 03 07.
Artículo en Inglés | MEDLINE | ID: mdl-36980166

RESUMEN

High glucose (HG), a hallmark of the tumour microenvironment, is also a biomechanical stressor, as it exerts hyper-osmotic stress (HG-HO), but not much is known regarding how tumour cells mechanoadapt to HG-HO. Therefore, this study aimed to delineate the novel molecular mechanisms by which tumour cells mechanoadapt to HG/HG-HO and whether phytochemical-based interference in these mechanisms can generate tumour-cell-selective vulnerability to cell death. Mannitol and L-glucose were used as hyper-osmotic equivalents of high glucose. The results revealed that the tumour cells can efficiently mechanoadapt to HG-HO only in the normoxic microenvironment. Under normoxic HG/HG-HO stress, tumour cells polySUMOylate a higher pool of mitotic driver pH3(Ser10), which translocates to the nucleus and promotes faster cell divisions. On the contrary, acute hypoxia dampens HG/HG-HO-associated excessive proliferation by upregulating sentrin protease SENP7. SENP7 promotes abnormal SUMOylation of pH3(Ser10), thereby restricting its nuclear entry and promoting the M-phase arrest and cell loss. However, the hypoxia-arrested cells that managed to survive showed relapse upon reversal to normoxia as well as upregulation of pro-survival-associated SENP1, and players in tumour growth signalling, autophagy, glycolytic pathways etc. Depletion of SENP1 in both normoxia and hypoxia caused significant loss of tumour cells vs undepleted controls. SENP1 was ascertained to restrict the abnormal SUMOylation of pH3(Ser10) in both normoxia and hypoxia, although not so efficiently in hypoxia, due to the opposing activity of SENP7. Co-treatment with Momordin Ic (MC), a natural SENP1 inhibitor, and Gallic Acid (GA), an inhibitor of identified major pro-tumourigenic signalling (both enriched in Momordica charantia), eliminated surviving tumour cells in normal glucose, HG and HG-HO normoxic and hypoxic microenvironments, suggesting that appropriate and enhanced polySUMOylation of pH3(Ser10) in response to HG/HG-HO stress was attenuated by this treatment along with further dampening of other key tumourigenic signalling, due to which tumour cells could no longer proliferate and grow.


Asunto(s)
Neoplasias , Humanos , Presión Osmótica , Neoplasias/tratamiento farmacológico , Glucosa/metabolismo , Carcinogénesis , Transformación Celular Neoplásica , Hipoxia , Oxígeno , Microambiente Tumoral
5.
J Ethnopharmacol ; 309: 116366, 2023 Jun 12.
Artículo en Inglés | MEDLINE | ID: mdl-36914036

RESUMEN

ETHNOPHARMACOLOGICAL RELEVANCE: Sauropus androgynus is a medicinal shrub used for the treatment of fever in ethnomedical traditions in various Southeast Asian countries. AIM OF THE STUDY: This study was aimed to identify antiviral principles from S. androgynus against Chikungunya virus (CHIKV), a major mosquito-borne pathogen that re-emerged in the last decade, and to unravel their mechanism of action. MATERIALS AND METHODS: Hydroalcoholic extract of S. androgynus leaves was screened for anti-CHIKV activity using cytopathic effect (CPE) reduction assay. The extract was subjected to activity guided isolation and the resultant pure molecule was characterized by GC-MS, Co-GC and Co-HPTLC. The isolated molecule was further evaluated for its effect by plaque reduction assay, Western blot and immunofluorescence assays. In silico docking with CHIKV envelope proteins and molecular dynamics simulation (MD) analyses were used to elucidate its possible mechanism of action. RESULTS: S. androgynus hydroalcoholic extract showed promising anti-CHIKV activity and its active component, obtained by activity guided isolation, was identified as ethyl palmitate (EP), a fatty acid ester. At 1 µg/mL, EP led to 100% inhibition of CPE and a significant 3 log10 reduction in CHIKV replication in Vero cells at 48 h post-infection. EP was highly potent with an EC50 of 0.0019 µg/mL (0.0068 µM) and a very high selectivity index. EP treatment significantly reduced viral protein expression, and time of addition studies revealed that it acts at the stage of viral entry. A strong binding to the viral envelope protein E1 homotrimer during entry, thus preventing viral fusion, was identified as a possible mechanism by which EP imparts its antiviral effect. CONCLUSIONS: S. androgynus contains EP as a potent antiviral principle against CHIKV. This justifies the use of the plant against febrile infections, possibly caused by viruses, in various ethnomedical systems. Our results also prompt more studies on fatty acids and their derivatives against viral diseases.


Asunto(s)
Fiebre Chikungunya , Virus Chikungunya , Plantas Medicinales , Animales , Chlorocebus aethiops , Virus Chikungunya/fisiología , Células Vero , Línea Celular , Fiebre Chikungunya/tratamiento farmacológico , Fiebre Chikungunya/metabolismo , Replicación Viral , Antivirales/farmacología , Antivirales/uso terapéutico , Antivirales/química , Extractos Vegetales/farmacología , Extractos Vegetales/uso terapéutico , Medicina Tradicional
6.
Chemosphere ; 311(Pt 1): 136928, 2023 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-36272623

RESUMEN

The use of dyes and segments has increased widely in recent years, but it poses a serious health risk to ecosystems. In this work, TiO2 and two-dimensional g-C3N4 nanosheets (g-CN) were fabricated through co-precipitation and thermal polymerization technique, respectively. The g-CN-TiO2 photocatalyst (1: 3, 2: 2, 3: 1) in various weight percentages was prepared using a simple impregnation process. The photocatalytic behaviour of the g-CN, TiO2 NPs, and different weight percentages of g-CN-TiO2 photocatalyst was evaluated against methylene blue (MB) dye under UV-visible light illumination. Compared to pristine and other weight percentages of the g-CN-TiO2 nanocomposite, the optimized g-CN-TiO2 nanocomposite (3:1) showed promoted performance against MB dye. The enriched catalytic efficiency can be accredited to the low amount of TiO2 nanoparticles deposited on gCN nanosheets, possibly due to the boosted transport properties of the electron-hole pairs. The enriched photocatalytic behaviour can be attributed to the development of the Z-scheme system between TiO2 and g-CN. The current study is an outstanding demonstration of the development of maximum catalytic efficiency for destroying hazardous chemical dyes.


Asunto(s)
Colorantes , Contaminantes Ambientales , Colorantes/química , Ecosistema , Titanio/química , Azul de Metileno/química
7.
Fish Shellfish Immunol Rep ; 3: 100054, 2022 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-36419602

RESUMEN

Interferon Stimulated Gene (ISG)15 is a ubiquitin-like protein that is induced upon viral infections. Our study reports the identification of two homologues of ISG15 in the Asian seabass designated LcISG15A and LcISG15B. The cloned LcISG15A cDNA fragment contained a 474 bp ORF encoding a 157 amino acid protein whereas LcISG15B featured a 498 bp ORF encoding a slightly longer protein of 165 amino acids. Both proteins featured the two tandem ubiquitin-like domains and the C-terminal LRGG motif characteristic of ISG15. The LcISG15B protein has a 10-amino acid C-terminal extension after the LRGG motif. Molecular docking studies revealed that LcISG15A showed more conformational variability of the ubiquitin domains and catalytic function than LcISG15B. The Lates ISG15A and ISG15B genes, reside close in the genome, share the same basic structure with two exons and an intron, but only the second exon encoding the protein. These genes also featured the IFN-stimulatory response elements (ISRE) in the promoter region and ATTTA instability motif in the 3' UTR region. Leukocyte-rich organs such as the head kidney, heart, spleen, and gill showed higher levels of ISG15A and ISG15B basal expression. Poly (I:C) injection rapidly upregulated the transcription of both the ISG15 genes in these tissues in Lates. In-vivo viral infection by red-spotted grouper nervous necrosis virus also induced upregulation of ISG15 genes in the head kidney, spleen, heart and gill. These findings indicate that the two ISG15 homologues may play a crucial role in innate antiviral immunity and could be used to improve prophylactic strategies and develop species-specific immunological tools for Lates calcarifer.

8.
Microbiol Res ; 265: 127217, 2022 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-36206648

RESUMEN

Soil salinization is a major stress affecting crop production on a global scale. Application of stress tolerant plant growth promoting rhizobacteria (PGPR) in saline soil can be an ideal practice for improving soil fertility. Rhizospheric microbiota of stress tolerant Eichhornia crassipes was screened for saline tolerant phosphate solubilizing bacteria, and the two isolates showing maximum solubilization index at 1 M NaCl were subjected to further analyses. The isolates were identified as Pantoea dispersa and Pseudomonas aeruginosa. Among the two isolates, P. dispersa PSB1 showed better phosphorus (P) solubilization potential under saline stress (335 ± 30 mg/L) than P. aeruginosa PSB5 (200 ± 24 mg/L). The mechanisms of P-solubilization, such as the production of organic acids and phosphatase were found to be influenced negatively by saline stress. The adaptive mechanisms of the isolates to overcome salt stress were analyzed by protein profiling which revealed salt stress induced modulations in protein expression involved in amino acid biosynthesis, carbon metabolisms, chemotaxis, and stress responses. Survival mechanisms such as protein RecA, LexA repressor and iron-sulfur cluster synthesis were upregulated in both the organisms under saline stress. P. dispersa PSB1 showed improved defense mechanisms such as the production of osmotolerants, redox enzymes, and quorum quenchers under saline stress, which may explain its better P solubilization potential than the P. aeruginosa PSB5. This study emphasizes the need for molecular approaches like proteome analysis of PGPR for identifying novel traits like stress tolerance and plant growth promotion before developing them as biofertilizers and biocontrol formulations.


Asunto(s)
Eichhornia , Pantoea , Aminoácidos/metabolismo , Carbono/metabolismo , Eichhornia/metabolismo , Hierro/metabolismo , Pantoea/metabolismo , Fosfatos/metabolismo , Monoéster Fosfórico Hidrolasas/metabolismo , Fósforo/metabolismo , Proteoma/metabolismo , Proteómica , Pseudomonas/metabolismo , Rizosfera , Cloruro de Sodio/metabolismo , Suelo/química , Microbiología del Suelo , Azufre/metabolismo
9.
New Gener Comput ; 40(4): 1241-1279, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36101778

RESUMEN

In this computer world, huge data are generated in several fields. Statistics in the healthcare engineering provides data about many diseases and corresponding patient's information. These data help to evaluate a huge amount of data for identifying the unknown patterns in the diseases and are also utilized for predicting the disease. Hence, this work is to plan and implement a new computer-aided technique named modified Ensemble Learning with Weighted RBM Features (EL-WRBM). Data collection is an initial process, in which the data of various diseases are gathered from UCI repository and Kaggle. Then, the gathered data are pre-processed by missing data filling technique. Then, the pre-processed data are performed by deep belief network (DBN), in which the weighted features are extracted from the RBM regions. Then, the prediction is made by ensemble learning with classifiers, namely, support vector machine (SVM), recurrent neural network (RNN), and deep neural network (DNN), in which hyper-parameters are optimized by the adaptive spreading rate-based coronavirus herd immunity optimizer (ASR-CHIO). At the end, the simulation analysis reveals that the suggested model has implications to support doctor diagnoses.

10.
Chemosphere ; 307(Pt 3): 135951, 2022 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-35964724

RESUMEN

Water pollution is a serious problem that threatens both developed and developing countries. Several methods have been used to purify contaminated water, among which the photocatalytic decomposition approach is widely used to purify contaminated water from organic pollutants. In this work, biomass derived SiO2 nanoparticles composite with TiO2 semiconductors used as an efficient photocatalyst for degradation of RhB dye molecules under UV-visible light irradiation is proclaimed. The different weight percentages of Arundo donax L. ash-derived SiO2 nanoparticles combined with TiO2 nanoparticles were prepared through the wet impregnation method. The photocatalytic degradation ability of the as-prepared samples has been scrutinized against the degradation of Rh B dye in which the pronounced photocatalytic degradation efficiency 93.7% is successfully achieved on 50 wt % SiO2-50 wt % TiO2 nanocomposite photocatalyst. The catalytic performance of the nanocomposite decreases with an increase of 50%-75% in SiO2 nanoparticles. There could have been a decrease in degradation efficiency due to an excess amount of SiO2 covering TiO2 nanoparticles, which prevented photons from reaching the nanoparticles. The efficiency of cyclic decomposition of the 50 wt% SiO2-50 wt% TiO2 composite showed only a slight change in photocatalytic capacity compared to the first cycle, which ensures the durability of the sample. However, the hydroxyl radical species play the main role in the degradation process, which has been confirmed by the scavenger test. The probable reaction mechanism is also deliberated in detail. The high photocatalytic performance of novel eco-friendly SiO2-TiO2 photocatalyst make it ideal for water purification applications.


Asunto(s)
Nanocompuestos , Nanopartículas , Contaminantes Químicos del Agua , Catálisis , Radical Hidroxilo , Poaceae , Dióxido de Silicio , Titanio/efectos de la radiación , Agua
11.
Int J Nanomedicine ; 17: 2203-2224, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35599751

RESUMEN

Purpose: The brain, protected by the cranium externally and the blood-brain barrier (BBB) internally, poses challenges in chemotherapy of aggressive brain tumors. Maximal tumor resection followed by radiation and chemotherapy is the standard treatment protocol; however, a substantial number of patients suffer from recurrence. Systemic circulation of drugs causes myelodysplasia and other side effects. To address these caveats, we report facile synthesis of a polyester-based supramolecular hydrogel as a brain biocompatible implant for in situ delivery of hydrophobic drugs. Methods: Polycaprolactone-diol (PCL) was linked to polyethyleneglycol-diacid (PEG) via an ester bond. In silico modeling indicated micelle-based aggregation of PCL-PEG co-polymer to form a supramolecular hydrogel. Brain biocompatibility was checked in Sprague Dawley rat brain cortex with MRI, motor function test, and histology. Model hydrophobic drugs carmustine and curcumin entrapment propelled glioma cells into apoptosis-based death evaluated by in vitro cytotoxicity assays and Western blot. In vivo post-surgical xenograft glioma model was developed in NOD-SCID mice and evaluated for efficacy to restrict aggressive regrowth of tumors. Results: 20% (w/v) PCL-PEG forms a soft hydrogel that can cover the uneven and large surface area of a tumor resection cavity and maintain brain density. The PCL-PEG hydrogel was biocompatible, and well-tolerated upon implantation in rat brain cortex, for a study period of 12 weeks. We report for the first time the combination of carmustine and curcumin entrapped as model hydrophobic drugs, increasing their bioavailability and yielding synergistic apoptotic effect on glioma cells. Further in vivo study indicated PCL-PEG hydrogel with a dual cargo of carmustine and curcumin restricted aggressive regrowth post-resection significantly compared with control and animals with intravenous drug treatment. Conclusion: PCL-PEG soft gel-based implant is malleable compared with rigid wafers used as implants, thus providing larger surface area contact. This stable, biocompatible, supramolecular gel without external crosslinking can find wide applications by interchanging formulation of various hydrophobic drugs to ensure and increase site-specific delivery, avoiding systemic circulation.


Asunto(s)
Curcumina , Glioma , Animales , Materiales Biocompatibles/química , Carmustina , Curcumina/química , Sistemas de Liberación de Medicamentos , Glioma/tratamiento farmacológico , Humanos , Hidrogeles/química , Ratones , Ratones Endogámicos NOD , Ratones SCID , Polietilenglicoles/química , Ratas , Ratas Sprague-Dawley
12.
Mar Pollut Bull ; 176: 113409, 2022 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-35168068

RESUMEN

Marina beach in Chennai metropolitan city attracts numerous tourists from all around the world, and it is an important ecological habitat for many life forms. Rapid urbanisation and industrial developments have led to excessive use of plastics and increased the amount of plastic waste generated in the natural environment. This first baseline study evaluates the microplastic (MP) accumulation in beach surface sediments of Marina and Pattinapakkam beaches through FTIR, AFM and SEM analyses. Sediment samples were collected from 40 stations and different types of MP polymers were identified. On average, 459 (60.8%) and 297 (39.2%) MP particles were found in the samples from Marina and Pattinapakkam beaches, respectively. We found that polyethylene types and additives are the dominant MPs in both areas. This study provided us with new insights into the human activities and natural processes in these marine environments. To solve the problem of plastic accumulation in the marine environment, the government should first play an active role in addressing the problem of plastic waste by introducing laws to control the sources of plastic waste and the use of plastic additives.


Asunto(s)
Microplásticos , Contaminantes Químicos del Agua , Monitoreo del Ambiente , Sedimentos Geológicos/análisis , Humanos , India , Plásticos/análisis , Contaminantes Químicos del Agua/análisis
13.
Front Immunol ; 12: 740620, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34867962

RESUMEN

While the immunomodulatory pathways initiated in immune cells contribute to therapeutic response, their activation in cancer cells play a role in cancer progression. Also, many of the aberrantly expressed immunomodulators on cancer cells are considered as therapeutic targets. Here, we introduce host defense peptide (HDP), a known immuomodulator, as a therapeutic agent to target them. The cationic host defense peptides (HDPs), an integral part of the innate immune system, possess membranolytic activity, which imparts antimicrobial and antitumor efficacy to it. They act as immunomodulators by activating the immune cells. Though their antimicrobial function has been recently reassigned to immunoregulation, their antitumor activity is still attributed to its membranolytic activity. This membrane pore formation ability, which is proportional to the concentration of the peptide, also leads to side effects like hemolysis, limiting their therapeutic application. So, despite the identification of a variety of anticancer HDPs, their clinical utility is limited. Though HDPs are shown to exert the immunomodulatory activity through specific membrane targets on immune cells, their targets on cancer cells are unknown. We show that SSTP1, a novel HDP identified by shotgun cloning, binds to the active IL6/IL6Rα/gp130 complex on cancer cells, rearranging the active site residues. In contrast to the IL6 blockers inhibiting JAK/STAT activity, SSTP1 shifts the proliferative IL6/JAK/STAT signaling to the apoptotic IL6/JNK/AP1 pathway. In IL6Rα-overexpressing cancer cells, SSTP1 induces apoptosis at low concentration through JNK pathway, without causing significant membrane disruption. We highlight the importance of immunomodulatory pathways in cancer apoptosis, apart from its established role in immune cell regulation and cancer cell proliferation. Our study suggests that identification of the membrane targets for the promising anticancer HDPs might lead to the identification of new drugs for targeted therapy.


Asunto(s)
Proteínas Anfibias/inmunología , Péptidos Catiónicos Antimicrobianos/inmunología , Anuros , Apoptosis/inmunología , Interleucina-6/inmunología , Neoplasias/inmunología , Animales , Línea Celular Tumoral , Humanos
14.
Future Microbiol ; 16(3): 175-184, 2021 02.
Artículo en Inglés | MEDLINE | ID: mdl-33528277

RESUMEN

Aim:Enterococcus faecalis is a leading nosocomial pathogen in biofilm-associated polymicrobial infections. The study aims to understand pathogenicity and biofilm determinants of the pathogen by genome analysis. Methodology: Genome sequencing of a strong biofilm forming clinical isolate Enterococcus faecalis SK460 devoid of Fsr quorum-signaling system, was performed and comparative genomics was carried out among a set of pathogenic biofilm formers and nonpathogenic weak biofilm formers. Results: Analysis revealed a pool of virulence and adhesion related factors associated with pathogenicity. Absence of CRISPR-Cas system facilitated acquisition of pheromone responsive plasmid, pathogenicity island and phages. Comprehensive analysis identified a subset of accessory genes encoding polysaccharide lyase, sugar phosphotransferase system, phage proteins and transcriptional regulators exclusively in pathogenic biofilm formers. Conclusion: The study identified a set of genes specific to pathogenic biofilm formers and these can act as targets which in turn help to develop future treatment endeavors against enterococcal infections.


Asunto(s)
Proteínas Bacterianas/genética , Biopelículas , Enterococcus faecalis/genética , Enterococcus faecalis/patogenicidad , Proteínas Bacterianas/metabolismo , Sistemas CRISPR-Cas , Enterococcus faecalis/fisiología , Genoma Bacteriano , Islas Genómicas , Infecciones por Bacterias Grampositivas/microbiología , Humanos , Plásmidos/genética , Plásmidos/metabolismo , Virulencia
15.
Environ Monit Assess ; 193(3): 124, 2021 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-33587188

RESUMEN

Deciphering land use and land cover (LULC) change patterns, identifying the variables that act as the major driving forces of change, and predicting possible changes are necessary tools of decision support for policymakers. Estuarine landscapes world over are under extreme pressure of developmental activities because of their resources. The developmental activities lead to unforeseen changes in the traditional land use practices, making it necessary for investigation of the possible outcomes. The present study aims to study the changing pattern of LULC in the East Godavari River Estuarine Ecosystem (EGREE) landscape during 1977-2015 using temporal satellite data and to predict the possible LULC changes by 2029. Cellular Automata-Markov model (CAMM) with and without the multi-criteria evaluator (MCE) and the multi-layer perceptron (MLP) models were used for future LULC prediction. Between 1977 and 2015, mangroves were converted to aquaculture (5.81 km2) on the landward side and were also lost to submergence at the seaward side (15 km2). All of the coastal scrub (69 km2) was lost to beach clearing. Over this period, the aquaculture area rose to 177 km2. The CAMM with MCE was found to yield better predictions. A further rise was predicted in aquaculture (16%), built-up (30%), and Casuarina plantations (28%) by 2029. The study highlighted the LULC change patterns in EGREE, an important estuarine landscape of India. The information generated in this study can act as baseline information for the stakeholders and policy makers in decision-making of developmental projects, land acquisition, and diversion of agricultural land to non-agricultural purposes.


Asunto(s)
Conservación de los Recursos Naturales , Ecosistema , Agricultura , Monitoreo del Ambiente , India
16.
Artículo en Inglés | MEDLINE | ID: mdl-33106268

RESUMEN

Isoniazid (INH), one of the first-line drugs used for the treatment of tuberculosis, is a prodrug which is activated by the intracellular KatG enzyme of Mycobacterium tuberculosis The activated drug hinders cell wall biosynthesis by inhibiting the InhA protein. INH-resistant strains of M. tuberculosis usually have mutations in katG, inhA, ahpC, kasA, and ndh genes. However, INH-resistant strains which do not have mutations in any of these genes are reported, suggesting that these strains may adopt some other mechanism to become resistant to INH. In the present study, we characterized Rv2170, a putative acetyltransferase in M. tuberculosis, to elucidate its role in inactivating isoniazid. The purified recombinant protein was able to catalyze the transfer of the acetyl group to INH from acetyl coenzyme A (acetyl-CoA). High-performance liquid chromatography (HPLC) and liquid chromatography-mass spectrometry (LC-MS) analyses showed that following acetylation by Rv2170, INH is broken down into isonicotinic acid and acetylhydrazine. A drug susceptibility assay and confocal analysis showed that Mycobacterium smegmatis, which is susceptible to INH, is not inhibited by INH acetylated with Rv2170. Mutant proteins of Rv2170 failed to acetylate INH. Recombinant M. smegmatis and M. tuberculosis H37Ra overexpressing Rv2170 were found to be resistant to INH at MICs that inhibited wild-type strains. Besides, intracellular M. tuberculosis H37Ra overexpressing Rv2170 survived better in macrophages when treated with INH. Our results strongly indicate that Rv2170 acetylates INH, and this could be one of the strategies adopted by at least some M. tuberculosis strains to overcome INH toxicity, although this needs to be tested in INH-resistant clinical strains.


Asunto(s)
Isoniazida , Mycobacterium tuberculosis , Acetilación , Antituberculosos/farmacología , Proteínas Bacterianas/genética , Catalasa/genética , Farmacorresistencia Bacteriana/genética , Isoniazida/farmacología , Pruebas de Sensibilidad Microbiana , Mutación , Mycobacterium tuberculosis/genética
17.
Mitochondrial DNA A DNA Mapp Seq Anal ; 31(8): 365-378, 2020 12.
Artículo en Inglés | MEDLINE | ID: mdl-33030068

RESUMEN

The evolutionary potential of a species mainly depends on the level of genetic variation in their populations. Maintenance of gene variation enables populations to adapt more quickly to environmental changes. The geographical gaps also influence the distribution and evolutionary history of many mountain frogs in the world. Hence, a sound knowledge in population genetic structure of a species will help understand its population dynamics and develop conservation strategies. In the context of facing threats to the amphibian fauna of Western Ghats due to habitat loss, we used both mitochondrial and nuclear DNA markers to investigate the genetic structure of an endemic frog species of the Western Ghats (Indirana semipalmata) with restricted distribution. The present study showed the importance of mountain gaps in shaping the species' structuring in the Western Ghats. Though a high genetic diversity was observed for the species when considering a single unit in the southern Western Ghats, the restricted gene flow on/between either side of the Shencottah gap with genetic clustering of the sampled populations may warrant a unique management plan for the species. The habitat fragmentation of the Western Ghats through anthropogenic activities may result in severe setbacks to the survival of the species in the future.


Asunto(s)
Anuros/clasificación , Núcleo Celular/genética , ADN/genética , Mitocondrias/genética , Animales , Anuros/genética , Conservación de los Recursos Naturales , Evolución Molecular , Flujo Génico , Genética de Población , India , Filogenia , Análisis de Secuencia de ADN
18.
Microb Pathog ; 149: 104538, 2020 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-32987116

RESUMEN

Vibrio cholerae, causative agent of the water-borne disease cholera still threatens a large proportion of world's population. The major biotypes of the pathogen are classical and El Tor. There have been recent reports of variant V. cholerae strains circulating around the world. In the present study, the epidemiological status of V. cholerae strains circulating in the country over a decade was assessed. Also, a comprehensive analysis of the difference in pathogenicity between the different biotypes of V. cholerae strains was evaluated both in-vitro and in-vivo. The amount of CT produced by different biotypes of V. cholerae strains were analyzed by GM1 ELISA and the probable reasons for the difference in toxin production was discussed. MLST analysis grouped the isolates into a single Sequence Type (ST 69) whereas PFGE analysis clustered the isolates into ten different pulsotypes revealing molecular diversity. The circulating strains were identified to produce cholera toxin and CT mRNA intermediate to the classical and prototype El Tor strains. Also, the circulating strains were identified to possess four ToxR binding sequences. In-vivo pathogenicity analysis by rabbit ileal loop fluid accumulation assay revealed the Haitian variant strains to be more hyperemic than the prototype strains.


Asunto(s)
Cólera , Vibrio cholerae O1 , Animales , Cólera/epidemiología , Toxina del Cólera/genética , Haití , India/epidemiología , Tipificación de Secuencias Multilocus , Conejos , Vibrio cholerae O1/genética
19.
J Biomol Struct Dyn ; 38(5): 1565-1574, 2020 03.
Artículo en Inglés | MEDLINE | ID: mdl-30915917

RESUMEN

Communicated by Ramaswamy H. Sarma.


Asunto(s)
Ciclodextrinas , Excipientes
20.
Bioorg Chem ; 94: 103484, 2020 01.
Artículo en Inglés | MEDLINE | ID: mdl-31796215

RESUMEN

This article briefs about the efforts taken to synthesis, characterize and develop (E)-5-methyl-2-phenyl-3-(thiophen-2-yl)-7-(thiophen-2-ylmethylene)-3,3a,4,5,6,7-hexahydro-2H-pyrazolo[4,3-c]pyridine and their analogs. In the two-step reaction, the first step is the synthesis of (3Z,5E)-1-methyl-3,5-bis(thiophen-2-ylmethylene)piperidin-4-one derivatives (3a-l) by stirring the mixture of 1-methylpiperidin-4-one and substituted thiophene-carbaldehydes in presence of methanol. In the second and final step, compounds 3a-l were refluxed with phenyl-hydrazine to achieve the target compounds (E)-5-methyl-2-phenyl-3-(thiophen-2-yl)-7-(thiophen-2-ylmethylene)-3,3a,4,5,6,7-hexahydro-2H-pyrazolo[4,3-c]pyridine and their analogs (5a-l) in good yield. These compounds were used to assess their inflammation regulation properties in macrophages by executing quantitative pro-inflammatory and anti-inflammatory proteins such as TNF-α, IL-1ß, IL6, and IL-10 respectively. In silico and in vitro COX-2 inhibition studies helped to understand the molecular interaction or plausible mechanism during the inflammation regulation that showed by the compounds. In the results, among the 12-member family of pyrazolo-pyridines (5a-l), 5a, 5b, 5g, and 5j were showed excellent in silico binding affinity (1-10 nM), least binding energy (-12.45 to -14.27 kcal/mol) and in vitro COX-2 inhibition (relative percentage activity maximum 96.42%). Thus, these compounds perhaps to be future anti-inflammatory drugs.


Asunto(s)
Antiinflamatorios no Esteroideos/farmacología , Inhibidores de la Ciclooxigenasa 2/farmacología , Ciclooxigenasa 2/metabolismo , Citocinas/antagonistas & inhibidores , Pirazoles/farmacología , Piridinas/farmacología , Animales , Antiinflamatorios no Esteroideos/síntesis química , Antiinflamatorios no Esteroideos/química , Línea Celular , Supervivencia Celular/efectos de los fármacos , Inhibidores de la Ciclooxigenasa 2/síntesis química , Inhibidores de la Ciclooxigenasa 2/química , Citocinas/biosíntesis , Relación Dosis-Respuesta a Droga , Descubrimiento de Drogas , Humanos , Lipopolisacáridos/antagonistas & inhibidores , Lipopolisacáridos/farmacología , Macrófagos/efectos de los fármacos , Macrófagos/metabolismo , Ratones , Simulación del Acoplamiento Molecular , Estructura Molecular , Pirazoles/química , Piridinas/química , Relación Estructura-Actividad
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