Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 24
Filtrar
Más filtros










Base de datos
Intervalo de año de publicación
1.
bioRxiv ; 2024 Apr 08.
Artículo en Inglés | MEDLINE | ID: mdl-38645108

RESUMEN

Macrophages are pivotal innate immune cells which exhibit high phenotypic plasticity and can exist in different polarization states dependent on exposure to external stimuli. Numerous methods have been employed to simulate macrophage polarization states to test their function in vitro. However, limited research has explored whether these polarization methods yield comparable populations beyond key gene, cytokine, and cell surface marker expression. Here, we employ an unbiased comprehensive analysis using data organized through the all RNA-seq and ChIP-seq sample and signature search (ARCHS4) database, which compiles all RNAseq data deposited into the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA). In silico analyses were carried out demonstrating that commonly employed macrophage polarization methods generate distinct macrophage subsets that remained undescribed until now. Our analyses confirm existing knowledge on macrophage polarization, while revealing nuanced differences between M2a and M2c subpopulations, suggesting non-interchangeable stimuli for M2a polarization. Furthermore, we identify divergent gene expression patterns in M1 macrophages following standard polarization protocols, indicating significant subset distinctions. Consequently, equivalence cannot be assumed among polarization regimens for in vitro macrophage studies, particularly in simulating diverse pathogen responses.

2.
Chem Res Toxicol ; 37(5): 791-803, 2024 May 20.
Artículo en Inglés | MEDLINE | ID: mdl-38652897

RESUMEN

Burn pits are a method of open-air waste management that was common during military operations in Iraq, Afghanistan, and other regions in Southwest Asia. Veterans returning from deployment have reported respiratory symptoms, potentially from exposure to burn pit smoke, yet comprehensive assessment of such exposure on pulmonary health is lacking. We have previously shown that exposure to condensates from burn pit smoke emissions causes inflammation and cytotoxicity in mice. In this study, we explored the effects of burn pit smoke condensates on human airway epithelial cells (HAECs) to understand their impact on cellular targets in the human lung. HAECs were cultured at the air-liquid interface (ALI) and exposed to burn pit waste smoke condensates (plywood, cardboard, plastic, mixed, and mixed with diesel) generated under smoldering and flaming conditions. Cytotoxicity was evaluated by measuring transepithelial electrical resistance (TEER) and lactate dehydrogenase (LDH) release; toxicity scores (TSs) were quantified for each exposure. Pro-inflammatory cytokine release and modulation of gene expression were examined for cardboard and plastic condensate exposures. Burn pit smoke condensates generated under flaming conditions affected cell viability, with flaming mixed waste and plywood exhibiting the highest toxicity scores. Cardboard and plastic smoke condensates modulated cytokine secretion, with GM-CSF and IL-1ß altered in more than one exposure group. Gene expression of detoxifying enzymes (ALDH1A3, ALDH3A1, CYP1A1, CYP1B1, NQO1, etc.), mucins (MUC5AC, MUC5B), and cytokines was affected by several smoke condensates. Particularly, expression of IL6 was elevated following exposure to all burn pit smoke condensates, and polycyclic aromatic hydrocarbon acenaphthene was positively associated with the IL-6 level in the basolateral media of HAECs. These observations demonstrate that exposure to smoke condensates of materials present in burn pits adversely affects HAECs and that aberrant cytokine secretion and altered gene expression profiles following burn pit material smoke exposure could contribute to the development of airway disease.


Asunto(s)
Células Epiteliales , Humo , Humanos , Humo/efectos adversos , Células Epiteliales/efectos de los fármacos , Células Epiteliales/metabolismo , Células Cultivadas , Supervivencia Celular/efectos de los fármacos , Citocinas/metabolismo , Línea Celular , Quema de Residuos al Aire Libre
3.
Am J Physiol Lung Cell Mol Physiol ; 326(1): L83-L97, 2024 01 01.
Artículo en Inglés | MEDLINE | ID: mdl-38084400

RESUMEN

Macrophage populations exist on a spectrum between the proinflammatory M1 and proresolution M2 states and have demonstrated the ability to reprogram between them after exposure to opposing polarization stimuli. Particulate matter (PM) has been repeatedly linked to worsening morbidity and mortality following respiratory infections and has been demonstrated to modify macrophage function and polarization. The purpose of this study was to determine whether diesel exhaust particles (DEP), a key component of airborne PM, would demonstrate polarization state-dependent effects on human monocyte-derived macrophages (hMDMs) and whether DEP would modify macrophage reprogramming. CD14+CD16- monocytes were isolated from the blood of healthy human volunteers and differentiated into macrophages with macrophage colony-stimulating factor (M-CSF). Resulting macrophages were left unpolarized or polarized into the proresolution M2 state before being exposed to DEP, M1-polarizing conditions (IFN-γ and LPS), or both and tested for phagocytic function, secretory profile, gene expression patterns, and bioenergetic properties. Contrary to previous reports, we observed a mixed M1/M2 phenotype in reprogrammed M2 cells when considering the broader range of functional readouts. In addition, we determined that DEP exposure dampens phagocytic function in all polarization states while modifying bioenergetic properties in M1 macrophages preferentially. Together, these data suggest that DEP exposure of reprogrammed M2 macrophages results in a highly inflammatory, highly energetic subpopulation of macrophages that may contribute to the poor health outcomes following PM exposure during respiratory infections.NEW & NOTEWORTHY We determined that reprogramming M2 macrophages in the presence of diesel exhaust particles (DEP) results in a highly inflammatory mixed M1/M2 phenotype. We also demonstrated that M1 macrophages are particularly vulnerable to particulate matter (PM) exposure as seen by dampened phagocytic function and modified bioenergetics. Our study suggests that PM causes reprogrammed M2 macrophages to become a highly energetic, highly secretory subpopulation of macrophages that may contribute to negative health outcomes observed in humans after PM exposure.


Asunto(s)
Infecciones del Sistema Respiratorio , Emisiones de Vehículos , Humanos , Emisiones de Vehículos/toxicidad , Macrófagos/metabolismo , Fenotipo , Diferenciación Celular , Material Particulado/toxicidad
4.
PLoS One ; 18(3): e0279037, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-36862675

RESUMEN

Respiratory macrophage subpopulations exhibit unique phenotypes depending on their location within the respiratory tract, posing a challenge to in vitro macrophage model systems. Soluble mediator secretion, surface marker expression, gene signatures, and phagocytosis are among the characteristics that are typically independently measured to phenotype these cells. Bioenergetics is emerging as a key central regulator of macrophage function and phenotype but is often not included in the characterization of human monocyte-derived macrophage (hMDM) models. The objective of this study was to expand the phenotype characterization of naïve hMDMs, and their M1 and M2 subsets by measuring cellular bioenergetic outcomes and including an expanded cytokine profile. Known markers of M0, M1 and M2 phenotypes were also measured and integrated into the phenotype characterization. Peripheral blood monocytes from healthy volunteers were differentiated into hMDM and polarized with either IFN-γ + LPS (M1) or IL-4 (M2). As expected, our M0, M1, and M2 hMDMs exhibited cell surface marker, phagocytosis, and gene expression profiles indicative of their different phenotypes. M2 hMDMs however were uniquely characterized and different from M1 hMDMs by being preferentially dependent on oxidativte phosphorylation for their ATP generation and by secreting a distinct cluster of soluble mediators (MCP4, MDC, and TARC). In contrast, M1 hMDMs secreted prototypic pro-inflammatory cytokines (MCP1, eotaxin, eotaxin-3, IL12p70, IL-1α, IL15, TNF-ß, IL-6, TNF-α, IL12p40, IL-13, and IL-2), but demonstrated a relatively constitutively heightened bioenergetic state, and relied on glycolysis for ATP generation. These data are similar to the bioenergetic profiles we previously observed in vivo in sputum (M1) and BAL (M2)-derived macrophages in healthy volunteers, supporting the notion that polarized hMDMs can provide an acceptable in vitro model to study specific human respiratory macrophage subtypes.


Asunto(s)
Interleucina-12 , Macrófagos , Humanos , Glucólisis , Fagocitosis , Adenosina Trifosfato
5.
Immunol Cell Biol ; 101(2): 130-141, 2023 02.
Artículo en Inglés | MEDLINE | ID: mdl-36318273

RESUMEN

Protein kinase D (PKD) is a serine/threonine kinase family with three isoforms (PKD1-3) that are expressed in most cells and implicated in a wide array of signaling pathways, including cell growth, differentiation, transcription, secretion, polarization and actin turnover. Despite growing interest in PKD, relatively little is known about the role of PKD in immune responses. We recently published that inhibiting PKD limits proinflammatory cytokine secretion and leukocyte accumulation in mouse models of viral infection, and that PKD3 is highly expressed in the murine lung and immune cell populations. Here we focus on the immune-related phenotypes of PKD3 knockout mice. We report that PKD3 is necessary for maximal neutrophil accumulation in the lung following challenge with inhaled polyinosinic:polycytidylic acid, a double-stranded RNA, as well as following influenza A virus infection. Using reciprocal bone marrow chimeras, we found that PKD3 is required in the hematopoietic compartment for optimal neutrophil migration to the lung. Ex vivo transwell and chemokinesis assays confirmed that PKD3-/- neutrophils possess an intrinsic motility defect, partly because of reduced surface expression of CD18, which is critical for leukocyte migration. Finally, the peak of neutrophilia was significantly reduced in PKD3-/- mice after lethal influenza A virus infection. Together, these results demonstrate that PKD3 has an essential, and nonredundant, role in promoting neutrophil recruitment to the lung. A better understanding of the isoform-specific and cell type-specific activities of PKD has the potential to lead to novel therapeutics for respiratory illnesses.


Asunto(s)
Neutrófilos , Proteína Quinasa C , Virosis , Animales , Ratones , Neutrófilos/metabolismo , Isoformas de Proteínas , Transducción de Señal , Proteína Quinasa C/metabolismo
6.
ISME Commun ; 2(1): 116, 2022 Nov 19.
Artículo en Inglés | MEDLINE | ID: mdl-37938786

RESUMEN

SAR11 bacteria dominate the surface ocean and are major players in converting fixed carbon back to atmospheric carbon dioxide. The SAR11 clade is comprised of niche-specialized ecotypes that display distinctive spatiotemporal transitions. We analyzed SAR11 ecotype seasonality in two long-term 16S rRNA amplicon time series representing different North Atlantic regimes: the Sargasso Sea (subtropical ocean-gyre; BATS) and the temperate coastal Western English Channel (WEC). Using phylogenetically resolved amplicon sequence variants (ASVs), we evaluated seasonal environmental constraints on SAR11 ecotype periodicity. Despite large differences in temperature and nutrient availability between the two sites, at both SAR11 succession was defined by summer and winter clusters of ASVs. The summer cluster was dominated by ecotype Ia.3 in both sites. Winter clusters were dominated by ecotypes Ib and IIa.A at BATS and Ia.1 and IIa.B at WEC. A 2-year weekly analysis within the WEC time series showed that the response of SAR11 communities to short-term environmental fluctuations was variable. In 2016, community shifts were abrupt and synchronized to environmental shifts. However, in 2015, changes were gradual and decoupled from environmental fluctuations, likely due to increased mixing from strong winds. We demonstrate that interannual weather variability disturb the pace of SAR11 seasonal progression.

7.
Inhal Toxicol ; 33(5): 177-192, 2021 04.
Artículo en Inglés | MEDLINE | ID: mdl-34346824

RESUMEN

The airway epithelium represents a crucial line of defense against the spread of inhaled pathogens. As the epithelium is the first part of the body to be exposed to the inhaled environment, it must act as both a barrier to and sentinel against any inhaled agents. Despite its vital role in limiting the spread of inhaled pathogens, the airway epithelium is also regularly exposed to air pollutants which disrupt its normal function. Here we review the current understanding of the structure and composition of the airway epithelial barrier, as well as the impact of inhaled pollutants, including the reactive gas ozone and particulate matter, on epithelial function. We discuss the current in vitro, rodent model, and human exposure findings surrounding the impact of various inhaled pollutants on epithelial barrier function, mucus production, and mucociliary clearance. Detailed information on how inhaled pollutants impact epithelial structure and function will further our understanding of the adverse health effects of air pollution exposure.


Asunto(s)
Contaminantes Atmosféricos/toxicidad , Ozono/toxicidad , Material Particulado/toxicidad , Mucosa Respiratoria/efectos de los fármacos , Pruebas de Toxicidad , Animales
8.
Sci Rep ; 11(1): 13584, 2021 Jun 30.
Artículo en Inglés | MEDLINE | ID: mdl-34193883

RESUMEN

The flux of CO2 between the atmosphere and the ocean is often estimated as the air-sea gas concentration difference multiplied by the gas transfer velocity (K660). The first order driver for K660 over the ocean is wind through its influence on near surface hydrodynamics. However, field observations have shown substantial variability in the wind speed dependencies of K660. In this study we measured K660 with the eddy covariance technique during a ~ 11,000 km long Southern Ocean transect. In parallel, we made a novel measurement of the gas transfer efficiency (GTE) based on partial equilibration of CO2 using a Segmented Flow Coil Equilibrator system. GTE varied by 20% during the transect, was distinct in different water masses, and related to K660. At a moderate wind speed of 7 m s-1, K660 associated with high GTE exceeded K660 with low GTE by 30% in the mean. The sensitivity of K660 towards GTE was stronger at lower wind speeds and weaker at higher wind speeds. Naturally-occurring organics in seawater, some of which are surface active, may be the cause of the variability in GTE and in K660. Neglecting these variations could result in biases in the computed air-sea CO2 fluxes.

9.
Front Immunol ; 11: 580401, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-33381112

RESUMEN

Rationale: Protein kinase D (PKD) is a serine/threonine kinase family that is involved in a wide array of signaling pathways. Although PKD has been implicated in immune responses, relatively little is known about the function of PKD in the lung or during viral infections. Objectives: We investigated the hypothesis that PKD is involved in multiple aspects of host response to viral infection. Methods: The selective PKD inhibitor CRT0010166 was administered to C57BL/6 mice prior to and during challenge with either inhaled double-stranded RNA or Influenza A Virus. PKD signaling pathways were investigated in human bronchial epithelial cells treated with CRT0010166, double-stranded RNA, and/or infected with Influenza A Virus. Measurements: Total protein and albumin accumulation in the bronchoalveolar fluid was used to asses inside/out leak. Clearance of inhaled FITC-dextran out of the airspace was used to assess outside/in leak. Cytokines and neutrophils in bronchoalveolar lavage were assayed with ELISAs and cytospins respectively. Viral RNA level was assessed with RT-PCR and protein level assessed by ELISA. Main Results: PKD inhibition prevented airway barrier dysfunction and pro-inflammatory cytokine release. Epithelial cells express PKD3, and PKD3 siRNA knock-down inhibited polyI:C induced cytokine production. Lung epithelial-specific deletion of PKD3 (CC10-Cre x PKD3-floxed mice) partially attenuated polyI:C-induced barrier disruption in vivo. Mechanistically, we found that PKD promoted cytokine mRNA transcription, not secretion, likely through activating the transcription factor Sp1. Finally, prophylactic CRT treatment of mice promoted barrier integrity during influenza virus infection and reduced viral burden. Conclusions: Inhibiting PKD promotes barrier integrity, limit pathogenic cytokine levels, and restrict Influenza A Virus infection. Therefore, PKD is an attractive target for novel antiviral therapeutics.


Asunto(s)
Virus de la Influenza A/fisiología , Gripe Humana/inmunología , Infecciones por Orthomyxoviridae/inmunología , Proteína Quinasa C/metabolismo , Mucosa Respiratoria/metabolismo , Animales , Células Cultivadas , Dextranos , Modelos Animales de Enfermedad , Humanos , Ratones , Ratones Endogámicos C57BL , Ratones Noqueados , Proteína Quinasa C/genética , Inhibidores de Proteínas Quinasas/administración & dosificación , ARN Interferente Pequeño/genética , Mucosa Respiratoria/patología , Transducción de Señal , Factor de Transcripción Sp1/genética , Factor de Transcripción Sp1/metabolismo
10.
Part Fibre Toxicol ; 17(1): 52, 2020 10 15.
Artículo en Inglés | MEDLINE | ID: mdl-33059747

RESUMEN

BACKGROUND: While exposure to diesel exhaust particles has been linked to aberrant immune responses in allergic diseases such as asthma, little attention has been paid to their effects on the airway epithelial barrier. In this study, we sought to determine the effect of diesel exhaust exposure on airway epithelial barrier function and composition using in vitro and in vivo model systems. METHODS: 16HBE14o- human bronchial epithelial cells were grown on collagen coated Transwell inserts and exposed to 5 to 50 µg/cm2 SRM 2975 diesel particulate matter (DEP) suspended in cell culture medium or vehicle controls. Changes in barrier function were assessed by measuring transepithelial electrical resistance (TEER) and permeability to 4 kDa FITC Dextran. Neonatal BALB/c mice were exposed to aerosolized DEP (255 ± 89 µg/m3; 2 h per day for 5 days) and changes in the tight junction protein Tricellulin were assessed 2 weeks post exposure. RESULTS: A six-hour incubation of epithelial cells with diesel exhaust particles caused a significant concentration-dependent reduction in epithelial barrier integrity as measured by decreased TEER and increased permeability to 4 kDa FITC-Dextran. This reduction in epithelial barrier integrity corresponded to a significant reduction in expression of the tight junction protein Tricellulin. siRNA mediated knockdown of Tricellulin recapitulated changes in barrier function caused by DEP exposure. Neonatal exposure to aerosolized DEP caused a significant reduction in lung Tricellulin 2 weeks post exposure at both the protein and mRNA level. CONCLUSION: Short term exposure to DEP causes a significant reduction in epithelial barrier integrity through a reduction in the tight junction protein Tricellulin. Neonatal exposure to aerosolized DEP caused a significant and sustained reduction in Tricellulin protein and mRNA in the lung, suggesting that early life exposure to inhaled DEP may cause lasting changes in airway epithelial barrier function.


Asunto(s)
Contaminantes Atmosféricos/toxicidad , Proteína 2 con Dominio MARVEL/metabolismo , Emisiones de Vehículos/toxicidad , Animales , Asma , Células Epiteliales , Humanos , Pulmón , Ratones , Ratones Endogámicos BALB C , Proteínas de Uniones Estrechas
11.
PLoS One ; 14(5): e0216056, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31067281

RESUMEN

The airway epithelial barrier is critical for preventing pathogen invasion and translocation of inhaled particles into the lung. Epithelial cells also serve an important sentinel role after infection and release various pro-inflammatory mediators that recruit and activate immune cells. Airway epithelial barrier disruption has been implicated in a growing number of respiratory diseases including viral infections. It is thought that when a pathogen breaks the barrier and gains access to the host tissue, pro-inflammatory mediators increase, which further disrupts the barrier and initiates a vicious cycle of leak. However, it is difficult to study airway barrier integrity in vivo, and little is known about relationship between epithelial barrier function and airway inflammation. Current assays of pulmonary barrier integrity quantify the leak of macromolecules from the vasculature into the airspaces (or "inside/out" leak). However, it is also important to measure the ease with which inhaled particles, allergens, or pathogens can enter the subepithelial tissues (or "outside/in" leak). We challenged mice with inhaled double stranded RNA (dsRNA) and explored the relationship between inside/out and outside/in barrier function and airway inflammation. Using wild-type and gene-targeted mice, we studied the roles of the dsRNA sensors Toll Like Receptor 3 (TLR3) and Melanoma Differentiation-Associated protein 5 (MDA5). Here we report that after acute challenge with inhaled dsRNA, airway barrier dysfunction occurs in a TLR3-dependent manner, whereas leukocyte accumulation is largely MDA5-dependent. We conclude that airway barrier dysfunction and inflammation are regulated by different mechanisms at early time points after exposure to inhaled dsRNA.


Asunto(s)
Inflamación/inducido químicamente , Helicasa Inducida por Interferón IFIH1/fisiología , ARN Bicatenario/farmacología , Mucosa Respiratoria/efectos de los fármacos , Receptor Toll-Like 3/fisiología , Administración por Inhalación , Animales , Líquido del Lavado Bronquioalveolar/química , Quimiocina CCL3/análisis , Femenino , Inflamación/metabolismo , Inflamación/fisiopatología , Interferón gamma/análisis , Interleucina-6/análisis , Masculino , Ratones , Ratones Endogámicos C57BL , Ratones Noqueados , ARN Bicatenario/metabolismo , Mucosa Respiratoria/metabolismo , Mucosa Respiratoria/fisiología
12.
J Asthma ; 56(12): 1257-1265, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-30444143

RESUMEN

Objective: Airway epithelial barrier dysfunction is emerging as an important feature of asthma pathogenesis, but this is difficult to measure in individual subjects. We aimed to develop a noninvasive way to measure airway permeability in asthma. Methods: Healthy controls and subjects with mild asthma inhaled dry powder mannitol in a dose-escalating manner on two separate occasions, stopping at 155 mg or 315 mg. Serum mannitol levels were measured at baseline and then 30, 90, and 150 min after mannitol inhalation. Mannitol absorption was compared with measurements of airflow obstruction (FEV1) and airway inflammation (FeNO). Results: Serum mannitol levels increased in a time- and dose-dependent manner in both healthy control and subjects with asthma. There were no significant differences in mannitol absorption when comparing healthy controls and subjects with asthma. Mannitol absorption did not correlate with markers of airway obstruction or inflammation. Conclusions: Measuring serum concentrations of mannitol after inhalation challenge can potentially provide insights into airway barrier function in asthma.


Asunto(s)
Antiasmáticos/administración & dosificación , Asma/diagnóstico , Epitelio/patología , Volumen Espiratorio Forzado/efectos de los fármacos , Manitol/administración & dosificación , Manitol/sangre , Administración por Inhalación , Manejo de la Vía Aérea , Remodelación de las Vías Aéreas (Respiratorias)/efectos de los fármacos , Análisis de Varianza , Área Bajo la Curva , Asma/tratamiento farmacológico , Pruebas de Provocación Bronquial/métodos , Estudios de Casos y Controles , Relación Dosis-Respuesta a Droga , Esquema de Medicación , Epitelio/efectos de los fármacos , Femenino , Humanos , Pulmón/efectos de los fármacos , Pulmón/fisiopatología , Masculino , Proyectos Piloto , Valores de Referencia , Índice de Severidad de la Enfermedad , Estadísticas no Paramétricas , Factores de Tiempo
13.
Environ Sci Technol ; 49(19): 11612-21, 2015 Oct 06.
Artículo en Inglés | MEDLINE | ID: mdl-26301371

RESUMEN

An autonomous underwater vehicle (Seaglider) has been used to estimate marine primary production (PP) using a combination of irradiance and fluorescence vertical profiles. This method provides estimates for depth-resolved and temporally evolving PP on fine spatial scales in the absence of ship-based calibrations. We describe techniques to correct for known issues associated with long autonomous deployments such as sensor calibration drift and fluorescence quenching. Comparisons were made between the Seaglider, stable isotope ((13)C), and satellite estimates of PP. The Seaglider-based PP estimates were comparable to both satellite estimates and stable isotope measurements.


Asunto(s)
Clorofila/análisis , Clorofila/metabolismo , Monitoreo del Ambiente/métodos , Agua de Mar/análisis , Océano Atlántico , Monitoreo del Ambiente/instrumentación , Fluorescencia
14.
Appl Opt ; 52(10): 2019-37, 2013 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-23545956

RESUMEN

Ocean color measured from satellites provides daily, global estimates of marine inherent optical properties (IOPs). Semi-analytical algorithms (SAAs) provide one mechanism for inverting the color of the water observed by the satellite into IOPs. While numerous SAAs exist, most are similarly constructed and few are appropriately parameterized for all water masses for all seasons. To initiate community-wide discussion of these limitations, NASA organized two workshops that deconstructed SAAs to identify similarities and uniqueness and to progress toward consensus on a unified SAA. This effort resulted in the development of the generalized IOP (GIOP) model software that allows for the construction of different SAAs at runtime by selection from an assortment of model parameterizations. As such, GIOP permits isolation and evaluation of specific modeling assumptions, construction of SAAs, development of regionally tuned SAAs, and execution of ensemble inversion modeling. Working groups associated with the workshops proposed a preliminary default configuration for GIOP (GIOP-DC), with alternative model parameterizations and features defined for subsequent evaluation. In this paper, we: (1) describe the theoretical basis of GIOP; (2) present GIOP-DC and verify its comparable performance to other popular SAAs using both in situ and synthetic data sets; and, (3) quantify the sensitivities of their output to their parameterization. We use the latter to develop a hierarchical sensitivity of SAAs to various model parameterizations, to identify components of SAAs that merit focus in future research, and to provide material for discussion on algorithm uncertainties and future emsemble applications.

16.
Appl Opt ; 48(31): 6059-73, 2009 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-19881674

RESUMEN

We used in situ radiance/irradiance profiles to retrieve profiles of the spectral backscattering coefficient for all particles in an E. huxleyi coccolithophore bloom off the coast of Plymouth, UK. At high detached coccolith concentrations the spectra of backscattering all showed a minimum near approximately 550 to 600 nm. Using flow cytometry estimates of the detached coccolith concentration, and assuming all of the backscattering (over and above the backscattering by the water itself) was due to detached coccoliths, we determined the upper limit of the backscattering cross section (sigma(b)) of individual coccoliths to be 0.123+/-0.039 microm(2)/coccolith at 500 nm. Physical models of detached coccoliths were then developed and the discrete dipole approximation was used to compute their average backscattering cross section in random orientation. The result was 0.092 microm(2) at 500 nm, with the computed sigma(b) displaying a spectral shape similar to the measurements, but with less apparent increase in backscattering toward the red. When sigma(b) is computed on a per mole of calcite, rather than a per coccolith basis, it agreed reasonably well with that determined for acid-labile backscattering at 632 nm averaged over several species of cultured calcifying algae. Intact coccolithophore cells were taken into account by arguing that coccoliths attached to coccolithophore cells (forming a "coccosphere") backscatter in a manner similar to free coccoliths in random orientation. Estimating the number of coccoliths per coccosphere and using the observed number of coccolithophore cells resulted is an apparent backscattering cross section at 500 nm of 0.114+/-0.013 microm(2)/coccolith, in satisfactory agreement with the measured backscattering.


Asunto(s)
Carbonato de Calcio/análisis , Carbonato de Calcio/química , Monitoreo del Ambiente/métodos , Sedimentos Geológicos/análisis , Nefelometría y Turbidimetría/métodos , Phaeophyceae/aislamiento & purificación , Phaeophyceae/metabolismo , Algoritmos , Simulación por Computador , Fósiles , Luz , Modelos Biológicos , Océanos y Mares , Phaeophyceae/química , Dispersión de Radiación
17.
Org Biomol Chem ; 5(1): 160-8, 2007 Jan 07.
Artículo en Inglés | MEDLINE | ID: mdl-17164921

RESUMEN

The penam nucleus can be modified to behave as a beta-lactamase-dependent 'prodrug' by incorporation of a vinyl ester side chain at the 6-position. Enzyme-catalysed hydrolysis of the beta-lactam ring uncovers the thiazolidine-ring nitrogen as a nucleophile that drives a rapid intramolecular displacement on the side chain. Attachment of 7-hydroxy-4-methylcoumarin as the releasable group of this side chain generated a penicillin structure that can function as a fluorescence-based reporter substance/diagnostic for the presence of low levels of beta-lactamase enzyme in solution. Mechanistic details of the reaction pattern are documented and the scope and limitations of exploiting the structural modification are discussed.


Asunto(s)
Penicilinas/química , Profármacos/química , beta-Lactamasas/química , Antibacterianos/química , Estructura Molecular
18.
Appl Opt ; 45(31): 8116-31, 2006 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-17068554

RESUMEN

A semianalytical approach to the problem of determining inherent optical properties from satellite and in situ ocean color data is presented. The model uses empirically derived spectral slopes between neighboring wavebands in combination with radiative transfer modeling to determine the spectral absorption (alpha) and backscatter (b(b)); these values are then further decomposed into absorption due to phytoplankton, detrital, and colored dissolved organic matter components. When compared with over 400 in situ data points the model makes good retrievals of the total absorption and backscatter across the entire spectrum, with regression slopes close to unity, little or no bias, high percentage of variance explained, and low rms errors.


Asunto(s)
Color , Colorimetría/métodos , Modelos Químicos , Modelos Moleculares , Agua de Mar/química , Análisis Espectral/métodos , Simulación por Computador , Océanos y Mares , Reproducibilidad de los Resultados , Sensibilidad y Especificidad
19.
J Org Chem ; 69(23): 7965-70, 2004 Nov 12.
Artículo en Inglés | MEDLINE | ID: mdl-15527277

RESUMEN

In previous work we have shown that a cephalosporin structure bearing an S-aminosulfenimine at the 7-position behaved as a beta-lactamase-dependent dual-release prodrug. Scission of the beta-lactam ring of such a structure led to the rapid loss of the sulfur-attached side chain moiety via an intramolecular displacement, while the 3'-group was lost via the well-established elimination process at that position. In the present work we report on an evaluation of the scope and limitations of exploiting the S-aminosulfenimine functionality to generate a cephalosporin-based prodrug incorporating two biologically active components. Starting from 7-ACA, a viable synthetic cycle was put in place that avoided formation of the Delta(2) isomer throughout and that allowed incorporation of aminoglutethimide at the 3'-position and of a tosyl S-aminosulfenimine at the 7-position. The direct incorporation of a biologically active sulfonamide (ethoxzolamide) or a sulfamate (coumate) at this latter position was not achieved as a result of the difficulty of generating the corresponding sulfur diimides. An indirect route for the formation of an S-aminosulfenimine was put in place, as was a general method of alkylation (Mitsunobu reaction) of the tosyl S-aminosulfenimine following its incorporation.


Asunto(s)
Cefalosporinas/síntesis química , Técnicas Químicas Combinatorias , Profármacos/síntesis química , Alquilación , Estructura Molecular , Estereoisomerismo
20.
Chem Commun (Camb) ; (20): 2332-3, 2004 Oct 21.
Artículo en Inglés | MEDLINE | ID: mdl-15490006

RESUMEN

Incorporation of a vinyl ester exocyclic to the beta-lactam ring of a penicillin nucleus enables this to act as a beta-lactamase-dependent prodrug - rapid release of the (unactivated) alkoxy component of the vinyl ester is triggered by enzyme-catalysed hydrolysis of the beta-lactam ring, whilst buffer-catalysed hydrolysis of the structure at neutral pH is particularly slow.


Asunto(s)
Lactamas/química , Penicilinas/química , Profármacos/química , beta-Lactamasas/química , Concentración de Iones de Hidrógeno , Espectroscopía de Resonancia Magnética , Compuestos de Vinilo/química
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA
...